mRNA_P-wetherbeei_contig10681.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10681.1.1
Unique NamemRNA_P-wetherbeei_contig10681.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A7D9JQ57_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JQ57_PARCT)

HSP 1 Score: 88.2 bits (217), Expect = 9.510e-20
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCLCRRH 234
            MDVKTAYL AP+D  +++  PEG+ER   NG R V KL  SLYGLKQS  NWN  +  +   +SFT S ADPC+  R+
Sbjct:   76 MDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNWNNMLHDYVMKESFTQSLADPCVYIRN 153
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A6S7HC66_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HC66_PARCT)

HSP 1 Score: 89.0 bits (219), Expect = 1.340e-19
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCL 222
            MDVKTAYL AP+D  +YM  PEG+E    NG + V KLK SLYGLKQS  NWN  +  + + + FT S ADPC+
Sbjct:   39 MDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLKKSLYGLKQSGRNWNNLLHEYLQKEGFTQSQADPCV 112
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A6S7HBU5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HBU5_PARCT)

HSP 1 Score: 88.6 bits (218), Expect = 9.740e-19
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCLCRRH 234
            MDVKTAYL AP+D  +++  PEG+ER   NG R V KL  SLYGLKQS  NWN  +  +   +SFT S ADPC+  R+
Sbjct:  762 MDVKTAYLNAPIDCEIFIEQPEGYERVGQNGERLVCKLNKSLYGLKQSGRNWNNMLHDYLMKESFTQSLADPCVYIRN 839
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A6S7HTI9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HTI9_PARCT)

HSP 1 Score: 87.0 bits (214), Expect = 3.360e-18
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCL 222
            MDVKTAYL AP+D  +YM  PEG+E    NG + V KL  SLYGLKQS  NWN  +  + + + FT S ADPC+
Sbjct:  893 MDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFTQSQADPCV 966
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A6S7K9T5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K9T5_PARCT)

HSP 1 Score: 84.7 bits (208), Expect = 4.490e-18
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCL 222
            MDVKTAYL AP+D  +YM  PEG+E    NG + V KL  SLYGLKQS  NWN  +    + + FT S ADPC+
Sbjct:   21 MDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHENLQKEGFTQSQADPCV 94
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A2G8LC06_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LC06_STIJA)

HSP 1 Score: 84.7 bits (208), Expect = 2.100e-17
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCLCRRHD 237
            MDVKTAYL AP+D  +Y+  PEG+     NG + V +LK SLYGLKQS  NWN  + ++F  +S++ S  DPC+  +H+
Sbjct:    1 MDVKTAYLNAPIDCELYVEQPEGFAVSGKNGEKLVCRLKKSLYGLKQSGRNWNSLLHSYFVGESYSQSLVDPCVYTKHE 79
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A7D9K6W0_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9K6W0_PARCT)

HSP 1 Score: 84.7 bits (208), Expect = 2.140e-17
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCL 222
            MDVKTAYL AP+D  +YM  PEG+E    NG + V KL  SLYGLKQS  NWN  +  + + + F  S ADPC+
Sbjct:  284 MDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFIQSQADPCV 357
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BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A2G8JVM6_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JVM6_STIJA)

HSP 1 Score: 84.7 bits (208), Expect = 2.170e-17
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCLCRRHD 237
            MDVKTAYL AP+D  +Y+  PEG+     NG + V +LK SLYGLKQS  NWN  + ++F  +S++ S  DPC+  +H+
Sbjct:  739 MDVKTAYLNAPIDCELYVEQPEGFAVSGKNGEKLVCRLKKSLYGLKQSGRNWNSLLHSYFVGESYSQSLVDPCVYTKHE 817
[Close]
BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A6S7JFG0_PARCT (Spondin domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JFG0_PARCT)

HSP 1 Score: 84.0 bits (206), Expect = 4.000e-17
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCL 222
            MDVKTAYL AP+D  +YM  PEG+E    NG + V KL  SLYGLKQS  NWN  +  + + + FT S AD C+
Sbjct:   91 MDVKTAYLNAPIDCELYMEQPEGFEEHGENGEKLVCKLNKSLYGLKQSGRNWNNLLHEYLQKEGFTQSQADACV 164
[Close]
BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Match: A0A5D3ALJ4_9TREE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Cryptococcus floricola TaxID=2591691 RepID=A0A5D3ALJ4_9TREE)

HSP 1 Score: 83.6 bits (205), Expect = 5.570e-17
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDNNWNRHVDAWFKSQSFTPSGADPCL-CRRHD 237
            +D+K A+L   L+ET+YM PPEG   P  N    V++L+ SLYGLKQS   +N+  D W +SQ FTPS AD CL  RRH+
Sbjct: 1091 VDIKAAFLNGDLEETIYMDPPEGSNIPTGN----VLRLRKSLYGLKQSPRCFNQAFDKWLRSQGFTPSRADSCLYSRRHN 1166
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10681.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9JQ57_PARCT9.510e-2053.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HC66_PARCT1.340e-1955.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HBU5_PARCT9.740e-1953.85Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HTI9_PARCT3.360e-1854.05Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7K9T5_PARCT4.490e-1854.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G8LC06_STIJA2.100e-1748.10Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A7D9K6W0_PARCT2.140e-1752.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G8JVM6_STIJA2.170e-1748.10Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A6S7JFG0_PARCT4.000e-1752.70Spondin domain-containing protein n=1 Tax=Paramuri... [more]
A0A5D3ALJ4_9TREE5.570e-1751.25Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10681contigP-wetherbeei_contig10681:132..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5217.XP_007000714.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size237
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.89e-16
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,3VGMM@5234|Tremellales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size237
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185880.597713-CDS-P-wetherbeei_contig10681:131..3681683185880.597713-CDS-P-wetherbeei_contig10681:131..368Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10681 132..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10681.1.1prot_P-wetherbeei_contig10681.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10681 132..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10681.1.1

>prot_P-wetherbeei_contig10681.1.1 ID=prot_P-wetherbeei_contig10681.1.1|Name=mRNA_P-wetherbeei_contig10681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MDVKTAYLKAPLDETVYMAPPEGWERPANNGIRHVIKLKNSLYGLKQSDN
NWNRHVDAWFKSQSFTPSGADPCLCRRHD
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mRNA from alignment at P-wetherbeei_contig10681:132..368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10681.1.1 ID=mRNA_P-wetherbeei_contig10681.1.1|Name=mRNA_P-wetherbeei_contig10681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig10681:132..368- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGTCAAAACTGCTTACCTAAAAGCTCCTTTGGACGAAACTGTCTA
TATGGCGCCTCCTGAAGGCTGGGAACGCCCCGCCAACAACGGCATCCGCC
ACGTCATAAAACTGAAGAACAGCCTCTACGGCCTCAAGCAGAGCGACAAC
AACTGGAACAGGCACGTTGATGCCTGGTTCAAATCACAAAGCTTCACACC
TAGTGGTGCTGACCCGTGCCTGTGCCGGCGGCACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10681:132..368-

>mRNA_P-wetherbeei_contig10681.1.1 ID=mRNA_P-wetherbeei_contig10681.1.1|Name=mRNA_P-wetherbeei_contig10681.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig10681:132..368- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATGTCAAAACTGCTTACCTAAAAGCTCCTTTGGACGAAACTGTCTA
TATGGCGCCTCCTGAAGGCTGGGAACGCCCCGCCAACAACGGCATCCGCC
ACGTCATAAAACTGAAGAACAGCCTCTACGGCCTCAAGCAGAGCGACAAC
AACTGGAACAGGCACGTTGATGCCTGGTTCAAATCACAAAGCTTCACACC
TAGTGGTGCTGACCCGTGCCTGTGCCGGCGGCACGAC
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