mRNA_P-wetherbeei_contig10628.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig10628.1.1
Unique Name	mRNA_P-wetherbeei_contig10628.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: D7FVY5_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVY5_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.330e-26
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQPNPLLVVNGRINV 213
            V +WNHLDNF+KR+NK LLDK+AVEREQ RLE EN DL++I+KQ +DG+SV +DV+S PNPLLVVNGR+N+
Sbjct:  565 VPRWNHLDNFHKRYNKALLDKLAVEREQNRLEAENRDLQSIVKQYLDGISVPEDVVSAPNPLLVVNGRVNM 635

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A7S0WSJ2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WSJ2_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 8.850e-24
Identity = 44/72 (61.11%), Postives = 63/72 (87.50%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQP-NPLLVVNGRINV 213
            V +W++L+ F++RFNK +LDK A+++E+ARLE+ENADLR+I+KQ +DG+SVNDDV++ P NPLLVVN R+ V
Sbjct:  103 VEEWDYLNRFFRRFNKAVLDKAAIDKEKARLEKENADLRSILKQYLDGISVNDDVMNNPINPLLVVNNRLQV 174

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A0M0J8N3_9EUKA (Flagellar associated protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8N3_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 1.410e-23
Identity = 46/71 (64.79%), Postives = 61/71 (85.92%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQPNPLLVVNGRINV 213
            V +WN LDNF+KR+NKVLLD +A+ERE+ARL  EN DLR+I+KQ +DG+SVN+DV++ PNPLLVVN + N+
Sbjct:  411 VEEWNCLDNFFKRYNKVLLDVLAIERERARLRSENGDLRSILKQYLDGISVNEDVINNPNPLLVVNHKTNI 481

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A8J4ETC5_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4ETC5_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 4.280e-23
Identity = 46/72 (63.89%), Postives = 63/72 (87.50%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQP-NPLLVVNGRINV 213
            V +W++L+ F+KR+NK LLDK A+++E+ARLERENADLR+I+KQ +DG+SVNDDVL+ P NPLLVVN R+ +
Sbjct:  486 VDEWDYLNRFFKRYNKALLDKTAIDKEKARLERENADLRSILKQYLDGISVNDDVLNNPVNPLLVVNNRLQI 557

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A7S0YHR8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YHR8_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 4.910e-23
Identity = 44/72 (61.11%), Postives = 61/72 (84.72%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQP-NPLLVVNGRINV 213
            + +W++L+N +KR+NK LLD VA+ +E+ RLERENADLR+I+KQ +DG+SVNDDVL+ P NPLLVVN R+ +
Sbjct:   64 IEEWDYLNNTFKRYNKALLDNVAISKERTRLERENADLRSILKQYLDGISVNDDVLNNPINPLLVVNNRLQI 135

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A150GPR3_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GPR3_GONPE)

HSP 1 Score: 100 bits (248), Expect = 5.810e-23
Identity = 46/72 (63.89%), Postives = 63/72 (87.50%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQP-NPLLVVNGRINV 213
            V +W++L+ F+KR+NK LLDK A+++E+ARLERENADLR+I+KQ +DG+SVNDDVL+ P NPLLVVN R+ +
Sbjct:  497 VQEWDYLNRFFKRYNKALLDKAAIDKEKARLERENADLRSILKQYLDGISVNDDVLNNPVNPLLVVNNRLQI 568

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: D8U524_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U524_VOLCA)

HSP 1 Score: 100 bits (248), Expect = 6.010e-23
Identity = 46/72 (63.89%), Postives = 63/72 (87.50%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQP-NPLLVVNGRINV 213
            V +W++L+ F+KR+NK LLDK A+++E+ARLERENADLR+I+KQ +DG+SVNDDVL+ P NPLLVVN R+ +
Sbjct:  516 VEEWDYLNRFFKRYNKALLDKAAIDKEKARLERENADLRSILKQYLDGISVNDDVLNNPVNPLLVVNNRLQI 587

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A7S4PVM2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PVM2_9DINO)

HSP 1 Score: 99.4 bits (246), Expect = 9.720e-23
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQPNPLLVVNGRINV 213
            + +W  LDNF+KRFNKV LD VA+ERE  RL +EN  LR+I+KQ +DGVSVN++VL+ PNPLLVVNG++N+
Sbjct:  436 IDEWTFLDNFFKRFNKVKLDSVAIERELERLGKENGQLRSILKQFLDGVSVNEEVLANPNPLLVVNGKVNL 506

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A835XVY2_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVY2_9CHLO)

HSP 1 Score: 99.0 bits (245), Expect = 1.460e-22
Identity = 46/72 (63.89%), Postives = 63/72 (87.50%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQP-NPLLVVNGRINV 213
            V +W++L+ F+KRFNK LLDK A+++E++RLERENADLR+I+KQ +DG+SVNDDVL+ P NPLLVVN R+ +
Sbjct:  480 VDEWDYLNRFFKRFNKSLLDKAAIDKERSRLERENADLRSILKQYLDGISVNDDVLNNPVNPLLVVNQRLQI 551

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BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Match: A0A7S4MHI3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MHI3_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 2.250e-22
Identity = 42/71 (59.15%), Postives = 62/71 (87.32%), Query Frame = 1

Query:    1 VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVSVNDDVLSQPNPLLVVNGRINV 213
            V +W++L+NF+KR+NKVLLD +A++RE+ RL  EN+DLR+I+KQ +DG+SVN+DV++ PNPLLVVN + N+
Sbjct:  286 VEEWDYLNNFFKRYNKVLLDVMAIDREKERLSHENSDLRSILKQYLDGISVNEDVINNPNPLLVVNHKTNI 356

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig10628.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FVY5_ECTSI	3.330e-26	70.42	Flagellar associated protein n=1 Tax=Ectocarpus si...	[more]
A0A7S0WSJ2_9CHLO	8.850e-24	61.11	Hypothetical protein (Fragment) n=1 Tax=Chlamydomo...	[more]
A0A0M0J8N3_9EUKA	1.410e-23	64.79	Flagellar associated protein n=1 Tax=Chrysochromul...	[more]
A0A8J4ETC5_9CHLO	4.280e-23	63.89	Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ...	[more]
A0A7S0YHR8_9CHLO	4.910e-23	61.11	Hypothetical protein (Fragment) n=1 Tax=Polytomell...	[more]
A0A150GPR3_GONPE	5.810e-23	63.89	Uncharacterized protein n=1 Tax=Gonium pectorale T...	[more]
D8U524_VOLCA	6.010e-23	63.89	Uncharacterized protein (Fragment) n=1 Tax=Volvox ...	[more]
A0A7S4PVM2_9DINO	9.720e-23	63.38	Hypothetical protein n=1 Tax=Alexandrium monilatum...	[more]
A0A835XVY2_9CHLO	1.460e-22	63.89	Uncharacterized protein n=1 Tax=Edaphochlamys deba...	[more]
A0A7S4MHI3_9EUKA	2.250e-22	59.15	Hypothetical protein n=1 Tax=Prymnesium polylepis ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig10628	contig	P-wetherbeei_contig10628:347..816 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7FVY5
Preferred name	CCDC65
PFAMs	NYD-SP28,NYD-SP28_assoc
Model size	213
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
GOs	GO:0000226,GO:0001578,GO:0003352,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0032879,GO:0032886,GO:0034622,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0051270,GO:0060271,GO:0060632,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons	2
Evalue	5.45e-27
EggNOG OGs	2CMHW@1\|root,2QQDD@2759\|Eukaryota
Description	regulation of cilium movement
Cds size	213
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683185878.0486953-CDS-P-wetherbeei_contig10628:346..394	1683185878.0486953-CDS-P-wetherbeei_contig10628:346..394	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig10628 347..394 +
1683185878.0645707-CDS-P-wetherbeei_contig10628:651..816	1683185878.0645707-CDS-P-wetherbeei_contig10628:651..816	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig10628 652..816 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig10628.1.1	prot_P-wetherbeei_contig10628.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig10628 347..816 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig10628:347..816+
coding sequence from alignment at P-wetherbeei_contig10628:347..816+

protein sequence of mRNA_P-wetherbeei_contig10628.1.1

>prot_P-wetherbeei_contig10628.1.1 ID=prot_P-wetherbeei_contig10628.1.1|Name=mRNA_P-wetherbeei_contig10628.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
VGKWNHLDNFYKRFNKVLLDKVAVEREQARLERENADLRAIIKQCVDGVS
VNDDVLSQPNPLLVVNGRINV

mRNA from alignment at P-wetherbeei_contig10628:347..816+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig10628.1.1 ID=mRNA_P-wetherbeei_contig10628.1.1|Name=mRNA_P-wetherbeei_contig10628.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=470bp|location=Sequence derived from alignment at P-wetherbeei_contig10628:347..816+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCAAATGGAACCACCTCGACAACTTCTACAAGCGCTTCAACAAGGT
GCGACCGCTCTCGCTTGCTTTCAGTTCCGACATGCCGGATTCATGTTCCG
CCGCCGCGGCTGTCGGCGGTGCCCATCGAACTTTTCTCGTCATTACCGAC
GCCATCACTGCACGGTGCCATCGTTGCATCTTGTCGCCGTCACGGGCCGC
CGCGGTCATGCACTGCTGGGAGTAATATGGGGTCGATATATTCTGTCCGC
TCCCTTTATTTTCTCCCGTCTCTCCCTGTCCTTCTTTTCCTTCCCCTGCG
GGCAGGTACTGCTGGACAAGGTGGCGGTGGAGCGCGAGCAGGCGCGGCTC
GAGCGCGAGAACGCCGACCTGCGCGCCATCATTAAGCAATGCGTCGACGG
CGTCTCCGTCAACGACGACGTCCTCTCCCAACCCAACCCGCTGCTTGTTG
TCAACGGACGCATCAACGTC

Coding sequence (CDS) from alignment at P-wetherbeei_contig10628:347..816+

>mRNA_P-wetherbeei_contig10628.1.1 ID=mRNA_P-wetherbeei_contig10628.1.1|Name=mRNA_P-wetherbeei_contig10628.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig10628:347..816+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCAAATGGAACCACCTCGACAACTTCTACAAGCGCTTCAACAAGGT
ACTGCTGGACAAGGTGGCGGTGGAGCGCGAGCAGGCGCGGCTCGAGCGCG
AGAACGCCGACCTGCGCGCCATCATTAAGCAATGCGTCGACGGCGTCTCC
GTCAACGACGACGTCCTCTCCCAACCCAACCCGCTGCTTGTTGTCAACGG
ACGCATCAACGTC