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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 0 |
Start | 0 |
Seed ortholog | 7230.FBpp0169320 |
Preferred name | CDT1 |
PFAMs | CDT1,CDT1_C |
Model size | 1473 |
Max annot lvl | 33208|Metazoa |
KEGG ko | ko:K10727 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000082,GO:0000083,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000819,GO:0000910,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006355,GO:0006725,GO:0006807,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007098,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007399,GO:0008150,GO:0008152,GO:0008608,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009653,GO:0009743,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010927,GO:0010948,GO:0010965,GO:0016043,GO:0016049,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019730,GO:0019953,GO:0021782,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030174,GO:0030703,GO:0030707,GO:0030855,GO:0031023,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031570,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033260,GO:0033262,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035561,GO:0035563,GO:0040007,GO:0042023,GO:0042063,GO:0042065,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045740,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048588,GO:0048589,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051276,GO:0051298,GO:0051301,GO:0051303,GO:0051310,GO:0051315,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060341,GO:0060429,GO:0061640,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071163,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0072708,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901700,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902595,GO:1903047,GO:1903504,GO:1903506,GO:1903827,GO:1903828,GO:1903829,GO:1905340,GO:1905341,GO:1905342,GO:1905818,GO:1905820,GO:2000105,GO:2000112,GO:2001141,GO:2001176,GO:2001178,GO:2001252 |
Exons | 3 |
Evalue | 0.000673 |
EggNOG OGs | KOG4762@1|root,KOG4762@2759|Eukaryota,38HTF@33154|Opisthokonta,3BDTD@33208|Metazoa,3CTBB@33213|Bilateria,41V7F@6656|Arthropoda,3SHDM@50557|Insecta,451U1@7147|Diptera,45NKY@7214|Drosophilidae |
Ec32 ortholog description | CDT1 Geminin-binding domain-like |
Ec32 ortholog | Ec-21_005830.1 |
Description | DNA replication factor CDT1 like |
Cds size | 1470 |
COG category | L |
BRITE | ko00000,ko03032,ko03036 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1683185875.1604471-CDS-P-wetherbeei_contig10560:271..866 | 1683185875.1604471-CDS-P-wetherbeei_contig10560:271..866 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig10560 272..866 - |
1683185875.1734505-CDS-P-wetherbeei_contig10560:1091..1494 | 1683185875.1734505-CDS-P-wetherbeei_contig10560:1091..1494 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig10560 1092..1494 - |
1683185875.184811-CDS-P-wetherbeei_contig10560:1845..2317 | 1683185875.184811-CDS-P-wetherbeei_contig10560:1845..2317 | Phaeothamnion wetherbeei SAG_119_79 | CDS | P-wetherbeei_contig10560 1846..2317 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10560.2.2 >prot_P-wetherbeei_contig10560.2.2 ID=prot_P-wetherbeei_contig10560.2.2|Name=mRNA_P-wetherbeei_contig10560.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=490bp
GAALPSSSRVGHTGVESPMSAVGTVGGTPASARAVSTSKGQGPNLLSAEE RLPEIEGDGDDAARYLLAMVAGDAQTEPPPLAAAAAAVREKLVVSKPADT SSAGMLQAVFNSLESVMGLFKARREPPTLSKLKAPVERVSGKAFSRAHVD QILNIYPGAYRLQRIPGRVDGRGRRVTPDDWLVEVPPPEEDEPDKADDGR GDGGGNSGAVGAVKGAGDRVDGGASIKSGVAGGGGGGGSGSSGGSSGSLG GGSTCSGASGAARSTSAAQPTLESVVRRRERLGKLLARRVDRLCTCGPST RPSCQCPVETAVAAVTPASPSPGPAEAVLASSSPYGNGSAALPSAVGTRQ SGSQNGGNGVANGGSSADGGTGAVNGATNDIVANESGGGSSTDNGDAVAC GGGGGDGSGGSSGGGNAEAEDTYEAMMNRLRQREAEQQRRLQRPPEAVRT EQLRRFELPRLADAVRSFFVSLQRSATYFDVIVDDLVRTS back to topmRNA from alignment at P-wetherbeei_contig10560:270..2317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-wetherbeei_contig10560.2.2 ID=mRNA_P-wetherbeei_contig10560.2.2|Name=mRNA_P-wetherbeei_contig10560.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2048bp|location=Sequence derived from alignment at P-wetherbeei_contig10560:270..2317- (Phaeothamnion wetherbeei SAG_119_79) GGCGCTGCGTTGCCAAGCTCGTCGCGGGTCGGGCATACGGGCGTGGAGTC
GCCCATGTCTGCCGTCGGAACCGTAGGCGGAACGCCAGCGTCCGCTCGTG
CCGTATCGACGAGCAAAGGACAGGGCCCAAACCTCCTCTCGGCGGAAGAG
CGCTTGCCTGAAATCGAAGGAGATGGCGACGACGCTGCGCGGTACCTGCT
CGCCATGGTGGCCGGCGACGCTCAGACGGAACCGCCGCCACTGGCAGCGG
CAGCGGCCGCAGTCCGGGAAAAGTTGGTCGTGAGCAAGCCCGCCGACACC
TCGTCGGCCGGCATGCTGCAGGCAGTCTTCAACTCATTGGAATCGGTGAT
GGGCCTCTTCAAGGCGCGACGGGAGCCCCCCACGCTCTCCAAGCTTAAGG
CCCCCGTCGAGCGCGTCTCCGGTAAAGCGTTCTCACGAGCGCACGTCGAC
CAAATCCTCAACATCTATCCTGGTGCGTCCATTTCAAAAACTCCGCCGTT
TCTGTCAGAGCAACTTAATGGGCTTTCTTGCTTCAAGTATTTTCGCATCC
GCTCGATATTCGGAACAGCGCCGCATACCCCTCATCGTGGGGTTTGGCAG
CGTAAATATCAAAAAGTGAAAAAAAAAGAAAGTGGCTGGTGACAAAAAAG
ATAGGTGATGCGCGGGGCCGCAGAGCTATGCATGTACTCTTTCTTTTCGG
CGCGCGCTGCCGTTAGGCGTTGGTTTCTTTCTTCCGAAGTCTTGTTTCGC
GGGTTCTCTTTGCATGTTCCCCGCTTTCTTTTCCATGCTCCGGGATGTCG
CCCATACGGTCCTCCAACCGCAGGGGCCTACCGCCTGCAGCGCATTCCCG
GAAGGGTCGACGGCCGCGGCCGCCGCGTGACGCCCGACGATTGGCTGGTC
GAAGTGCCGCCGCCCGAAGAGGATGAGCCTGACAAGGCCGACGATGGACG
TGGCGACGGTGGCGGCAATTCTGGGGCCGTCGGGGCCGTCAAGGGTGCTG
GCGACCGCGTCGATGGCGGCGCCAGTATTAAGAGCGGGGTTGCTGGCGGT
GGTGGTGGCGGCGGCAGCGGCTCCAGCGGCGGCAGCAGTGGCAGCCTTGG
CGGCGGCAGCACTTGCAGCGGTGCAAGCGGCGCTGCCAGAAGCACGTCTG
CGGCGCAGCCGACGCTTGAGAGCGTGGTACGACGCCGCGAACGGCTCGGA
AAGCTGCTAGCAAGGCGCGTAGACAGGTGCAACTTTTGTTCTTTGACTGT
GGACGGAATTGATTGTCGAGTTGTGACCAGGAGAACATCCTTGTTTGAGC
GGTTACGCCAGTGTGTTACGCCAAACACCTTATGCCGCAACTTGCTTCTG
ACCGCATACTTATCGGGCCGCTGATCAAAGCGGCTTGTGAAGTTTGGTTG
CGACATCAAATCCGGCCCGTAACTTTCTCTTGCTTCCCCAACGCGGACCA
GGCTGTGCACCTGCGGCCCCTCGACGCGTCCATCATGCCAGTGTCCAGTT
GAGACCGCAGTGGCGGCCGTGACGCCGGCGTCGCCGTCCCCTGGACCCGC
TGAAGCCGTGCTAGCATCGTCATCTCCGTATGGGAACGGGTCTGCCGCAT
TGCCATCGGCTGTGGGCACTCGCCAGAGCGGAAGCCAGAACGGTGGCAAC
GGGGTGGCTAATGGCGGGAGCAGCGCCGATGGTGGCACCGGTGCTGTCAA
CGGCGCCACGAACGACATTGTCGCAAACGAGAGCGGTGGCGGCAGCAGCA
CTGACAACGGCGACGCCGTGGCTTGTGGCGGCGGCGGCGGCGACGGCAGC
GGCGGCAGCAGCGGCGGCGGGAACGCTGAAGCGGAGGACACCTACGAAGC
CATGATGAACCGCCTGCGGCAGCGCGAGGCGGAGCAGCAGCGGCGATTGC
AGCGGCCACCCGAGGCGGTGCGGACGGAACAGCTGCGGCGCTTTGAGCTG
CCACGGCTGGCGGACGCCGTGCGGTCGTTCTTTGTGTCTCTGCAACGCTC
GGCCACCTACTTCGACGTCATCGTCGACGACCTCGTCCGCACCAGCCG back to topCoding sequence (CDS) from alignment at P-wetherbeei_contig10560:270..2317- >mRNA_P-wetherbeei_contig10560.2.2 ID=mRNA_P-wetherbeei_contig10560.2.2|Name=mRNA_P-wetherbeei_contig10560.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1470bp|location=Sequence derived from alignment at P-wetherbeei_contig10560:270..2317- (Phaeothamnion wetherbeei SAG_119_79) GGCGCTGCGTTGCCAAGCTCGTCGCGGGTCGGGCATACGGGCGTGGAGTC GCCCATGTCTGCCGTCGGAACCGTAGGCGGAACGCCAGCGTCCGCTCGTG CCGTATCGACGAGCAAAGGACAGGGCCCAAACCTCCTCTCGGCGGAAGAG CGCTTGCCTGAAATCGAAGGAGATGGCGACGACGCTGCGCGGTACCTGCT CGCCATGGTGGCCGGCGACGCTCAGACGGAACCGCCGCCACTGGCAGCGG CAGCGGCCGCAGTCCGGGAAAAGTTGGTCGTGAGCAAGCCCGCCGACACC TCGTCGGCCGGCATGCTGCAGGCAGTCTTCAACTCATTGGAATCGGTGAT GGGCCTCTTCAAGGCGCGACGGGAGCCCCCCACGCTCTCCAAGCTTAAGG CCCCCGTCGAGCGCGTCTCCGGTAAAGCGTTCTCACGAGCGCACGTCGAC CAAATCCTCAACATCTATCCTGGGGCCTACCGCCTGCAGCGCATTCCCGG AAGGGTCGACGGCCGCGGCCGCCGCGTGACGCCCGACGATTGGCTGGTCG AAGTGCCGCCGCCCGAAGAGGATGAGCCTGACAAGGCCGACGATGGACGT GGCGACGGTGGCGGCAATTCTGGGGCCGTCGGGGCCGTCAAGGGTGCTGG CGACCGCGTCGATGGCGGCGCCAGTATTAAGAGCGGGGTTGCTGGCGGTG GTGGTGGCGGCGGCAGCGGCTCCAGCGGCGGCAGCAGTGGCAGCCTTGGC GGCGGCAGCACTTGCAGCGGTGCAAGCGGCGCTGCCAGAAGCACGTCTGC GGCGCAGCCGACGCTTGAGAGCGTGGTACGACGCCGCGAACGGCTCGGAA AGCTGCTAGCAAGGCGCGTAGACAGGCTGTGCACCTGCGGCCCCTCGACG CGTCCATCATGCCAGTGTCCAGTTGAGACCGCAGTGGCGGCCGTGACGCC GGCGTCGCCGTCCCCTGGACCCGCTGAAGCCGTGCTAGCATCGTCATCTC CGTATGGGAACGGGTCTGCCGCATTGCCATCGGCTGTGGGCACTCGCCAG AGCGGAAGCCAGAACGGTGGCAACGGGGTGGCTAATGGCGGGAGCAGCGC CGATGGTGGCACCGGTGCTGTCAACGGCGCCACGAACGACATTGTCGCAA ACGAGAGCGGTGGCGGCAGCAGCACTGACAACGGCGACGCCGTGGCTTGT GGCGGCGGCGGCGGCGACGGCAGCGGCGGCAGCAGCGGCGGCGGGAACGC TGAAGCGGAGGACACCTACGAAGCCATGATGAACCGCCTGCGGCAGCGCG AGGCGGAGCAGCAGCGGCGATTGCAGCGGCCACCCGAGGCGGTGCGGACG GAACAGCTGCGGCGCTTTGAGCTGCCACGGCTGGCGGACGCCGTGCGGTC GTTCTTTGTGTCTCTGCAACGCTCGGCCACCTACTTCGACGTCATCGTCG ACGACCTCGTCCGCACCAGC back to top
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