mRNA_P-wetherbeei_contig10560.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10560.2.2
Unique NamemRNA_P-wetherbeei_contig10560.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10560.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10560contigP-wetherbeei_contig10560:270..2317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7230.FBpp0169320
Preferred nameCDT1
PFAMsCDT1,CDT1_C
Model size1473
Max annot lvl33208|Metazoa
KEGG koko:K10727
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000082,GO:0000083,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000819,GO:0000910,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006355,GO:0006725,GO:0006807,GO:0006955,GO:0006959,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007098,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007399,GO:0008150,GO:0008152,GO:0008608,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009653,GO:0009743,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010927,GO:0010948,GO:0010965,GO:0016043,GO:0016049,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019730,GO:0019953,GO:0021782,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030174,GO:0030703,GO:0030707,GO:0030855,GO:0031023,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031570,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033260,GO:0033262,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035561,GO:0035563,GO:0040007,GO:0042023,GO:0042063,GO:0042065,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045740,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045930,GO:0045931,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048588,GO:0048589,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051276,GO:0051298,GO:0051301,GO:0051303,GO:0051310,GO:0051315,GO:0051383,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051726,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060341,GO:0060429,GO:0061640,GO:0062033,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0071163,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0072708,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140014,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901700,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902595,GO:1903047,GO:1903504,GO:1903506,GO:1903827,GO:1903828,GO:1903829,GO:1905340,GO:1905341,GO:1905342,GO:1905818,GO:1905820,GO:2000105,GO:2000112,GO:2001141,GO:2001176,GO:2001178,GO:2001252
Exons3
Evalue0.000673
EggNOG OGsKOG4762@1|root,KOG4762@2759|Eukaryota,38HTF@33154|Opisthokonta,3BDTD@33208|Metazoa,3CTBB@33213|Bilateria,41V7F@6656|Arthropoda,3SHDM@50557|Insecta,451U1@7147|Diptera,45NKY@7214|Drosophilidae
Ec32 ortholog descriptionCDT1 Geminin-binding domain-like
Ec32 orthologEc-21_005830.1
DescriptionDNA replication factor CDT1 like
Cds size1470
COG categoryL
BRITEko00000,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185875.1604471-CDS-P-wetherbeei_contig10560:271..8661683185875.1604471-CDS-P-wetherbeei_contig10560:271..866Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10560 272..866 -
1683185875.1734505-CDS-P-wetherbeei_contig10560:1091..14941683185875.1734505-CDS-P-wetherbeei_contig10560:1091..1494Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10560 1092..1494 -
1683185875.184811-CDS-P-wetherbeei_contig10560:1845..23171683185875.184811-CDS-P-wetherbeei_contig10560:1845..2317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10560 1846..2317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10560.2.2prot_P-wetherbeei_contig10560.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10560 272..2317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10560.2.2

>prot_P-wetherbeei_contig10560.2.2 ID=prot_P-wetherbeei_contig10560.2.2|Name=mRNA_P-wetherbeei_contig10560.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=490bp
GAALPSSSRVGHTGVESPMSAVGTVGGTPASARAVSTSKGQGPNLLSAEE
RLPEIEGDGDDAARYLLAMVAGDAQTEPPPLAAAAAAVREKLVVSKPADT
SSAGMLQAVFNSLESVMGLFKARREPPTLSKLKAPVERVSGKAFSRAHVD
QILNIYPGAYRLQRIPGRVDGRGRRVTPDDWLVEVPPPEEDEPDKADDGR
GDGGGNSGAVGAVKGAGDRVDGGASIKSGVAGGGGGGGSGSSGGSSGSLG
GGSTCSGASGAARSTSAAQPTLESVVRRRERLGKLLARRVDRLCTCGPST
RPSCQCPVETAVAAVTPASPSPGPAEAVLASSSPYGNGSAALPSAVGTRQ
SGSQNGGNGVANGGSSADGGTGAVNGATNDIVANESGGGSSTDNGDAVAC
GGGGGDGSGGSSGGGNAEAEDTYEAMMNRLRQREAEQQRRLQRPPEAVRT
EQLRRFELPRLADAVRSFFVSLQRSATYFDVIVDDLVRTS
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mRNA from alignment at P-wetherbeei_contig10560:270..2317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10560.2.2 ID=mRNA_P-wetherbeei_contig10560.2.2|Name=mRNA_P-wetherbeei_contig10560.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2048bp|location=Sequence derived from alignment at P-wetherbeei_contig10560:270..2317- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCTGCGTTGCCAAGCTCGTCGCGGGTCGGGCATACGGGCGTGGAGTC GCCCATGTCTGCCGTCGGAACCGTAGGCGGAACGCCAGCGTCCGCTCGTG CCGTATCGACGAGCAAAGGACAGGGCCCAAACCTCCTCTCGGCGGAAGAG CGCTTGCCTGAAATCGAAGGAGATGGCGACGACGCTGCGCGGTACCTGCT CGCCATGGTGGCCGGCGACGCTCAGACGGAACCGCCGCCACTGGCAGCGG CAGCGGCCGCAGTCCGGGAAAAGTTGGTCGTGAGCAAGCCCGCCGACACC TCGTCGGCCGGCATGCTGCAGGCAGTCTTCAACTCATTGGAATCGGTGAT GGGCCTCTTCAAGGCGCGACGGGAGCCCCCCACGCTCTCCAAGCTTAAGG CCCCCGTCGAGCGCGTCTCCGGTAAAGCGTTCTCACGAGCGCACGTCGAC CAAATCCTCAACATCTATCCTGGTGCGTCCATTTCAAAAACTCCGCCGTT TCTGTCAGAGCAACTTAATGGGCTTTCTTGCTTCAAGTATTTTCGCATCC GCTCGATATTCGGAACAGCGCCGCATACCCCTCATCGTGGGGTTTGGCAG CGTAAATATCAAAAAGTGAAAAAAAAAGAAAGTGGCTGGTGACAAAAAAG ATAGGTGATGCGCGGGGCCGCAGAGCTATGCATGTACTCTTTCTTTTCGG CGCGCGCTGCCGTTAGGCGTTGGTTTCTTTCTTCCGAAGTCTTGTTTCGC GGGTTCTCTTTGCATGTTCCCCGCTTTCTTTTCCATGCTCCGGGATGTCG CCCATACGGTCCTCCAACCGCAGGGGCCTACCGCCTGCAGCGCATTCCCG GAAGGGTCGACGGCCGCGGCCGCCGCGTGACGCCCGACGATTGGCTGGTC GAAGTGCCGCCGCCCGAAGAGGATGAGCCTGACAAGGCCGACGATGGACG TGGCGACGGTGGCGGCAATTCTGGGGCCGTCGGGGCCGTCAAGGGTGCTG GCGACCGCGTCGATGGCGGCGCCAGTATTAAGAGCGGGGTTGCTGGCGGT GGTGGTGGCGGCGGCAGCGGCTCCAGCGGCGGCAGCAGTGGCAGCCTTGG CGGCGGCAGCACTTGCAGCGGTGCAAGCGGCGCTGCCAGAAGCACGTCTG CGGCGCAGCCGACGCTTGAGAGCGTGGTACGACGCCGCGAACGGCTCGGA AAGCTGCTAGCAAGGCGCGTAGACAGGTGCAACTTTTGTTCTTTGACTGT GGACGGAATTGATTGTCGAGTTGTGACCAGGAGAACATCCTTGTTTGAGC GGTTACGCCAGTGTGTTACGCCAAACACCTTATGCCGCAACTTGCTTCTG ACCGCATACTTATCGGGCCGCTGATCAAAGCGGCTTGTGAAGTTTGGTTG CGACATCAAATCCGGCCCGTAACTTTCTCTTGCTTCCCCAACGCGGACCA GGCTGTGCACCTGCGGCCCCTCGACGCGTCCATCATGCCAGTGTCCAGTT GAGACCGCAGTGGCGGCCGTGACGCCGGCGTCGCCGTCCCCTGGACCCGC TGAAGCCGTGCTAGCATCGTCATCTCCGTATGGGAACGGGTCTGCCGCAT TGCCATCGGCTGTGGGCACTCGCCAGAGCGGAAGCCAGAACGGTGGCAAC GGGGTGGCTAATGGCGGGAGCAGCGCCGATGGTGGCACCGGTGCTGTCAA CGGCGCCACGAACGACATTGTCGCAAACGAGAGCGGTGGCGGCAGCAGCA CTGACAACGGCGACGCCGTGGCTTGTGGCGGCGGCGGCGGCGACGGCAGC GGCGGCAGCAGCGGCGGCGGGAACGCTGAAGCGGAGGACACCTACGAAGC CATGATGAACCGCCTGCGGCAGCGCGAGGCGGAGCAGCAGCGGCGATTGC AGCGGCCACCCGAGGCGGTGCGGACGGAACAGCTGCGGCGCTTTGAGCTG CCACGGCTGGCGGACGCCGTGCGGTCGTTCTTTGTGTCTCTGCAACGCTC GGCCACCTACTTCGACGTCATCGTCGACGACCTCGTCCGCACCAGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10560:270..2317-

>mRNA_P-wetherbeei_contig10560.2.2 ID=mRNA_P-wetherbeei_contig10560.2.2|Name=mRNA_P-wetherbeei_contig10560.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1470bp|location=Sequence derived from alignment at P-wetherbeei_contig10560:270..2317- (Phaeothamnion wetherbeei SAG_119_79)
GGCGCTGCGTTGCCAAGCTCGTCGCGGGTCGGGCATACGGGCGTGGAGTC
GCCCATGTCTGCCGTCGGAACCGTAGGCGGAACGCCAGCGTCCGCTCGTG
CCGTATCGACGAGCAAAGGACAGGGCCCAAACCTCCTCTCGGCGGAAGAG
CGCTTGCCTGAAATCGAAGGAGATGGCGACGACGCTGCGCGGTACCTGCT
CGCCATGGTGGCCGGCGACGCTCAGACGGAACCGCCGCCACTGGCAGCGG
CAGCGGCCGCAGTCCGGGAAAAGTTGGTCGTGAGCAAGCCCGCCGACACC
TCGTCGGCCGGCATGCTGCAGGCAGTCTTCAACTCATTGGAATCGGTGAT
GGGCCTCTTCAAGGCGCGACGGGAGCCCCCCACGCTCTCCAAGCTTAAGG
CCCCCGTCGAGCGCGTCTCCGGTAAAGCGTTCTCACGAGCGCACGTCGAC
CAAATCCTCAACATCTATCCTGGGGCCTACCGCCTGCAGCGCATTCCCGG
AAGGGTCGACGGCCGCGGCCGCCGCGTGACGCCCGACGATTGGCTGGTCG
AAGTGCCGCCGCCCGAAGAGGATGAGCCTGACAAGGCCGACGATGGACGT
GGCGACGGTGGCGGCAATTCTGGGGCCGTCGGGGCCGTCAAGGGTGCTGG
CGACCGCGTCGATGGCGGCGCCAGTATTAAGAGCGGGGTTGCTGGCGGTG
GTGGTGGCGGCGGCAGCGGCTCCAGCGGCGGCAGCAGTGGCAGCCTTGGC
GGCGGCAGCACTTGCAGCGGTGCAAGCGGCGCTGCCAGAAGCACGTCTGC
GGCGCAGCCGACGCTTGAGAGCGTGGTACGACGCCGCGAACGGCTCGGAA
AGCTGCTAGCAAGGCGCGTAGACAGGCTGTGCACCTGCGGCCCCTCGACG
CGTCCATCATGCCAGTGTCCAGTTGAGACCGCAGTGGCGGCCGTGACGCC
GGCGTCGCCGTCCCCTGGACCCGCTGAAGCCGTGCTAGCATCGTCATCTC
CGTATGGGAACGGGTCTGCCGCATTGCCATCGGCTGTGGGCACTCGCCAG
AGCGGAAGCCAGAACGGTGGCAACGGGGTGGCTAATGGCGGGAGCAGCGC
CGATGGTGGCACCGGTGCTGTCAACGGCGCCACGAACGACATTGTCGCAA
ACGAGAGCGGTGGCGGCAGCAGCACTGACAACGGCGACGCCGTGGCTTGT
GGCGGCGGCGGCGGCGACGGCAGCGGCGGCAGCAGCGGCGGCGGGAACGC
TGAAGCGGAGGACACCTACGAAGCCATGATGAACCGCCTGCGGCAGCGCG
AGGCGGAGCAGCAGCGGCGATTGCAGCGGCCACCCGAGGCGGTGCGGACG
GAACAGCTGCGGCGCTTTGAGCTGCCACGGCTGGCGGACGCCGTGCGGTC
GTTCTTTGTGTCTCTGCAACGCTCGGCCACCTACTTCGACGTCATCGTCG
ACGACCTCGTCCGCACCAGC
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