mRNA_P-wetherbeei_contig10542.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10542.1.1
Unique NamemRNA_P-wetherbeei_contig10542.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A836C7A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7A2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.640e-13
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  362 AARLKKLGQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPPKILQLNIGLYCNQ 544
            AARL+ LG A+MTLEEKK RRRAL +LGLP F+ +L ++ LA+ R    ILQLNIGLYCNQ
Sbjct:   76 AARLRALGAARMTLEEKKLRRRALDELGLPSFQQYLARAGLAVPRATSTILQLNIGLYCNQ 136          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A7S2WVW2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVW2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.980e-13
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 2
Query:  383 GQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPPKILQLNIGLYCNQ 544
            G+ K++LEE+K RRR L DLG+PGFR F+ Q NLAI R P +ILQLNIGLYCNQ
Sbjct:   80 GRQKLSLEERKARRRLLSDLGVPGFRDFITQQNLAIQRKPAEILQLNIGLYCNQ 133          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A7S4NJP5_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NJP5_9EUKA)

HSP 1 Score: 70.1 bits (170), Expect = 8.100e-11
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  362 AARLKKLGQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPPKILQLNIGLYCNQ 544
            A +L+K+G   M+LEE+K+RRRAL  L +P F  FL++  L +TR  P ILQLNIGLYCNQ
Sbjct:   92 AEQLRKIGAKAMSLEERKKRRRALDALQIPQFHEFLEKKKLEVTRKSPSILQLNIGLYCNQ 152          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A0G4G9C3_VITBC (Radical SAM core domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G9C3_VITBC)

HSP 1 Score: 70.1 bits (170), Expect = 8.110e-11
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  371 LKKLGQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPP-KILQLNIGLYCNQ 544
            LKK GQ +++LEEKK+RRRALH LGLPGF  FL+Q N+ + +      LQ+NIGLYCNQ
Sbjct:   90 LKKFGQKRLSLEEKKKRRRALHHLGLPGFDDFLRQRNIPLLKRDTVTTLQVNIGLYCNQ 148          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: L1IC20_GUITC (Uncharacterized protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1IC20_GUITC)

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-10
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  362 AARLKKLGQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPPKILQLNIGLYCNQ 544
            A  LK+LGQ ++T+EE+K RRRAL +LG+P F  FL   N+++ +   +ILQLNIGLYCNQ
Sbjct:  104 ARNLKELGQQRLTMEERKNRRRALDNLGVPSFDKFLADRNVSLKKSEVEILQLNIGLYCNQ 164          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A7S0H1F3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H1F3_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.710e-10
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  362 AARLKKLGQAKMTLEEKKQRRRALHDLGLPGFRHFLQQS--NLAITRLPPKILQLNIGLYCNQ 544
            A RLK++G  KM+LEE+KQRRRAL  LG+P F  FL+++  ++ + R P +I QLNIGLYCNQ
Sbjct:  103 AKRLKEMGAKKMSLEERKQRRRALDKLGVPDFAEFLEKNAPSVKLQRKPAEIFQLNIGLYCNQ 165          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: D7FPQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ5_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 2.810e-10
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  362 AARLKKLGQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPPKILQLNIGLYCNQ 544
            AA+LK++GQ K+TLEEKK RRRAL D  LP F+  +Q+  + I R    I QLNIGL+CNQ
Sbjct:  108 AAKLKQMGQKKLTLEEKKIRRRALKDRNLPSFQQHVQEQGIKINRESSTIFQLNIGLFCNQ 168          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A7S2AR26_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AR26_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.980e-10
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 2
Query:  383 GQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPPKILQLNIGLYCNQ 544
            GQ K++LEE+K RRRAL +LG+P F+ F++Q  +   R P +I QLNIGLYCNQ
Sbjct:    3 GQKKLSLEERKIRRRALSELGIPDFKEFIKQQGVQAVRAPAEIFQLNIGLYCNQ 56          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A1Y1HHY5_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HHY5_KLENI)

HSP 1 Score: 67.8 bits (164), Expect = 4.650e-10
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  383 GQAKMTLEEKKQRRRALHDLGLPGFRHFLQQSNLA-ITRLPPKILQLNIGLYCNQ 544
            GQA +T EE+K+RRRAL +LG+P F HFL++  L+ +TR P   LQLNIGLYCNQ
Sbjct:   49 GQAALTAEERKKRRRALDNLGVPSFDHFLKEQGLSPLTRKPVTTLQLNIGLYCNQ 103          
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Match: A0A8J2SJC1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJC1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.710e-9
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  362 AARLKKLGQAKMTLEEKKQRRRALHDLGLPGF-RHFLQQSNLAITRLPPKILQLNIGLYCNQ 544
            A +L++ GQ K+TLEEK++RRR L +LG P F  H LQQ+    TR   ++LQLNIGLYCNQ
Sbjct:   98 AKKLRESGQRKLTLEEKQRRRRCLEELGAPEFTEHLLQQAGCDGTRFATEVLQLNIGLYCNQ 159          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10542.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7A2_9STRA1.640e-1365.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WVW2_9STRA2.980e-1368.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4NJP5_9EUKA8.100e-1157.38Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0G4G9C3_VITBC8.110e-1161.02Radical SAM core domain-containing protein n=1 Tax... [more]
L1IC20_GUITC1.500e-1055.74Uncharacterized protein n=2 Tax=Geminigeraceae Tax... [more]
A0A7S0H1F3_9EUKA1.710e-1057.14Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
D7FPQ5_ECTSI2.810e-1057.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AR26_9STRA3.980e-1057.41Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Y1HHY5_KLENI4.650e-1061.82Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A8J2SJC1_9STRA1.710e-956.45Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10542contigP-wetherbeei_contig10542:1299..2071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227086.JGI_V11_55107
PFAMsDUF3641,Fer4_12,Radical_SAM
Model size548
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.3e-13
EggNOG OGsCOG0535@1|root,2QWFM@2759|Eukaryota
DescriptionProtein of unknown function (DUF3641)
Cds size294
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.4026248-UTR-P-wetherbeei_contig10542:1298..15511683185874.4026248-UTR-P-wetherbeei_contig10542:1298..1551Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10542 1299..1551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185874.4130833-CDS-P-wetherbeei_contig10542:1551..17751683185874.4130833-CDS-P-wetherbeei_contig10542:1551..1775Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10542 1552..1775 +
1683185874.4219995-CDS-P-wetherbeei_contig10542:2001..20711683185874.4219995-CDS-P-wetherbeei_contig10542:2001..2071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10542 2002..2071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10542.1.1prot_P-wetherbeei_contig10542.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10542 1552..2071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10542.1.1

>prot_P-wetherbeei_contig10542.1.1 ID=prot_P-wetherbeei_contig10542.1.1|Name=mRNA_P-wetherbeei_contig10542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
MLCSVPHSAVSPAEPAASCSVRSRLIRAVRSFSSSAAARLKKLGQAKMTL
EEKKQRRRALHDLGLPGFRHFLQQSNLAITRLPPKILQLNIGLYCNQV
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mRNA from alignment at P-wetherbeei_contig10542:1299..2071+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10542.1.1 ID=mRNA_P-wetherbeei_contig10542.1.1|Name=mRNA_P-wetherbeei_contig10542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=773bp|location=Sequence derived from alignment at P-wetherbeei_contig10542:1299..2071+ (Phaeothamnion wetherbeei SAG_119_79)
AAGAGGATGAGGAATTCCAGATCACAGGTGTGTCATTTTGTGGTCCCTTC CCGAATCGCTTTGCTCTTCCTTGTCTTCCATGGTGGCTGAAATTTTGACA GCAATGCATGGGCGCAGTAGTGATTGACCTTGAACCTTTTCAGCTTCCGG ACCTTCGTTACGTTTCGATTGTTGTCTCTCTCGTCGGTCCGCCATTGGAA GCGGGTAGCAGCCGCCACGCATCTTTTCCCTCCTAATCTATCCTCTGGGA TAAATGTTATGCTCCGTGCCCCATTCAGCTGTTTCACCTGCAGAACCTGC CGCTTCCTGCTCTGTCCGTTCCAGATTGATCCGTGCTGTTCGCTCTTTCT CTTCCTCTGCAGCGGCCCGACTAAAGAAGCTCGGTCAGGCAAAAATGACG CTGGAGGAAAAAAAACAGCGGAGACGGGCGCTGCACGACCTCGGCCTGCC AGGGTTCCGCCACTTCCTGCAGCAAAGGTGGGTCCATCAGCTGGCGGTTT TGGCTGTCGCAGCGGAGGCAGTGACATGCAGCGAAGATCAAGCAGCAGCG GCAGGTGGCGGCGGCAGGCACCGATGGACATGCAGCAACAGGTAGAATCG TATTTGGGGCCGAATATGTAGTAAGTCGTTCATGTAGCATTCTGAGAATT GGCAGTTGCGCCATTTCCCTTGCTATGTTTCGCCCCGCTTGCGCCACCTG CAGCAATCTTGCTATCACCCGGCTACCGCCAAAGATTCTGCAGCTTAATA TCGGCCTCTACTGCAACCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10542:1299..2071+

>mRNA_P-wetherbeei_contig10542.1.1 ID=mRNA_P-wetherbeei_contig10542.1.1|Name=mRNA_P-wetherbeei_contig10542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig10542:1299..2071+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTATGCTCCGTGCCCCATTCAGCTGTTTCACCTGCAGAACCTGCCGC
TTCCTGCTCTGTCCGTTCCAGATTGATCCGTGCTGTTCGCTCTTTCTCTT
CCTCTGCAGCGGCCCGACTAAAGAAGCTCGGTCAGGCAAAAATGACGCTG
GAGGAAAAAAAACAGCGGAGACGGGCGCTGCACGACCTCGGCCTGCCAGG
GTTCCGCCACTTCCTGCAGCAAAGCAATCTTGCTATCACCCGGCTACCGC
CAAAGATTCTGCAGCTTAATATCGGCCTCTACTGCAACCAGGTG
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