mRNA_P-wetherbeei_contig10500.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10500.1.1
Unique NamemRNA_P-wetherbeei_contig10500.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A836CCL2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCL2_9STRA)

HSP 1 Score: 233 bits (593), Expect = 5.560e-66
Identity = 134/304 (44.08%), Postives = 172/304 (56.58%), Query Frame = 1
Query:    1 GHVQVLVMLIQMGMS------------------VNDRDAYGQTPLHLASLRGNLDTVEYLVLEAK-------TDVCIADKNGKTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGE-------GAQGKLWPLLLNVGSMSFVGVVMFTRFFSEAWMELGQDA-LLTAAIVSQLAVWLLLLLIYFSDPGYIHVTKDSSLRQAYNKRLEMLLNPEDETSVSPVLSEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYIVMFVVGSAS 813
            GH  V+VML++                      V+ RDA+GQ+PLHLA+LRG+LD VEYLVLEA         D    DK  KT LDLA+KK    VE FLR    G +   P   LE LR P L K +   G+       GAQG LWP +LNVGS SFVG  M TRFF   ++     A ++TAA  + + +W+ L  + FSDPG+I   ++ +L   + KR+E LL  E      P        LCYTC LERP+R+KHCRVCRRCV CFDHHC FV NC+G  NY +F++Y+V F+  + +
Sbjct: 1322 GHTPVMVMLLKXXXXXXXXXXXXXXXXXXXXXXVDARDAHGQSPLHLAALRGHLDAVEYLVLEANYLVLDANADTQAKDKYEKTPLDLAVKKHMVDVEWFLRTQSAGGA-AKPAMLLECLRRPALIKTMCAMGQXXXXXXQGAQGALWPYILNVGSSSFVGGAMVTRFFDARFLYTPFAASIVTAAFTAYVMMWVFLGAVRFSDPGFISAQQEPALSANFKKRMETLLEEEAGEGQGPE-GLPTGPLCYTCSLERPIRAKHCRVCRRCVRCFDHHCAFVRNCIGLRNYSYFYLYLVFFLAATVT 1623          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: D7FSB4_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSB4_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 2.090e-65
Identity = 117/255 (45.88%), Postives = 153/255 (60.00%), Query Frame = 1
Query:  103 NLDTVEYLVLEAKTDVCIADKNGKTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGEGAQGKLWPLLLNVGSMSFVGVVMFTRFFSEAWMELGQDALLTAAIVSQLAVWLLLLLIYFSDPGYIHVTKDSSLRQAYNKRLEMLLNP--------------EDETSVSPVLSEDQASL----CYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYIVMFVVGSAS 813
            N D  EYLV EAK +V   DK  +T LDLA+KK++ ++E+FLR +G G+SW +P   L+  R P L +A  +TGEG QG  WPL LN+  M F   V   RFF E ++ LG D LL  + VSQL +WL   L + S+PG++  T D  +  A+++R+ +L                 ED TS    L     S+    CYTC +ERPLRS+HCR CRRCV  FDHHCPFVGNCVG  NYRWFF+Y++  V  + S
Sbjct:  339 NRDAAEYLVFEAKANVNARDKKNETPLDLALKKKQSSMELFLRTSGAGQSWLSPAVFLKLARTPTLWRAACETGEGLQGAGWPLPLNLVLMGFAMWVTTQRFFGEEFLSLGHDMLLLVSTVSQLLLWLSFFLTWVSNPGFVDPT-DPKVSFAFHRRVRVLTGKKADHXXXXXXXXDVEDPTSSLMRLESGAGSVSSSACYTCAIERPLRSRHCRNCRRCVRAFDHHCPFVGNCVGAGNYRWFFLYVIFLVASTVS 592          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A7S4DBI5_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBI5_HETAK)

HSP 1 Score: 164 bits (415), Expect = 4.220e-44
Identity = 91/232 (39.22%), Postives = 134/232 (57.76%), Query Frame = 1
Query:  106 LDTVEYLVLEAKTDVCIADKNGKTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGEGAQGKLWPLLLNVGSMSFVGVVMFTRFFSEAWMELGQDAL-LTAAIVSQLAVWLLLLLIYFSDPGYIHVTKDSSLRQAYNKRLEMLLNPED-ETSVSPVLSEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYIVMF 795
            L  +E+L L  + D+ I DK GKT LDLAI+K+K A E FLR  G  + W +     + +      K +   G GA+   WP  L  GSM+F   +++ +      +E+G  +  L  A+    A+W  L L    DPG++    D++L+Q Y +RLEM+ + +  ET +         +LC+TC +ERPLR+KHC+ CRRCV  FDHHCPF G C+ + NYRWFF+++V+F
Sbjct:  111 LAALEHLTLNMRVDLTIKDKKGKTPLDLAIEKKKFACEKFLREQG--KRWEDRLFAFKAVFTKDFLKILVTGGRGAESAAWPFYLMTGSMAFYSALLYVKLLC---VEMGPHSFALMLALALFAAMWTFLFLCR-RDPGFVD-DGDNTLKQGYEERLEMMADFDKFETKLGV---RRYRALCHTCNIERPLRAKHCKACRRCVRIFDHHCPFTGCCIARRNYRWFFIFVVLF 332          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A7S1GKG9_CYCTE (Palmitoyltransferase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GKG9_CYCTE)

HSP 1 Score: 144 bits (363), Expect = 5.100e-36
Identity = 98/274 (35.77%), Postives = 139/274 (50.73%), Query Frame = 1
Query:   58 DAYGQTPLHLASLRGNLDTVEYLVLEA-----KTDVCIADKNGKTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGEGAQGKLW-------PLLLNVGSMSFVGVVMFTRFFSEAWMEL----------------GQDALLTAAIVSQLAVWLLLLLIYFSDPGYIHVT--KDSSLRQAYNKRLEMLLNPEDETSVSPVLSEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYIV 789
            DAYGQTPLHLASLRG+  TV YL+ E      K  + + DKNGKT LDLA+ +++P VE  LR      + F P     F+R  R     F +      K+W         +     + F   V+   FF  AW  +                G  AL    + S +A++  L   + +DPG +     K + LR+ Y + LE   + E+        ++ +A+LC+TC + RPLRSKHCR  RRC+  FDHHCPFVGN +G  NY+WF++ ++
Sbjct:  160 DAYGQTPLHLASLRGHTTTVRYLLQEGTRTERKQMLFLRDKNGKTPLDLAVHRKRPTVEAVLRE---AMAAFEPSRG-NFIRRIRATLRQFFSLHS--WKIWIGCHASNDEVDEAPKLPFYWFVIHL-FFYTAWYPMVFLPLDQSKGIMYDLMGWHAL---NLASMIALYFCLYKTHVTDPGTLDANHPKVAELRRLYEQTLESYADEEN-------FAKPKAALCHTCHIARPLRSKHCRTTRRCILMFDHHCPFVGNTIGLQNYKWFYLMLL 416          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A7S2PME3_9STRA (Palmitoyltransferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PME3_9STRA)

HSP 1 Score: 130 bits (328), Expect = 6.800e-32
Identity = 94/275 (34.18%), Postives = 140/275 (50.91%), Query Frame = 1
Query:   88 ASLRGNLDTVEYLVLEAKTDVC-IADKNGKTALDLAIKKQKP---------AVEIFLRANGTGR--SWFNPGGCLEFLRHPRLCKAVFQTGEGAQGKLWPLLLNVGSMSFVGVVMFTRFF-SEAW-MELGQDALLTAAIVSQLAVWLLLLLIYFSDPGYIHVTKD--------SSLRQAYNK--------RLEMLLNPEDETSVSPV---LSEDQA----SLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYIVMFVV 801
            A+LRGN D V+YL+ EA ++   ++D  GKT LDLA+KK++          A  I+  ++ + R  S+F         +   +       G G+  +L P LLNV SMS  G +   R+F +E + M +    +L    V    +W+L    Y ++PG + V  +        S  R  + K        +L + L  + ET+V  +   + E  A     LC++C + +PLRSKHCRV R+CV  FDH CPFVGNCVG  NY +F+ Y V FV+
Sbjct:    1 AALRGNTDVVQYLLYEAGSEAYRVSDSEGKTPLDLAVKKKQKGTILILESYAKTIYANSSASNRVFSFFKQMCSFREWKMWMVGGGTGDVGNGSNSRL-PFLLNVSSMSLAGTLFPLRYFLAENYAMMVDHSGILMYTFVVYCIMWVLFYFTYTTNPGILEVEDENQSKNRLFSRQRSQHRKTSTTKLLSQLTLDLQKQYETAVENMGKDIGEGGAVMTPPLCHSCHIVKPLRSKHCRVMRKCVLMFDHFCPFVGNCVGLFNYPYFYGYCVFFVL 274          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A7S2Q3P8_9STRA (Palmitoyltransferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3P8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.260e-31
Identity = 105/350 (30.00%), Postives = 164/350 (46.86%), Query Frame = 1
Query:    1 GHVQVLVMLIQM-GMS--VNDRDAYGQTPLHLASLRGNLDTVEYLVLEAKTD-------------------------------------VCIADKNGKTALDLAIKKQKPAVEIFL-----RANGTGRSWFNP-GGCLEFLRHPRLCKAVFQTGEGA----QGKLWPLLLNVGSMSFVGVVMFTRFFS-EAWMELGQDALLTAA-------IVSQLAVWLLLLLIYFSDPGYIHV---------------------------TKDSSLRQAYNKRLEMLLNPEDETSVSPVLSEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYIVMF 795
            G V+V  ML+ M G+   ++ +DA+GQ+P+HLASLRGN++T+ YL+ EA++                                      + + DK+GKT L LAIKK+K   E+ L     R     RS+F+  GG  + L   R  KA      G     Q   +P      ++ F G+  FT+F    A  +   DA+L          I+S +A W  L  +Y ++PG +                             T+ +S+   Y ++ + ++    ++  S   SE++  LC+TC++ +P+RSKHCRV RRCV  FDHHCPFVG  +G  NY +F++++  F
Sbjct:    8 GSVEVCGMLLHMLGVEGHLDSQDAFGQSPVHLASLRGNVETLRYLLEEAESVGKNAAATGDRSILSAAGRVGSKIASSSSTFSKYTASLLRMEDKDGKTPLGLAIKKKKLGTEMLLHEYEERYIRPKRSFFSQVGGTCKDLISIRTWKAWMGMSGGELPHNQNPTFPFYWMTMNILFGGIFYFTQFIGIGAKGQFRSDAMLLDKFNIHVFFIISFIATWTSLYKVYTTNPGVLDAQGGVDSSSSATCKVFCCSGGYAKDKISTEMTSVTNEYRRKYDEVIESFGKSVPS---SEERVPLCHTCRIVKPMRSKHCRVARRCVLNFDHHCPFVGTTIGLYNYIYFYLFLACF 354          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: UPI000C794211 (probable protein S-acyltransferase 23 isoform X1 n=3 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C794211)

HSP 1 Score: 124 bits (310), Expect = 1.690e-28
Identity = 87/264 (32.95%), Postives = 127/264 (48.11%), Query Frame = 1
Query:    1 GHVQVLVMLIQMGMSVNDRDAYGQTPLHLASLRGNLDTVEYLVLEAKTDVCIADKNGKTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGEGAQGKLWPLLLNVGSMSFVGVVM-FTRFFSEAW--MELGQDALLTAAIVSQLAVWLLLLLIYFSDPGYIHVTKDSSLRQAYNKRLEMLLNPEDETSVSPVLSEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMY 783
            G+  ++ MLI  G      D +G +PLHLA + GNL  V+ L  +   D+   D+N KT LDLA K     +  FL +    R+ F P     FL    +   VF      +G   PLL  +GS+      M F R     W  + +   + LT  ++    +W+ L+     +PG++    D    + +N   ++    E +    P    D   LC+TC+  RPLR+KHCRVC RCV  FDHHCP++ NCVG  N  WF ++
Sbjct:  222 GYPGLMQMLIYSGFDPQKPDNFGSSPLHLACISGNLSAVKLLCAKNSVDLEPRDRNRKTPLDLAAKHGHQDIMKFLESEKRRRTTFLP----VFLD---IWTVVFGQSGRTKG---PLLFFLGSVLLWAYPMYFLRCVPVTWDLLPVTHYSFLTVNLI----MWISLIFSNRRNPGFLPQNTD----EYHNAIKQIAYYDEWKHHRGP----DIMRLCHTCRSVRPLRAKHCRVCDRCVAQFDHHCPYISNCVGLRNRGWFLLF 463          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A7S2XU17_9STRA (Palmitoyltransferase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU17_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.240e-28
Identity = 94/297 (31.65%), Postives = 130/297 (43.77%), Query Frame = 1
Query:   58 DAYGQTPLHLASLRGNLDTVEYLVLEAKTD---------VCIADKNGKTALDLAIKKQKPAVEIFLR---------ANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGEGAQ-----GKLWPLLLNVGSMSFVGV---VMFTRFFSEAWMELG----QDALLTAAIVSQLAVWLLLLLIYFSDPGYIHVTKDSS--------------------------------LRQAYNKRLEMLLNPEDETSVSPVLSEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSN 762
            DA+GQTPLHLASLRGN+D ++YL+ EA+           +   DK+GKT LDLAIKK K   ++ L+         ++     W      +      +  K      EG+         +P    V   +   +   + F   F E  ME G       L    +VS   +W+  LL +F+DPG I V+   +                                LR  YN+ LE   +       S + S+   SLC++C + RPLRSKHCR  RRCV  FDH CPFVGN +G S+
Sbjct:  270 DAFGQTPLHLASLRGNVDVIQYLLEEAELAGSRAAVARLLTATDKDGKTPLDLAIKKNKATSQLLLKQYMDRYCTSSSSNYSLWTKCKSGMSDFCSLKAWKVWMGMDEGSMMMGGASPQFPFYFVVTLQTCAALFYPIYFIPVFGENAMERGVLWDTMGLHMFTLVSMTFMWIFYLLTFFTDPGAIAVSSTGTSXXXXXXXXXXXXXXXNDNASIQQEMRQVTQQLRDKYNQVLEAYGDETFSPEKSKLASQ---SLCHSCHIARPLRSKHCRTMRRCVLMFDHMCPFVGNTIGSSH 563          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A7S4C6X2_CHRCT (Palmitoyltransferase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C6X2_CHRCT)

HSP 1 Score: 123 bits (309), Expect = 2.270e-28
Identity = 84/266 (31.58%), Postives = 133/266 (50.00%), Query Frame = 1
Query:    1 GHVQVLVMLIQMGMSVNDRDAYGQTPLHLASLRGNLDTVEYLVLEAKTD--VCIADKNGKTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGEGAQGKLWPLLLN--VGSMSFVGVVMFTRFFSEAWMELGQDALLTAAIVSQLAVWLLLLLIYFSDPGYIHVTKDSSLRQAYNKRLEMLLNPEDETSVSPVLSEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYI 786
            G+ Q + +L  +G+  + +D+YG TPLHLA+ +G    VEYL+  ++ +  V I D  G+T +D+A ++    V   L A        NP      L            G+G +  L+   +   VGSM F     +  + S     + QDALL A  V    + +  +  Y  +PG   +  +    Q Y + LE+  +   + +      E+  SLC+TC++ RPLRSKHC+  +RCV  FDHHCP+V N +G +NYR F +++
Sbjct:  200 GNQQTVALLHYLGLPADAQDSYGSTPLHLATSQGASSVVEYLLESSEVESLVQIRDAKGRTPMDVAAQRGHKHVLKQLNA-------LNPSALQRTLG--------IVMGDGGEKALFLFFIADAVGSMIF-----YLCYLSPVVESMAQDALLVALFV---VMMMFHVASYVLEPG--RIATEGKPHQLYRQALELAASGRVDEA------EEIGSLCHTCRIARPLRSKHCQTLKRCVSVFDHHCPYVHNTLGANNYRPFVIFL 434          
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Match: A0A662XIG0_9STRA (Palmitoyltransferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XIG0_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.240e-27
Identity = 81/280 (28.93%), Postives = 134/280 (47.86%), Query Frame = 1
Query:    1 GHVQVLVMLIQMGMSVNDRDAYGQTPLHLASLRGNLDTVEYLVLEAKTDVCIADKNGKTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQTGEGAQGKLWPLLLNVGSMSFVGVVMFTRFFSEAWMELGQDALLTAAIVSQLAVWLLLLLIYFSDPGYIHVTKDSSLR-QAYNKRLEMLLNPED----ETSVSPVLSEDQAS-----LCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRWFFMYIVMFVVGSA 810
            G  +++ +   +G+S +  D +GQTPLHLA++RG L TV++LV     DV   D   +T  DLA+ K    V  +L+      + +N            +    +    G++   +  +LN    + V ++++      A  +  +  ++   +   +  W        + PG     +DS    QAY++  E L+N ++    E +    L+  Q       LC+TC ++RP R+KHCRVC+ CV  FDHHCPFV NCVG+ NY  F +++    V  A
Sbjct:  226 GATEIVAVFQYLGVSSDAPDRFGQTPLHLAAMRGELSTVQFLVETLDADVQALDARKRTPRDLAVLKYHQDVARYLKRRELRVAAWN------------VAAFTWWCDSGSRAPYYFTILN----AVVTLLLYVLVVLPAMPD--RRGVMVPHLTWNVVTWFFFYRTVTTKPG--SAPEDSERHAQAYDQVTEALINGDEDGEAEKAGESALARAQRQCLERPLCHTCHIQRPPRAKHCRVCKTCVPVFDHHCPFVDNCVGRDNYVVFLLFVTFLAVDLA 485          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10500.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CCL2_9STRA5.560e-6644.08Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
D7FSB4_ECTSI2.090e-6545.88Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S4DBI5_HETAK4.220e-4439.22Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1GKG9_CYCTE5.100e-3635.77Palmitoyltransferase n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2PME3_9STRA6.800e-3234.18Palmitoyltransferase n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2Q3P8_9STRA1.260e-3130.00Palmitoyltransferase n=1 Tax=Skeletonema marinoi T... [more]
UPI000C7942111.690e-2832.95probable protein S-acyltransferase 23 isoform X1 n... [more]
A0A7S2XU17_9STRA2.240e-2831.65Palmitoyltransferase n=1 Tax=Attheya septentrional... [more]
A0A7S4C6X2_CHRCT2.270e-2831.58Palmitoyltransferase n=1 Tax=Chrysotila carterae T... [more]
A0A662XIG0_9STRA1.240e-2728.93Palmitoyltransferase n=2 Tax=Nothophytophthora sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10500contigP-wetherbeei_contig10500:313..2257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSB4
PFAMsAnk_2,Ank_4,DHHC
Model size825
Max annot lvl2759|Eukaryota
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.68e-66
EggNOG OGsCOG5273@1|root,KOG0509@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size804
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10500.1.1prot_P-wetherbeei_contig10500.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10500 334..2257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.6992261-UTR-P-wetherbeei_contig10500:312..3331683185872.6992261-UTR-P-wetherbeei_contig10500:312..333Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10500 313..333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.711053-CDS-P-wetherbeei_contig10500:333..4641683185872.711053-CDS-P-wetherbeei_contig10500:333..464Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10500 334..464 +
1683185872.7222452-CDS-P-wetherbeei_contig10500:718..8201683185872.7222452-CDS-P-wetherbeei_contig10500:718..820Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10500 719..820 +
1683185872.7298026-CDS-P-wetherbeei_contig10500:980..11141683185872.7298026-CDS-P-wetherbeei_contig10500:980..1114Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10500 981..1114 +
1683185872.738731-CDS-P-wetherbeei_contig10500:1350..15171683185872.738731-CDS-P-wetherbeei_contig10500:1350..1517Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10500 1351..1517 +
1683185872.7480876-CDS-P-wetherbeei_contig10500:1729..19021683185872.7480876-CDS-P-wetherbeei_contig10500:1729..1902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10500 1730..1902 +
1683185872.7555027-CDS-P-wetherbeei_contig10500:2160..22571683185872.7555027-CDS-P-wetherbeei_contig10500:2160..2257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10500 2161..2257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10500.1.1

>prot_P-wetherbeei_contig10500.1.1 ID=prot_P-wetherbeei_contig10500.1.1|Name=mRNA_P-wetherbeei_contig10500.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=268bp
MLIQMGMSVNDRDAYGQTPLHLASLRGNLDTVEYLVLEAKTDVCIADKNG
KTALDLAIKKQKPAVEIFLRANGTGRSWFNPGGCLEFLRHPRLCKAVFQT
GEGAQGKLWPLLLNVGSMSFVGVVMFTRFFSEAWMELGQDALLTAAIVSQ
LAVWLLLLLIYFSDPGYIHVTKDSSLRQAYNKRLEMLLNPEDETSVSPVL
SEDQASLCYTCQLERPLRSKHCRVCRRCVGCFDHHCPFVGNCVGKSNYRW
FFMYIVMFVVGSASWWSM
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mRNA from alignment at P-wetherbeei_contig10500:313..2257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10500.1.1 ID=mRNA_P-wetherbeei_contig10500.1.1|Name=mRNA_P-wetherbeei_contig10500.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1945bp|location=Sequence derived from alignment at P-wetherbeei_contig10500:313..2257+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCACGTGCAGGTGCTGGTGATGCTGATCCAGATGGGTATGTCGGTGAA CGACCGCGACGCCTACGGACAGACGCCGCTCCACCTCGCCTCGCTGCGAG GAAACCTCGACACCGTCGAGTACCTCGTCCTCGAGGCCAAGACTGACGTT TGGTCAGTTTTAATCCAATGCAGGCAGTACAGGCAATCCAGGATGAGCGG TTCAGAAAATCGGTTGTGATGTGGATATTAGGTGAACGGTGATGCGTTGC ATTACGCTATTGAGGTTATTGAACGGCTCTTTTATGTGGGTAACAATCGC TGGAGCGTCGAGCGGGCGATGTATTGAAATATATTATCGATTTTCGCGTC GAACCAGGATTCTTACACTAGTTCACGCTGGACCATCTAAAACCACCCCT CTGCAGCATTGCCGACAAGAACGGCAAGACAGCGCTCGACTTGGCGATTA AAAAGCAGAAGCCGGCGGTCGAAATCTTTTTGAGAGCCAACGGGACGGGG CGAAGCTGGTGAGTCCGCCTCGTCATTCATAGCTGCTCGGTTTCTTTACA CTTTCTTCTTATGAAAGAAGTGAGGCGAAAGCGAGGACTTACGCTGATTA TACTCCTGCGTAGTGTGGGGTTGGCATGTGACTGATGGCATGGAGAGGTC TTGTCTGTCTCGTGGCAGGTTCAACCCGGGGGGCTGTCTGGAGTTCTTGA GGCACCCGCGGCTGTGCAAGGCGGTCTTCCAGACGGGGGAAGGCGCGCAG GGCAAGCTCTGGCCGCTTCTGCTCAACGTCGGCTCCATGAGCTTCGTCGG TGGTACGTGTAACTGGCCTTTCGGTCCATCGATCAGCTTGGGATCAGCTT GGGTCGGTCCTTGCGGAGGAATGGTGCCATGAAACTTAATTCTAGGTCGG GTGCAGCTTTATGCAACCAAACTGACGCGCCGAGTGTTGTGGGGAAAGCA TATTTTCTTCCCCTGTCCGTGTGTTTTGGAAGTTAACGTGATTGCTTTTT GCCTTTCTGCTTTGCTCTCCTGCCACGCCCCGCAACAGTGGTGATGTTTA CGCGCTTCTTCAGCGAGGCGTGGATGGAGCTGGGCCAGGACGCACTGCTG ACGGCGGCTATCGTGAGCCAGCTGGCCGTGTGGTTGCTGCTGCTCCTCAT CTACTTTTCCGACCCCGGCTACATTCATGTCACCAAGGACTCCTCGCTCA GACAGGTAAATTTAGGGTAAATTAGTTGTAGGCGGGCCCGCGGATCGGAT TGGAACGCTGGACGTGATCTTGTCTGAGGCACACAGTACTCTTCTCTGAA GAGGCGCGTACGGCTGTGCTCTAGTGGAAGCTGTTTTTTAACCTCCTCTG AAGTTGCCGCCGCTGTTGCTGCAGTTTGTTGTCTTTCTGCTCGCCACCTG TTCATTCGCTGCTGCAGGCGTACAATAAGCGGCTGGAGATGCTGCTGAAC CCGGAGGATGAGACGAGCGTCTCGCCGGTGCTAAGCGAAGACCAGGCATC CCTGTGCTACACGTGCCAGCTTGAGCGCCCGCTGCGCAGCAAGCACTGCC GCGTCTGCCGCCGCTGCGTCGGCTGCTTCGACCACCACTGGTGCGTCCAT CCTGCGTGCCCTCTGCCTCATGTTGCCTTTCGTCGCATTGCCGTTGGACT TTGCTGCAGCCGCCAAGTGCTGCTGCTGCCACCAATTGCTGCTGCTACCG GTTGCTGGTACCGCCGCGGCGGCGGCAGCTGCGGCGTTGGCTGGCACCAG TTTTCTCTTTGTGTGACTGCGTTTCTTCTACAGGAGCAATGATTATAACC CGTGTTGACTAACCCACTTCATATCCCTCTTTCAATCCGTGTGATTAGTC CTTTCGTGGGCAACTGCGTGGGCAAGTCGAACTACCGATGGTTCTTCATG TACATCGTCATGTTCGTCGTCGGGTCAGCCAGCTGGTGGTCGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10500:313..2257+

>mRNA_P-wetherbeei_contig10500.1.1 ID=mRNA_P-wetherbeei_contig10500.1.1|Name=mRNA_P-wetherbeei_contig10500.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=804bp|location=Sequence derived from alignment at P-wetherbeei_contig10500:313..2257+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGATCCAGATGGGTATGTCGGTGAACGACCGCGACGCCTACGGACA
GACGCCGCTCCACCTCGCCTCGCTGCGAGGAAACCTCGACACCGTCGAGT
ACCTCGTCCTCGAGGCCAAGACTGACGTTTGCATTGCCGACAAGAACGGC
AAGACAGCGCTCGACTTGGCGATTAAAAAGCAGAAGCCGGCGGTCGAAAT
CTTTTTGAGAGCCAACGGGACGGGGCGAAGCTGGTTCAACCCGGGGGGCT
GTCTGGAGTTCTTGAGGCACCCGCGGCTGTGCAAGGCGGTCTTCCAGACG
GGGGAAGGCGCGCAGGGCAAGCTCTGGCCGCTTCTGCTCAACGTCGGCTC
CATGAGCTTCGTCGGTGTGGTGATGTTTACGCGCTTCTTCAGCGAGGCGT
GGATGGAGCTGGGCCAGGACGCACTGCTGACGGCGGCTATCGTGAGCCAG
CTGGCCGTGTGGTTGCTGCTGCTCCTCATCTACTTTTCCGACCCCGGCTA
CATTCATGTCACCAAGGACTCCTCGCTCAGACAGGCGTACAATAAGCGGC
TGGAGATGCTGCTGAACCCGGAGGATGAGACGAGCGTCTCGCCGGTGCTA
AGCGAAGACCAGGCATCCCTGTGCTACACGTGCCAGCTTGAGCGCCCGCT
GCGCAGCAAGCACTGCCGCGTCTGCCGCCGCTGCGTCGGCTGCTTCGACC
ACCACTGTCCTTTCGTGGGCAACTGCGTGGGCAAGTCGAACTACCGATGG
TTCTTCATGTACATCGTCATGTTCGTCGTCGGGTCAGCCAGCTGGTGGTC
GATG
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