mRNA_P-wetherbeei_contig1050.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1050.1.1
Unique NamemRNA_P-wetherbeei_contig1050.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 250 bits (639), Expect = 1.350e-73
Identity = 175/505 (34.65%), Postives = 248/505 (49.11%), Query Frame = 1
Query:   10 ELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPG--VAGFEDCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFV-HGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLA---------GGCGVIVTLYV-----------------------------APVTPAEIATMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACC----TAVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCLVS---LAILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPLPVSGTRTLREKI 1380
            ELG  +   TW     PP   ++G  WVF I+R A  AI +YKARLVAQGFSQ PGVDY  T+APV    ++R L ALAA+F +E+HQ+DV  AYL   L+EE++   PPG    G E  +   L K +YGLKQA   W+  L A  ++ GF  +  D  VF  HG          N    +V + VDDL      V  ++  K++   +F M DLG++H LL              ++   Y+                             +P TP +   M    YRE +G+L++ A+ T PD+  AV  L++F  NP    W AA+ V++YLKG ++         A  ++  + A   +   +    S   +VFL+ G A+SW SK Q  +A S+  AEYVA T+A +  +W R     ++S       L+ DN+S + LA       R KHI I+FH +R+ V  G + +V     D  AD+L KPL    TR   EK+
Sbjct:   52 ELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKV-CHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGP---------NGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSLMYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGDNANGMEGFSDADWGS---SDHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPL----TRPKMEKM 539          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: H3H4L3_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4L3_PHYRM)

HSP 1 Score: 261 bits (666), Expect = 1.740e-73
Identity = 168/509 (33.01%), Postives = 263/509 (51.67%), Query Frame = 1
Query:    4 DLELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPGVAGFED----CLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLL---------AGGCGVIVTLYVAPV-------------TPAEIA----------------TMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACC----TAVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLR----RLAHCLVSLAILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPLPVSGTRTLREKI 1380
            D E  +   N+TW     P  ++ IGCRWVF ++      + R+KARLVA+GFSQ+ G+DY+ T+APV    ++R +L+LAAK+  ++HQ+DV TA+L  VLDE++Y   P G    +     C   KL ++LYGLKQ+  +W+  +  ++++ GF   ++D CV++          R  +  + V ++VDDL+        +   K + SKRF M DLG++   L         +G   V  T ++  +             TP +                  TM   PYR  VGAL+++ V T PD+  AV  L++F ++P P  W+A + VL+YL+             +V +   + A     + + R+TS   + F+++G  ISWRSK Q  +A S+  AEY+A + ATQ  VWL+     L       A+ ++EDN+  +ALA       R KHIDI++H VRE+V  G + L  +   D LAD++ K +P +    LR K+
Sbjct:  676 DSECDSLLKNDTWDVVPLPKGRKAIGCRWVFRVKENQAGEVERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVC---KLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLK---------RDGQDMIFVALYVDDLVLASSSDELLESTKHALSKRFEMTDLGELEYFLGMEIKNDHGSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSAVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSREDSVGMCGYSDADWAGDIESRRSTSG--YAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEVVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAIPATQFSVLRSKL 1170          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A4T9WAI5_9FIRM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4T9WAI5_9FIRM)

HSP 1 Score: 251 bits (641), Expect = 1.810e-73
Identity = 158/496 (31.85%), Postives = 253/496 (51.01%), Query Frame = 1
Query:    4 DLELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPG-VAGFEDCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLA---------GGCGVIVTLYVAPV-------------TPAEIA----------------TMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACCTAVT----LQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCLVSLA------ILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPL 1344
            D E+ +   NETW     P  ++ IGCRWVF ++      I R+KARLVA+GFSQ+ G+DY+ T+APV    ++R LL+LAAK++  +HQ+DV TA+L  +LDE++Y   P G V G       +L ++LYGLKQ+  +W+  +  ++++ GF   ++D C+++          R N   + V ++VDDL+        + D K + S RF M D+GQ+   L          G   V  T +   +             TP +                  TM   PYR  VG L+++ V T PD+  AV  L++F ++P P  W+A + V +Y++G +        +    LQ  + A     +   ++ S   + F+L  A +SW SK Q  ++ ST  AEY+A + A Q   W+ RL   +++ A      +++ EDN+SC+ +     +  R KHIDIK+H +R++V  G + L   +    LAD++ K L
Sbjct:   89 DSEVESLRKNETWTLVPLPKGRKAIGCRWVFRVKENQSGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRVLLSLAAKYKLTVHQMDVKTAFLNGLLDEDIYMAQPDGYVDGDRPDYVCRLKRSLYGLKQSPRMWNKTIDEFMLKLGFKKCESDHCIYLK---------RDNHDMMFVALYVDDLVLASSSDRMLKDTKQALSDRFEMTDMGQLKYFLGMEIEQDVATGKVSVRQTKFAKDILEKFKMDESNPVKTPQDPGLKLTKAMCEGGCKHDETMANVPYRNAVGCLMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVFRYIRGTKTHGLVFQASSEDGLQGYSDADWAGDLADRKSASG--YTFMLMSAPVSWGSKKQSSVSLSTSEAEYIALSLAIQEGKWIHRLLCEILAAANETGPELMIREDNQSCIKMTKNPVNHGRAKHIDIKYHHIRDEVKRGEVKLQHCETSVMLADIMTKAL 573          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A2N9IMU9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IMU9_FAGSY)

HSP 1 Score: 257 bits (657), Expect = 3.820e-72
Identity = 160/468 (34.19%), Postives = 244/468 (52.14%), Query Frame = 1
Query:   10 ELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPGVAGFE----DCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLAGGCGVIVT-------------LYVAPVTPAEIATMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACCT-AVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCL-----VSLAILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPL 1344
            E+ + + N  W     PP ++ IG +WV  ++R A  +I RYKARLVA+G++QR G+DY  T++PV+   ++R +L++ AK   E+ Q+DV TA+L   LDEE+Y   P   AGFE    +    +L +++YGLKQ+   W+L     +   GF   + D CV++          R   S L++ ++VDD+L  G  + +I   K   S  F MKD+G+ + +L    GV +T             L   P    E   M   PY   +G+L++  + T PDI  AV  ++R+ SNP P  WRA + +L+YL+G    A C     L+L+  +            S   + F+L G A+SW SK Q C+A ST  +EYVA + A Q  VWLRR    L        A+LL+ D+ S +A A       + KHI++++H +R+ V+ G + L  I     +AD L KP+
Sbjct:  787 EMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQP---AGFEAKGHERKVCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLK---------RSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVL----GVKITRDRSKKLLRCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPI 1238          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A182G425_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G425_AEDAL)

HSP 1 Score: 246 bits (628), Expect = 4.100e-72
Identity = 174/503 (34.59%), Postives = 249/503 (49.50%), Query Frame = 1
Query:    1 LDLELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPGVAGFEDCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLAGGCGVIVTLYVA-------------------------PV-TPAEIATM---------PTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRK-----RACCTAVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCL---VSLAILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPLPVSGTRTLREKI 1380
            +D E+ + + N TW  C  P  ++ + C+WVF I+R     I RYKARLVA+GFSQR G DY  TYAPV   D +R +LA+A + R E+HQ+DV TA+L   L E++Y   P GV G +D +  +L +ALYGLKQA   W+      + + GF  ++ D C++V G           ES L + ++VDD+L  G  +  I   K   +  F M DLGQV + L    G+++   V                          PV TP E              T PYREL+G L +VA  + PD+  AV  L+++ S P    W   + +L+Y+KG        R       L   + A         R+ S G  V  + G  + W ++ Q+ +A S+  AE+VA   AT   +WLRRL   L   V  A+   EDN+SC+ +A       R+KH+DIK++ +RE V  G I +  +    QLADL+ K LP      LRE +
Sbjct:   36 VDEEMKSHQKNNTWTLCKLPEGRKAVSCKWVFRIKRGEDGGIDRYKARLVARGFSQRFGYDYTDTYAPVARLDTVRTVLAVANQERLEVHQMDVKTAFLNGKLREDIYMTLPEGVDGGKDVV-CRLNRALYGLKQASRAWNERFHELVTKLGFRRSENDRCLYVRGEG---------ESKLFLLLYVDDILIVGRNLMDIVKLKKRLAAEFEMSDLGQVGSFL----GMLIERDVQNRVLRITQRAYLENLLRRFGMEDCKPVATPMECRLKLKKCEEIERATQPYRELIGCLAYVAQSSRPDLCAAVNLLSQYQSCPTNEHWGYLKRILRYVKGTLDIGLEFRGGEHVEALVAYSDADWGNDENDRRSISGG--VLRVFGGTVMWLTRKQKTVALSSTEAEFVALCTATCEGIWLRRLLSDLNVNVEGAVTYFEDNQSCIRVAEEPKDSRRLKHVDIKYNFIRELVQGGQIEISYLPTEKQLADLMTKGLPAGAFGRLREAV 522          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A2N9E251_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9E251_FAGSY)

HSP 1 Score: 257 bits (657), Expect = 7.250e-72
Identity = 160/468 (34.19%), Postives = 244/468 (52.14%), Query Frame = 1
Query:   10 ELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPGVAGFE----DCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLAGGCGVIVT-------------LYVAPVTPAEIATMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACCT-AVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCL-----VSLAILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPL 1344
            E+ + + N  W     PP ++ IG +WV  ++R A  +I RYKARLVA+G++QR G+DY  T++PV+   ++R +L++ AK   E+ Q+DV TA+L   LDEE+Y   P   AGFE    +    +L +++YGLKQ+   W+L     +   GF   + D CV++          R   S L++ ++VDD+L  G  + +I   K   S  F MKD+G+ + +L    GV +T             L   P    E   M   PY   +G+L++  + T PDI  AV  ++R+ SNP P  WRA + +L+YL+G    A C     L+L+  +            S   + F+L G A+SW SK Q C+A ST  +EYVA + A Q  VWLRR    L        A+LL+ D+ S +A A       + KHI++++H +R+ V+ G + L  I     +AD L KP+
Sbjct: 2383 EMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQP---AGFEAKGHERKVCRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLK---------RSKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVL----GVKITRDRSKKLLRCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKDPKYHGKAKHIELRYHYIRDMVSQGEVILQHISTGSMVADPLTKPI 2834          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A5D3DF53_CUCME (Putative copia-type polyprotein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DF53_CUCME)

HSP 1 Score: 243 bits (620), Expect = 2.690e-71
Identity = 166/494 (33.60%), Postives = 252/494 (51.01%), Query Frame = 1
Query:    1 LDLELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPG--VAGFEDCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLA-------GGCGVIVTLYVAPV-------------TPAEIAT----------MPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRAC--CTAVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCLVSLA---ILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPLPVSGTRTLR 1371
            +D E+ A + N+TW   T P  K+ +G +WVF I+R     + RYKARLVA+G+SQR G+DY+  +APV   + +R L+ALAA+  ++I Q+DV +A+L   L+EE+Y   PPG  V G ED + LKL KALYGLKQA  +W+  +  + ++ G+       C + H   ++     G+   LVV ++VDDL+ TG   S   D K + ++ F M D+G +   L         G  +    Y   +             TP E  T          +  + ++ LVG+L ++   T PDI  +V  ++RF  +P     + A+ +L+YL+G         ++   +L           T    S   +VF +   A +W SK Q  +  STC AEYVAA     H VWLR L   +  L     ++H DN+S +ALA       R KHID +FH +R+ ++   + +  +K  DQ+AD+L KPL V+    LR
Sbjct:    1 MDEEIKAIKKNDTWELSTLPNGKKAVGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFAPVARLETIRLLIALAAQNNWKIFQMDVKSAFLNGYLEEEVYLEQPPGYSVKGQEDKV-LKLKKALYGLKQAPRMWNSRINKYFLDNGYLR-----CPYEH---SLYIKVNGHGDILVVCLYVDDLIFTGNCASMFEDLKKAMTQEFEMTDIGLMSYYLGIEVKQSEEGISISQERYTREILEKFNMMNSKPVATPIETGTKLSKHEKGDDVDPSYFKSLVGSLRYLTC-TRPDILFSVGLVSRFMESPTTTHLKVAKRILRYLRGTLDYGLFYSSSKEFKLEGYCDSDWAGDTNYRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQEDPTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRDCISRKEVQVEYVKTEDQIADILTKPLKVNVFNNLR 484          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A060SJW2_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJW2_PYCCI)

HSP 1 Score: 246 bits (629), Expect = 4.710e-71
Identity = 179/493 (36.31%), Postives = 255/493 (51.72%), Query Frame = 1
Query:   58 PPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPGVAGFEDCLG--LKLLKALYGLKQAVYLWHLCLWAWLIEEG-FHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLA---GGCGVIVTLY----------------VAPV-TP-------------AEIATMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQ-------------RKRACCTAVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCLVSL---AILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPLPVSGTRTLREKI 1380
            PP +  IGCRWV+ ++  +   I  YKARLVAQGFSQ PG+DY  T+APV+  D++R L+A+AA+   ++ Q DVV AYL A LDE ++   PPG   ++D  G  L+L KALYGLKQ    W+  L   L+EE  F   D+D CV+V  T              +VG+HVDD+++      ++ + +A   K F + DLG+ H LL       G  +TL                  APV TP             A+++ M   PY+  +G L++ A+ T PDI  AV+ L++F S P P  W A + V +YLKG              R RA    + L+  + A      P  R + +G + FL+    I+W SK Q  +A S+  AEY+A +YA +H +W+R L   L  +   A  L+ DN+S +AL+       R KHIDI  H +RE + S TIAL  +   D +ADL  K L      TLR+++
Sbjct:  169 PPDRSPIGCRWVYRLKCDSDGRIICYKARLVAQGFSQVPGLDYFETFAPVVRMDSLRMLVAIAAERGMKLRQHDVVGAYLNADLDEVIFMHQPPG---YDDGSGRVLQLQKALYGLKQGGRKWNQHLNQILVEELLFRRLDSDMCVYVKVT---------KRGLTLVGVHVDDMISAADAEESLAELEAGLQKHFKITDLGEPHLLLGLEVSHDGHSITLRQTQFILSALKRYGMENCAPVSTPMDPNVRLLKEPDDADLSEMKDVPYQAAIGTLMYAALGTRPDISYAVQTLSQFSSRPGPAHWTALKRVFRYLKGTLDYGITYGRKGEPRARAYYQNLRLEGYSDADWGA-NPIDRKSISG-YAFLIGSGVIAWSSKKQAVVALSSTEAEYMAISYAARHAIWMRTLLAELTFVQEQATKLNADNQSAIALSKDNIHHARTKHIDICHHFIRECIESDTIALAYVPTDDNVADLFTKALAREHFHTLRKQL 647          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: UPI001028384D (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Enterobacteriaceae TaxID=543 RepID=UPI001028384D)

HSP 1 Score: 242 bits (617), Expect = 4.750e-71
Identity = 158/496 (31.85%), Postives = 253/496 (51.01%), Query Frame = 1
Query:   37 TWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPGVA--GFEDCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLA------------------------------GGCGVIVTL--YV------APVTPAEIATMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACCTA---VTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCLVSLAI-----LLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPLPVSGTRTLREKI 1380
            TW     P  K+ + C+WV+  +  A D+ P+YKARLVA+GF Q  G+D++  ++PV+    +R  LAL A     +HQ+DV TA+L   LD E+Y   P G    G ED +  +LLK+LYGLKQ+   W+     +++ +G+  ++ D C++             + S+L++ ++VDD+L  G  +  I+  K+  +K F MKD+G+  ++L                                G  + V L  YV       PV+  E A M   PY   VG+L++  + T PDI  AV  ++R+ SNP    W A + +L+YLK  +    C     ++++    +     +   R+TS   +VF L+G A+SWRS+LQ+C+  ST  AEYVAA+ A + ++WL RL      L I     +L+ D++S + LA       + KH+D+K+H +RE +    + LV +   +  ADLL K LP       R+++
Sbjct:    1 TWKLVKLPQGKKALPCKWVYRYKITAHDSQPKYKARLVAKGFKQEQGIDFDEVFSPVVKMTTLRCFLALVAILDLVLHQMDVKTAFLHGDLDVEIYMQQPEGFVEKGKEDWV-CQLLKSLYGLKQSPRAWYHKFHKFMLSQGYKRSEFDHCLYTKKAK--------DGSWLILILYVDDMLIAGKHLEEISALKSKMAKSFDMKDMGEASHILGMRIERDRSKKLIWLSQTEYIDKVLQRFNMEKGKALSVPLPPYVKLSKQDCPVSEEEQAEMDKIPYASAVGSLMYAMIATRPDIAFAVGVVSRYMSNPGKKHWEAVKGILRYLKATKSMRICYGSQELSVKGFTDSDYAGDLDNRRSTSG--YVFTLAGGAVSWRSRLQDCVTQSTTEAEYVAASEACKESIWLNRLV---TDLGIKEEMPVLYCDSQSAIQLARNPVYHSKTKHVDVKYHFIREMLEDKQLQLVKVHTTENPADLLTKGLPSESFAHFRKQL 482          
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Match: A0A2N9H4X0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H4X0_FAGSY)

HSP 1 Score: 252 bits (644), Expect = 8.080e-71
Identity = 154/453 (34.00%), Postives = 239/453 (52.76%), Query Frame = 1
Query:   10 ELGARELNETWAKCTSPPPKRLIGCRWVFAIQRAAIDAIPRYKARLVAQGFSQRPGVDYNVTYAPVMTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPG--VAGFEDCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTATMAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQVHNLLAGGCGVIVTLYVAPVTPAEIATMPTTPYRELVGALLFVAVMTCPDIFNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACCT-AVTLQLSAAARLVT*MPTGRATSNGEHVFLLSGAAISWRSKLQECMAASTCAAEYVAATYATQHTVWLRRLAHCL-----VSLAILLHEDNRSCVALANIVFSEHRVKHIDIKFHVVREQVASGTIALVPIKAMDQLADLLKKPL 1344
            E+ + + N  W     PP ++ IG + V  ++R A  +I RYKARLVA+ + QR G+DY  T++PV+   ++R +L++ AK   E+ Q+DV TA+L   LDEE+Y   P G  V G E  +  +L +++YGLKQ+   W+L     +   GF   + D CV++          R   S L++ ++VDD+L  G  + +I   K   S  F MKD+G+ + +L      +++L   P    E   M   PY   +G+L++  + T PDI  AV  ++R+ SNP P  WRA + +L+YL+G    A C     L+L+  +            S   + F+L G A+SW SK Q C+A ST  +EYVA + A Q  VWLRR    L        A+LL+ D+ S +A A       + KHI++++H +R+ V+   + L  I     +AD L KP+
Sbjct:  611 EMSSMDKNNVWELVDLPPGRKTIGNKCVLKVKRKADGSIDRYKARLVAKCYIQREGIDYEDTFSPVVRFASIRLILSIVAKHDLELFQMDVKTAFLNGELDEEIYMAQPAGFEVKGHERKV-CRLKRSIYGLKQSSRQWYLRFHDSITSFGFEMIEEDHCVYLK---------RSKRSILILSLYVDDILLVGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGDA---LLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVSMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGRDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQEAVWLRRFLQRLGVTAHAEDAVLLYSDSTSALAYAKGPKYHGKAKHIELRYHYIRDMVSQREVILQHISTSSMVADPLTKPI 1050          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1050.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZVS1_9AGAM1.350e-7334.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H4L3_PHYRM1.740e-7333.01Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A4T9WAI5_9FIRM1.810e-7331.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IMU9_FAGSY3.820e-7234.19Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A182G425_AEDAL4.100e-7234.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9E251_FAGSY7.250e-7234.19Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A5D3DF53_CUCME2.690e-7133.60Putative copia-type polyprotein n=2 Tax=Cucumis me... [more]
A0A060SJW2_PYCCI4.710e-7136.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001028384D4.750e-7131.85Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A2N9H4X0_FAGSY8.080e-7134.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1050contigP-wetherbeei_contig1050:2644..4188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6334.EFV57947
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1380
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.55e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria
DescriptionEncoded by
Cds size762
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.6272-UTR-P-wetherbeei_contig1050:2643..28501683185872.6272-UTR-P-wetherbeei_contig1050:2643..2850Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1050 2644..2850 +
1683185872.658555-UTR-P-wetherbeei_contig1050:3718..38991683185872.658555-UTR-P-wetherbeei_contig1050:3718..3899Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1050 3719..3899 +
1683185872.6681898-UTR-P-wetherbeei_contig1050:3958..41881683185872.6681898-UTR-P-wetherbeei_contig1050:3958..4188Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1050 3959..4188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185872.639726-CDS-P-wetherbeei_contig1050:2850..33161683185872.639726-CDS-P-wetherbeei_contig1050:2850..3316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1050 2851..3316 +
1683185872.648895-CDS-P-wetherbeei_contig1050:3422..37181683185872.648895-CDS-P-wetherbeei_contig1050:3422..3718Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1050 3423..3718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1050.1.1prot_P-wetherbeei_contig1050.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1050 2851..3718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1050.1.1

>prot_P-wetherbeei_contig1050.1.1 ID=prot_P-wetherbeei_contig1050.1.1|Name=mRNA_P-wetherbeei_contig1050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=254bp
MTADAMRFLLALAAKFRFEIHQLDVVTAYLKAVLDEELYTCAPPGVAGFE
DCLGLKLLKALYGLKQAVYLWHLCLWAWLIEEGFHSNDADCCVFVHGTAT
MAAAARGNESYLVVGIHVDDLLTTGYPVSAITDFKASASKRFHMKDLGQV
HNLLAGGCGVIVTLYVAPVTPAEIATMPTTPYRELVGALLFVAVMTCPDI
FNAVRGLTRFCSNPWPWLWRAAQHVLKYLKGQRKRACCTAVTLQLSAAAR
LVT*
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mRNA from alignment at P-wetherbeei_contig1050:2644..4188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1050.1.1 ID=mRNA_P-wetherbeei_contig1050.1.1|Name=mRNA_P-wetherbeei_contig1050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1545bp|location=Sequence derived from alignment at P-wetherbeei_contig1050:2644..4188+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGACTTGGAGCTGGGTGCCCGTGAGCTCAACGAGACGTGGGCCAAATG CACATCCCCACCACCGAAGCGTTTGATCGGCTGTCGCTGGGTCTTTGCAA TTCAGCGAGCGGCTATCGACGCCATTCCGCGGTACAAGGCGCGCTTGGTT GCCCAAGGGTTTTCCCAGCGCCCTGGCGTCGATTACAATGTTACATATGC TCCTGTCATGACGGCGGATGCCATGCGTTTCCTCTTGGCGTTAGCGGCGA AGTTTCGCTTCGAGATTCACCAGCTCGATGTCGTGACCGCCTATCTGAAG GCAGTCTTGGACGAGGAGCTCTACACATGTGCGCCACCCGGAGTCGCCGG GTTTGAGGACTGTCTGGGGTTGAAACTGCTGAAGGCCCTCTACGGGCTAA AGCAGGCCGTATATTTATGGCATCTCTGCCTTTGGGCGTGGCTTATCGAG GAGGGCTTCCATTCGAATGACGCTGACTGCTGCGTTTTCGTGCACGGGAC GGCAACAATGGCGGCAGCTGCTAGGGGCAACGAAAGCTACCTTGTTGTCG GCATCCACGTCGACGACCTGCTCACCACGGGGTACCCGGTGTCAGCCATC ACCGATTTCAAGGCGTCCGCCTCGAAACGCTTTCATATGAAGGACCTCGG CCAAGTGCACAACCTGCTCGCCGGTGATCGAGCAGGTCGGCGGCACGGTG CATCTCTCGCAGCAACATTGCATCGATGAGCTACTGGACCGCTTCCGAAT GCAGGAGGCGTGTCCGGTCTTGATGTCAGGGGGATGTGGCGTCATTGTGA CGCTGTATGTGGCGCCTGTGACGCCGGCTGAGATTGCTACTATGCCCACC ACGCCTTACCGGGAGCTGGTCGGGGCGCTACTCTTCGTCGCCGTAATGAC GTGCCCCGATATCTTCAACGCCGTCCGCGGTCTGACGCGTTTTTGCAGCA ACCCATGGCCTTGGCTTTGGCGTGCCGCTCAGCACGTCCTGAAGTACTTA AAGGGACAAAGGAAAAGGGCCTGTTGTACCGCCGTGACGCTCCAGCTATC AGCGGCGGCGCGGCTGGTTACGTAGATGCCGACTGGGCGCGCAACTTCAA ACGGGGAGCACGTTTTCCTGCTGTCCGGCGCTGCCATCTCCTGGCGCTCC AAGCTGCAGGAGTGCATGGCCGCTTCGACCTGTGCGGCCGAGTACGTAGC GGCGACCTACGCGACGCAGCACACGGTATGGCTGCGACGCTTGGCGCACT GTTTGGGTTTAGGGTTTTAGGGGTTAGGGTTTTAACCCCCAATCCTAACT CTTACCTACTGGAAGTGTCACTGGCCATTCTGCTCCACGAGGACAACCGG AGCTGTGTCGCTTTGGCGAACATCGTCTTCAGCGAGCATCGCGTCAAGCA CATCGACATCAAATTCCACGTCGTGCGGGAGCAGGTGGCGAGCGGCACGA TCGCTCTCGTTCCTATCAAGGCGATGGACCAGCTGGCGGACTTGCTTAAA AAGCCGCTTCCGGTTTCCGGTACTCGTACTTTACGGGAAAAGATA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1050:2644..4188+

>mRNA_P-wetherbeei_contig1050.1.1 ID=mRNA_P-wetherbeei_contig1050.1.1|Name=mRNA_P-wetherbeei_contig1050.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=762bp|location=Sequence derived from alignment at P-wetherbeei_contig1050:2644..4188+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGCGGATGCCATGCGTTTCCTCTTGGCGTTAGCGGCGAAGTTTCG
CTTCGAGATTCACCAGCTCGATGTCGTGACCGCCTATCTGAAGGCAGTCT
TGGACGAGGAGCTCTACACATGTGCGCCACCCGGAGTCGCCGGGTTTGAG
GACTGTCTGGGGTTGAAACTGCTGAAGGCCCTCTACGGGCTAAAGCAGGC
CGTATATTTATGGCATCTCTGCCTTTGGGCGTGGCTTATCGAGGAGGGCT
TCCATTCGAATGACGCTGACTGCTGCGTTTTCGTGCACGGGACGGCAACA
ATGGCGGCAGCTGCTAGGGGCAACGAAAGCTACCTTGTTGTCGGCATCCA
CGTCGACGACCTGCTCACCACGGGGTACCCGGTGTCAGCCATCACCGATT
TCAAGGCGTCCGCCTCGAAACGCTTTCATATGAAGGACCTCGGCCAAGTG
CACAACCTGCTCGCCGGGGGATGTGGCGTCATTGTGACGCTGTATGTGGC
GCCTGTGACGCCGGCTGAGATTGCTACTATGCCCACCACGCCTTACCGGG
AGCTGGTCGGGGCGCTACTCTTCGTCGCCGTAATGACGTGCCCCGATATC
TTCAACGCCGTCCGCGGTCTGACGCGTTTTTGCAGCAACCCATGGCCTTG
GCTTTGGCGTGCCGCTCAGCACGTCCTGAAGTACTTAAAGGGACAAAGGA
AAAGGGCCTGTTGTACCGCCGTGACGCTCCAGCTATCAGCGGCGGCGCGG
CTGGTTACGTAG
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