mRNA_P-wetherbeei_contig10493.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10493.1.1
Unique NamemRNA_P-wetherbeei_contig10493.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10493.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10493contigP-wetherbeei_contig10493:677..2335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra80555
Model size1398
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.31e-23
EggNOG OGs2BFKV@1|root,2S17B@2759|Eukaryota,3Q8B2@4776|Peronosporales
Cds size1398
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.9426458-CDS-P-wetherbeei_contig10493:676..16991683185871.9426458-CDS-P-wetherbeei_contig10493:676..1699Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10493 677..1699 -
1683185871.9522316-CDS-P-wetherbeei_contig10493:1960..23351683185871.9522316-CDS-P-wetherbeei_contig10493:1960..2335Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10493 1961..2335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10493.1.1prot_P-wetherbeei_contig10493.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10493 677..2335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10493.1.1

>prot_P-wetherbeei_contig10493.1.1 ID=prot_P-wetherbeei_contig10493.1.1|Name=mRNA_P-wetherbeei_contig10493.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=466bp
ARRPPGLAGLWEVSLALVYTVPVVALFNYTSYTTEKHQRERFVLRSVLRD
EHRHHVSLAVVRPRSPENGGGGDGGGSGSGGGSGAARAAGRHARARAGAV
GRGRLLLGLTPWAALALGRRIYLEWDWELLVRVLFADKMATHIAFTHFVG
AGLFLMIATRKVRFFFAVPAIGATLLSVAAQAPLSPHTLQLSLTGVGHGM
LALTAVFALGAVGWIVAGWQELVSFVRRTCFLHPVEAEESMRHYPVLRRL
ITAAANGGDCEAAAAAAAVAATAALGAGGGGARQAKSALALASPPGFRGA
RASRRGTAALSRPPSAGGVATMATVDVAPGVTVQEGDATCLSENDNVGPP
IEACNAAAAAAAAPTVLHLKGRGSCGFCGGTAPAYLVPVCRRWGLWALWR
RELDDAVGRARAQRAPGGEEAVLAAARAGLAAPCTTYADLAEARAVLERR
LAEAAAERAGLERRLA
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mRNA from alignment at P-wetherbeei_contig10493:677..2335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10493.1.1 ID=mRNA_P-wetherbeei_contig10493.1.1|Name=mRNA_P-wetherbeei_contig10493.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1659bp|location=Sequence derived from alignment at P-wetherbeei_contig10493:677..2335- (Phaeothamnion wetherbeei SAG_119_79)
GCCCGGCGCCCCCCCGGACTCGCCGGTCTCTGGGAGGTCTCACTGGCGCT
CGTCTACACCGTGCCGGTCGTGGCGCTCTTCAACTACACGAGCTACACGA
CGGAGAAACACCAGCGGGAGCGCTTCGTGCTGCGATCAGTCCTGCGGGAC
GAGCACCGCCATCACGTCTCCCTCGCCGTCGTGCGCCCGCGGAGCCCCGA
AAATGGCGGCGGCGGCGACGGTGGTGGCAGCGGAAGCGGCGGCGGCAGCG
GCGCGGCAAGGGCGGCTGGACGGCATGCGCGGGCCCGTGCCGGCGCGGTG
GGCCGCGGACGGCTGCTGCTGGGGTTGACGCCGTGGGCGGCGCTGGCACT
TGGGAGAAGGATCTACCTGGAATGGGTGAGTTTTTTTGGCGTTATTGCGT
TTTAGCTGGGAGAGGTGCGTTTTTGCCACCCCCGCCGCTCTAAGCGGTTG
CTTTGGAAGGGCTTGGTACTGGCCTTTTATCCAGGTTTTTCTCGCGAAAT
AGTCTACAAAAGGAAACGATAAGAGCTTCTGGAATTGCGGTAGCAACTTT
AAAATTCTCTCCCCCCCCCCCGGTTTGAAATTTCGTCCTTCTCTCACTCT
CATTTGCCCTGTATTCGAACCGTCGTGGTCTTGCAGGACTGGGAGCTTCT
CGTGCGGGTGCTGTTTGCCGACAAGATGGCGACACACATTGCGTTCACGC
ACTTCGTCGGCGCCGGCCTCTTCCTGATGATAGCCACCCGCAAGGTGCGC
TTCTTCTTTGCGGTGCCCGCTATCGGCGCCACGCTGCTGTCGGTGGCGGC
CCAGGCCCCGCTCTCCCCGCACACGCTGCAGCTGTCGCTAACCGGCGTCG
GTCATGGCATGCTGGCGCTGACCGCCGTCTTCGCTCTCGGCGCCGTCGGC
TGGATCGTCGCCGGCTGGCAGGAGCTCGTGTCGTTTGTCCGCCGGACGTG
CTTTTTGCACCCAGTGGAAGCAGAGGAGTCGATGCGGCACTACCCGGTTC
TCCGGCGTCTCATCACGGCAGCCGCCAACGGTGGTGACTGCGAGGCGGCG
GCCGCGGCGGCGGCGGTGGCAGCGACGGCAGCTCTGGGGGCTGGAGGCGG
CGGGGCGCGGCAGGCGAAGTCGGCATTGGCATTGGCGTCGCCGCCAGGTT
TTAGAGGGGCGCGGGCGAGTCGGCGCGGGACAGCAGCGCTGTCCCGTCCT
CCTTCCGCTGGAGGAGTGGCCACGATGGCGACGGTCGATGTGGCGCCCGG
CGTCACCGTGCAGGAGGGCGATGCCACGTGTTTATCAGAGAATGATAATG
TGGGGCCACCTATCGAGGCCTGCAACGCCGCGGCGGCGGCGGCGGCGGCG
CCGACCGTGCTCCACCTGAAGGGGCGCGGCTCGTGCGGCTTTTGCGGCGG
CACCGCCCCAGCCTATCTGGTCCCCGTCTGCCGCCGCTGGGGCCTCTGGG
CACTCTGGCGGCGTGAGCTGGATGACGCAGTCGGCCGCGCCCGCGCGCAG
CGCGCGCCCGGCGGCGAGGAAGCTGTTCTGGCGGCGGCACGTGCGGGGCT
GGCGGCGCCGTGCACCACCTACGCAGACCTGGCGGAAGCGCGGGCGGTGC
TCGAACGGCGACTGGCGGAGGCGGCGGCGGAGCGGGCGGGGCTCGAGCGG
CGGCTGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10493:677..2335-

>mRNA_P-wetherbeei_contig10493.1.1 ID=mRNA_P-wetherbeei_contig10493.1.1|Name=mRNA_P-wetherbeei_contig10493.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1398bp|location=Sequence derived from alignment at P-wetherbeei_contig10493:677..2335- (Phaeothamnion wetherbeei SAG_119_79)
GCCCGGCGCCCCCCCGGACTCGCCGGTCTCTGGGAGGTCTCACTGGCGCT
CGTCTACACCGTGCCGGTCGTGGCGCTCTTCAACTACACGAGCTACACGA
CGGAGAAACACCAGCGGGAGCGCTTCGTGCTGCGATCAGTCCTGCGGGAC
GAGCACCGCCATCACGTCTCCCTCGCCGTCGTGCGCCCGCGGAGCCCCGA
AAATGGCGGCGGCGGCGACGGTGGTGGCAGCGGAAGCGGCGGCGGCAGCG
GCGCGGCAAGGGCGGCTGGACGGCATGCGCGGGCCCGTGCCGGCGCGGTG
GGCCGCGGACGGCTGCTGCTGGGGTTGACGCCGTGGGCGGCGCTGGCACT
TGGGAGAAGGATCTACCTGGAATGGGACTGGGAGCTTCTCGTGCGGGTGC
TGTTTGCCGACAAGATGGCGACACACATTGCGTTCACGCACTTCGTCGGC
GCCGGCCTCTTCCTGATGATAGCCACCCGCAAGGTGCGCTTCTTCTTTGC
GGTGCCCGCTATCGGCGCCACGCTGCTGTCGGTGGCGGCCCAGGCCCCGC
TCTCCCCGCACACGCTGCAGCTGTCGCTAACCGGCGTCGGTCATGGCATG
CTGGCGCTGACCGCCGTCTTCGCTCTCGGCGCCGTCGGCTGGATCGTCGC
CGGCTGGCAGGAGCTCGTGTCGTTTGTCCGCCGGACGTGCTTTTTGCACC
CAGTGGAAGCAGAGGAGTCGATGCGGCACTACCCGGTTCTCCGGCGTCTC
ATCACGGCAGCCGCCAACGGTGGTGACTGCGAGGCGGCGGCCGCGGCGGC
GGCGGTGGCAGCGACGGCAGCTCTGGGGGCTGGAGGCGGCGGGGCGCGGC
AGGCGAAGTCGGCATTGGCATTGGCGTCGCCGCCAGGTTTTAGAGGGGCG
CGGGCGAGTCGGCGCGGGACAGCAGCGCTGTCCCGTCCTCCTTCCGCTGG
AGGAGTGGCCACGATGGCGACGGTCGATGTGGCGCCCGGCGTCACCGTGC
AGGAGGGCGATGCCACGTGTTTATCAGAGAATGATAATGTGGGGCCACCT
ATCGAGGCCTGCAACGCCGCGGCGGCGGCGGCGGCGGCGCCGACCGTGCT
CCACCTGAAGGGGCGCGGCTCGTGCGGCTTTTGCGGCGGCACCGCCCCAG
CCTATCTGGTCCCCGTCTGCCGCCGCTGGGGCCTCTGGGCACTCTGGCGG
CGTGAGCTGGATGACGCAGTCGGCCGCGCCCGCGCGCAGCGCGCGCCCGG
CGGCGAGGAAGCTGTTCTGGCGGCGGCACGTGCGGGGCTGGCGGCGCCGT
GCACCACCTACGCAGACCTGGCGGAAGCGCGGGCGGTGCTCGAACGGCGA
CTGGCGGAGGCGGCGGCGGAGCGGGCGGGGCTCGAGCGGCGGCTGGCG
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