mRNA_P-wetherbeei_contig10485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10485.1.1
Unique NamemRNA_P-wetherbeei_contig10485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A7C1WWR3_9GAMM (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C1WWR3_9GAMM)

HSP 1 Score: 193 bits (491), Expect = 1.400e-59
Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 1
Query:   13 DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546
            DP TW++ HGDALY YA++++R+P+ AED+VQET LAAL ARER+ G+++E+TWL+GILK+K++DH R+  REQ  D         E QFDHSGHW  P   W  P    EN E   V   CI  LP+R   L +LRE+ G+ + E+  LL IST  N+WVMLSRAR R+R C++  W
Sbjct:    6 DPSTWVAQHGDALYRYALMKMRDPSQAEDMVQETFLAALKARERFSGESSEKTWLIGILKHKIIDHFRKHKREQNSDDIEALREQLEQQFDHSGHWREPLSHWQAPEQAYENREFWQVFSACIAHLPERLADLFILREIKGLSSNEICKLLDISTTNNMWVMLSRARMRLRNCLDSHW 183          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A2A4WFX2_9GAMM (RNA polymerase subunit sigma n=2 Tax=root TaxID=1 RepID=A0A2A4WFX2_9GAMM)

HSP 1 Score: 192 bits (488), Expect = 4.000e-59
Identity = 91/183 (49.73%), Postives = 125/183 (68.31%), Query Frame = 1
Query:    1 MSSI-DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546
            M+S+ DP TW++ HGDAL+ YA++++R+ +LAED+VQET LAAL AR+R+ GQ++E+TWL+GILK+K++DH R+  REQ+ D           QFDH+GHW  P R W +P    EN E   V   CI  LP     L +LRE+ G+ + E+  LL IST  N+WVMLSRAR R+R C++ RW
Sbjct:    1 MNSVSDPATWVTQHGDALFRYALMKMRDKSLAEDMVQETFLAALKARQRFSGQSSEKTWLIGILKHKIIDHFRKHKREQSCDDIESLTEQLNQQFDHTGHWSIPMRSWQEPEQAHENQEFWKVFAACIAHLPDHLADLFILREVKGLTSEEICKLLDISTTNNMWVMLSRARMRLRGCLDSRW 183          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A7C1TFN0_9GAMM (RNA polymerase sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TFN0_9GAMM)

HSP 1 Score: 189 bits (480), Expect = 5.400e-58
Identity = 91/178 (51.12%), Postives = 123/178 (69.10%), Query Frame = 1
Query:   13 DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546
            DPDTWL  +G+ LY +A+LR+    LAE+LVQETLLAAL AR  + G+++E+TWLVGILK+K++DHLRRA REQT D  SE +      FD  G W      WSDP    E+ +LR VL +C+  LP+R   L +LRE+DG+ ++E+  +L+IST  NLWVMLSR R ++R C++  W
Sbjct:    9 DPDTWLDQYGNTLYRHALLRLNNSTLAEELVQETLLAALQARSGFAGKSSEKTWLVGILKHKIIDHLRRAAREQTVDCNSELEALLSESFDEHGRWKIDVSAWSDPDKALESEQLRKVLEKCLSGLPERLSHLFILREIDGLNSSEICKVLNISTTNNLWVMLSRMRMQLRQCLDTHW 186          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A1G0K3Y6_9GAMM (RNA polymerase sigma factor n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K3Y6_9GAMM)

HSP 1 Score: 188 bits (478), Expect = 1.020e-57
Identity = 97/182 (53.30%), Postives = 123/182 (67.58%), Query Frame = 1
Query:    1 MSSIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQ-FDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELR 543
            MSS DP  WL LHGDALY YA+ R R  A+AEDLVQ+TL+AA + R+ ++G++ ERTWL+GILK+K++D LRR GRE      ++  G  E   FD  GHW    R W+ P    E  E    L +C+  LP+R  +L +LRELDGMET ELL +L IS+A NLWVMLSRAR R+ AC+E R
Sbjct:    1 MSSRDPARWLELHGDALYAYALARTRNAAMAEDLVQDTLVAAFAGRDAFKGESAERTWLIGILKHKVIDCLRRQGREVPLADETDVSGDIETTLFDEPGHWQVDVRAWAQPERALEREEFWEALRDCLAALPERLGRLFMLRELDGMETDELLQVLGISSANNLWVMLSRARLRLSACLEAR 182          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A523NYP3_9PROT (RNA polymerase sigma factor n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NYP3_9PROT)

HSP 1 Score: 184 bits (466), Expect = 2.400e-55
Identity = 85/181 (46.96%), Postives = 125/181 (69.06%), Query Frame = 1
Query:    4 SSIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546
            +S  P+ WL  HGDALY YA+LRV   A AEDLVQETLLA +    ++ G +  RTWLV I+K+K+VD +R+  REQ  +  + D+  ++++FD SGHWL  P  W DPA   EN  L   + +CI +LP++ R L+V+RE+DG ++ +L+ +L++S+A NLWVMLSR R+++R+C+   W
Sbjct:   44 ASESPERWLDEHGDALYAYAMLRVHHSAAAEDLVQETLLAGIEGIAKFTGGSNTRTWLVSIMKHKIVDRVRKLHREQPLELDTVDEQAWQSRFDESGHWLVKPTDWGDPAATIENNALGTAIMQCIGQLPEKLRTLIVMREIDGFDSRDLIEILNLSSASNLWVMLSRGRDKLRSCLGKNW 224          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A3D5AX44_9GAMM (RNA polymerase sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5AX44_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 1.370e-54
Identity = 93/184 (50.54%), Postives = 122/184 (66.30%), Query Frame = 1
Query:   13 DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSG-HWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRWPGGTA 561
            DP+TWL  HGDALY +A++RVR+ A+AEDLVQ+TLLAAL A ER+ GQ++E TWL+ ILKNK+VDH RR  RE     + + DG  +A F  S  HWL+ P  W DP    EN++      +C++ LP RQ Q   L ELDG+ T EL  +L + T+ N+WV+L RAR R+R C+E  W G  A
Sbjct:   10 DPNTWLDQHGDALYRFALVRVRDSAVAEDLVQDTLLAALRAHERFAGQSSELTWLIAILKNKIVDHYRRHVREAPLPESEDPDGLIDALFKKSNDHWLTVPAAWQDPDTSLENSQFWQAFTDCLQGLPARQAQAFTLTELDGLGTDELCKVLGV-TSSNVWVLLHRARLRLRECLEHGWFGNEA 192          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: UPI0004884671 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Methylobacter luteus TaxID=415 RepID=UPI0004884671)

HSP 1 Score: 180 bits (457), Expect = 1.510e-54
Identity = 89/178 (50.00%), Postives = 118/178 (66.29%), Query Frame = 1
Query:   16 PDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSE-DDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546
            PD WL LHGD LY YA  RVR+  +AEDLVQETLLAAL A  RY G+A+ERTWL+GILK+K++DH R++ RE+  +   +  D      FD  G+W      WS P    E  +   +L  CI+RLP +  QL +LRELDG+E+ E+  L+SIST  N WV+LSR R ++R C++L+W
Sbjct:    8 PDQWLDLHGDILYRYAFARVRDSEMAEDLVQETLLAALKANARYAGEASERTWLIGILKHKIIDHFRKSSREKAQEFAGQFSDDENNDYFDQQGNWQVDLSSWSKPDTSLEQEQFLDILQHCIDRLPPKMAQLFMLRELDGIESEEICQLMSISTLNNFWVILSRTRLQLRHCLDLKW 185          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: V5DH35_9GAMM (RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methyloglobulus morosus KoM1 TaxID=1116472 RepID=V5DH35_9GAMM)

HSP 1 Score: 180 bits (456), Expect = 2.210e-54
Identity = 87/179 (48.60%), Postives = 125/179 (69.83%), Query Frame = 1
Query:   16 PDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHF--EAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546
            PD WL L+GDALY YA+ RVR+P LA DL+Q+TLLAAL A++ + GQA+E+TWL GILK+K++D  R++ RE+T D   ++   +  ++ FD  G W     VWS P    E  E  AVL  C+++LPQ+  Q+ +LRELDGME+ E+  +++IS+  N WVMLSRAR ++R C+++ W
Sbjct:    8 PDQWLELYGDALYRYAITRVRDPDLAADLLQDTLLAALKAKDNFMGQASEQTWLTGILKHKMIDFFRKSSREKT-DTMGDEVADYKNDSFFDEKGSWRVDLSVWSKPDKALEQEEFLAVLQRCVDKLPQKMSQVFILRELDGMESEEICDVMAISSLNNFWVMLSRARVQLRHCLDMNW 185          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A1E7I1X7_9DELT (Uncharacterized protein n=1 Tax=Desulfobacterales bacterium S5133MH16 TaxID=1869300 RepID=A0A1E7I1X7_9DELT)

HSP 1 Score: 180 bits (456), Expect = 5.420e-54
Identity = 92/185 (49.73%), Postives = 126/185 (68.11%), Query Frame = 1
Query:    7 SIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWS-DPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRWPGGT 558
            S+DP+ W+  +GDALY YA++RVR+P +AE++VQET LAAL AR+R+QG+++E+TWL+GILK+K++DH R+A R+Q        D   E  FD +G+W+  P  WS DP    E  E   V   C+ +LP R  Q+ VLRE+DG+ET E+  LL IS   NLWVML RAR ++R  +EL W G T
Sbjct:   14 SLDPENWVDQYGDALYKYALVRVRKPDVAEEMVQETFLAALYARKRFQGRSSEKTWLIGILKHKIIDHFRQASRKQPIKRRDSQDDSMEEIFDRNGNWIDGPIRWSFDPRKSLEQKEFFKVFHHCLLKLPPRLAQVFVLREIDGLETKEICDLLDISR-NNLWVMLYRARMKLRRHLELSWFGKT 197          
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: UPI0003803E6A (sigma-70 family RNA polymerase sigma factor n=1 Tax=Methylobacter TaxID=429 RepID=UPI0003803E6A)

HSP 1 Score: 178 bits (452), Expect = 8.650e-54
Identity = 92/180 (51.11%), Postives = 118/180 (65.56%), Query Frame = 1
Query:   16 PDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTY---DPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546
            PD WL LHGD LY YA  RVR P +AEDLVQETLL AL A   Y G+A+ERTWL+GILK+K++DH R+A RE+T    D  SED  +    FD  G W      WS P    E  +   +L  CI+RLP +  QL +LRELDGM + ++  ++SIST  N WV+LSRAR ++R C++L+W
Sbjct:    8 PDQWLDLHGDILYRYAFARVRVPEIAEDLVQETLLGALKANAGYAGEASERTWLIGILKHKIIDHFRKASREKTQGFADQFSEDANND--YFDRQGGWQIDLSSWSKPDVSLEQEQFIDILQHCIDRLPTKMAQLFMLRELDGMASEDICKMMSISTLNNFWVILSRARLQLRHCLDLKW 185          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1WWR3_9GAMM1.400e-5951.12Sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
A0A2A4WFX2_9GAMM4.000e-5949.73RNA polymerase subunit sigma n=2 Tax=root TaxID=1 ... [more]
A0A7C1TFN0_9GAMM5.400e-5851.12RNA polymerase sigma factor n=1 Tax=Gammaproteobac... [more]
A0A1G0K3Y6_9GAMM1.020e-5753.30RNA polymerase sigma factor n=1 Tax=Gammaproteobac... [more]
A0A523NYP3_9PROT2.400e-5546.96RNA polymerase sigma factor n=1 Tax=Proteobacteria... [more]
A0A3D5AX44_9GAMM1.370e-5450.54RNA polymerase sigma factor n=1 Tax=Gammaproteobac... [more]
UPI00048846711.510e-5450.00sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]
V5DH35_9GAMM2.210e-5448.60RNA polymerase, sigma-24 subunit, ECF subfamily n=... [more]
A0A1E7I1X7_9DELT5.420e-5449.73Uncharacterized protein n=1 Tax=Desulfobacterales ... [more]
UPI0003803E6A8.650e-5451.11sigma-70 family RNA polymerase sigma factor n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10485contigP-wetherbeei_contig10485:58..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1116472.MGMO_177c00220
PFAMsSigma70_r2,Sigma70_r4_2
Model size570
Max annot lvl135618|Methylococcales
KEGG koko:K03088
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.62e-55
EggNOG OGsCOG1595@1|root,COG1595@2|Bacteria,1RHKM@1224|Proteobacteria,1S48U@1236|Gammaproteobacteria,1XFI1@135618|Methylococcales
DescriptionRNA polymerase sigma factor 70, region 4 type 2
Cds size570
COG categoryK
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.547172-CDS-P-wetherbeei_contig10485:57..6271683185871.547172-CDS-P-wetherbeei_contig10485:57..627Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10485 58..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10485.1.1prot_P-wetherbeei_contig10485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10485 58..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10485.1.1

>prot_P-wetherbeei_contig10485.1.1 ID=prot_P-wetherbeei_contig10485.1.1|Name=mRNA_P-wetherbeei_contig10485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp
MSSIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQ
GQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHW
LSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAE
LLVLLSISTAGNLWVMLSRARERVRACVELRWPGGTAHA*
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mRNA from alignment at P-wetherbeei_contig10485:58..627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10485.1.1 ID=mRNA_P-wetherbeei_contig10485.1.1|Name=mRNA_P-wetherbeei_contig10485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig10485:58..627- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGCATCGATCCCGACACCTGGCTGAGTCTGCATGGCGATGCCCT GTACGGCTATGCCGTGCTGCGCGTGCGTGAGCCGGCGCTGGCCGAGGACC TGGTGCAGGAAACCTTGCTGGCGGCCCTGTCGGCGCGCGAGCGTTACCAG GGGCAGGCCACTGAACGCACCTGGCTGGTGGGCATACTCAAGAACAAGCT CGTCGATCACCTGCGTCGCGCGGGCCGCGAGCAGACCTATGACCCGACCA GCGAGGACGACGGTCACTTCGAGGCGCAATTCGATCATTCCGGTCATTGG CTGAGCCCACCGCGCGTGTGGAGTGACCCGGCCTTCGTCGCCGAGAACGC TGAGCTGCGCGCAGTCTTGTTCGAGTGCATAGAGCGCTTGCCGCAACGCC AGCGACAATTACTGGTATTGCGCGAGCTGGATGGCATGGAGACTGCGGAA TTGCTCGTGCTGCTGTCGATATCGACCGCGGGGAATTTATGGGTGATGTT GTCGCGGGCCCGCGAACGGGTGCGGGCCTGTGTGGAATTGCGCTGGCCGG GAGGGACCGCCCATGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10485:58..627-

>mRNA_P-wetherbeei_contig10485.1.1 ID=mRNA_P-wetherbeei_contig10485.1.1|Name=mRNA_P-wetherbeei_contig10485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig10485:58..627- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCAGCATCGATCCCGACACCTGGCTGAGTCTGCATGGCGATGCCCT
GTACGGCTATGCCGTGCTGCGCGTGCGTGAGCCGGCGCTGGCCGAGGACC
TGGTGCAGGAAACCTTGCTGGCGGCCCTGTCGGCGCGCGAGCGTTACCAG
GGGCAGGCCACTGAACGCACCTGGCTGGTGGGCATACTCAAGAACAAGCT
CGTCGATCACCTGCGTCGCGCGGGCCGCGAGCAGACCTATGACCCGACCA
GCGAGGACGACGGTCACTTCGAGGCGCAATTCGATCATTCCGGTCATTGG
CTGAGCCCACCGCGCGTGTGGAGTGACCCGGCCTTCGTCGCCGAGAACGC
TGAGCTGCGCGCAGTCTTGTTCGAGTGCATAGAGCGCTTGCCGCAACGCC
AGCGACAATTACTGGTATTGCGCGAGCTGGATGGCATGGAGACTGCGGAA
TTGCTCGTGCTGCTGTCGATATCGACCGCGGGGAATTTATGGGTGATGTT
GTCGCGGGCCCGCGAACGGGTGCGGGCCTGTGTGGAATTGCGCTGGCCGG
GAGGGACCGCCCATGCTTGA
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