mRNA_P-wetherbeei_contig10485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A7C1WWR3_9GAMM (Sigma-70 family RNA polymerase sigma factor n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C1WWR3_9GAMM) HSP 1 Score: 193 bits (491), Expect = 1.400e-59 Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 1 Query: 13 DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546 DP TW++ HGDALY YA++++R+P+ AED+VQET LAAL ARER+ G+++E+TWL+GILK+K++DH R+ REQ D E QFDHSGHW P W P EN E V CI LP+R L +LRE+ G+ + E+ LL IST N+WVMLSRAR R+R C++ W Sbjct: 6 DPSTWVAQHGDALYRYALMKMRDPSQAEDMVQETFLAALKARERFSGESSEKTWLIGILKHKIIDHFRKHKREQNSDDIEALREQLEQQFDHSGHWREPLSHWQAPEQAYENREFWQVFSACIAHLPERLADLFILREIKGLSSNEICKLLDISTTNNMWVMLSRARMRLRNCLDSHW 183
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A2A4WFX2_9GAMM (RNA polymerase subunit sigma n=2 Tax=root TaxID=1 RepID=A0A2A4WFX2_9GAMM) HSP 1 Score: 192 bits (488), Expect = 4.000e-59 Identity = 91/183 (49.73%), Postives = 125/183 (68.31%), Query Frame = 1 Query: 1 MSSI-DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546 M+S+ DP TW++ HGDAL+ YA++++R+ +LAED+VQET LAAL AR+R+ GQ++E+TWL+GILK+K++DH R+ REQ+ D QFDH+GHW P R W +P EN E V CI LP L +LRE+ G+ + E+ LL IST N+WVMLSRAR R+R C++ RW Sbjct: 1 MNSVSDPATWVTQHGDALFRYALMKMRDKSLAEDMVQETFLAALKARQRFSGQSSEKTWLIGILKHKIIDHFRKHKREQSCDDIESLTEQLNQQFDHTGHWSIPMRSWQEPEQAHENQEFWKVFAACIAHLPDHLADLFILREVKGLTSEEICKLLDISTTNNMWVMLSRARMRLRGCLDSRW 183
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A7C1TFN0_9GAMM (RNA polymerase sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TFN0_9GAMM) HSP 1 Score: 189 bits (480), Expect = 5.400e-58 Identity = 91/178 (51.12%), Postives = 123/178 (69.10%), Query Frame = 1 Query: 13 DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546 DPDTWL +G+ LY +A+LR+ LAE+LVQETLLAAL AR + G+++E+TWLVGILK+K++DHLRRA REQT D SE + FD G W WSDP E+ +LR VL +C+ LP+R L +LRE+DG+ ++E+ +L+IST NLWVMLSR R ++R C++ W Sbjct: 9 DPDTWLDQYGNTLYRHALLRLNNSTLAEELVQETLLAALQARSGFAGKSSEKTWLVGILKHKIIDHLRRAAREQTVDCNSELEALLSESFDEHGRWKIDVSAWSDPDKALESEQLRKVLEKCLSGLPERLSHLFILREIDGLNSSEICKVLNISTTNNLWVMLSRMRMQLRQCLDTHW 186
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A1G0K3Y6_9GAMM (RNA polymerase sigma factor n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K3Y6_9GAMM) HSP 1 Score: 188 bits (478), Expect = 1.020e-57 Identity = 97/182 (53.30%), Postives = 123/182 (67.58%), Query Frame = 1 Query: 1 MSSIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQ-FDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELR 543 MSS DP WL LHGDALY YA+ R R A+AEDLVQ+TL+AA + R+ ++G++ ERTWL+GILK+K++D LRR GRE ++ G E FD GHW R W+ P E E L +C+ LP+R +L +LRELDGMET ELL +L IS+A NLWVMLSRAR R+ AC+E R Sbjct: 1 MSSRDPARWLELHGDALYAYALARTRNAAMAEDLVQDTLVAAFAGRDAFKGESAERTWLIGILKHKVIDCLRRQGREVPLADETDVSGDIETTLFDEPGHWQVDVRAWAQPERALEREEFWEALRDCLAALPERLGRLFMLRELDGMETDELLQVLGISSANNLWVMLSRARLRLSACLEAR 182
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A523NYP3_9PROT (RNA polymerase sigma factor n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NYP3_9PROT) HSP 1 Score: 184 bits (466), Expect = 2.400e-55 Identity = 85/181 (46.96%), Postives = 125/181 (69.06%), Query Frame = 1 Query: 4 SSIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546 +S P+ WL HGDALY YA+LRV A AEDLVQETLLA + ++ G + RTWLV I+K+K+VD +R+ REQ + + D+ ++++FD SGHWL P W DPA EN L + +CI +LP++ R L+V+RE+DG ++ +L+ +L++S+A NLWVMLSR R+++R+C+ W Sbjct: 44 ASESPERWLDEHGDALYAYAMLRVHHSAAAEDLVQETLLAGIEGIAKFTGGSNTRTWLVSIMKHKIVDRVRKLHREQPLELDTVDEQAWQSRFDESGHWLVKPTDWGDPAATIENNALGTAIMQCIGQLPEKLRTLIVMREIDGFDSRDLIEILNLSSASNLWVMLSRGRDKLRSCLGKNW 224
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A3D5AX44_9GAMM (RNA polymerase sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5AX44_9GAMM) HSP 1 Score: 181 bits (458), Expect = 1.370e-54 Identity = 93/184 (50.54%), Postives = 122/184 (66.30%), Query Frame = 1 Query: 13 DPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSG-HWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRWPGGTA 561 DP+TWL HGDALY +A++RVR+ A+AEDLVQ+TLLAAL A ER+ GQ++E TWL+ ILKNK+VDH RR RE + + DG +A F S HWL+ P W DP EN++ +C++ LP RQ Q L ELDG+ T EL +L + T+ N+WV+L RAR R+R C+E W G A Sbjct: 10 DPNTWLDQHGDALYRFALVRVRDSAVAEDLVQDTLLAALRAHERFAGQSSELTWLIAILKNKIVDHYRRHVREAPLPESEDPDGLIDALFKKSNDHWLTVPAAWQDPDTSLENSQFWQAFTDCLQGLPARQAQAFTLTELDGLGTDELCKVLGV-TSSNVWVLLHRARLRLRECLEHGWFGNEA 192
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: UPI0004884671 (sigma-70 family RNA polymerase sigma factor n=1 Tax=Methylobacter luteus TaxID=415 RepID=UPI0004884671) HSP 1 Score: 180 bits (457), Expect = 1.510e-54 Identity = 89/178 (50.00%), Postives = 118/178 (66.29%), Query Frame = 1 Query: 16 PDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSE-DDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546 PD WL LHGD LY YA RVR+ +AEDLVQETLLAAL A RY G+A+ERTWL+GILK+K++DH R++ RE+ + + D FD G+W WS P E + +L CI+RLP + QL +LRELDG+E+ E+ L+SIST N WV+LSR R ++R C++L+W Sbjct: 8 PDQWLDLHGDILYRYAFARVRDSEMAEDLVQETLLAALKANARYAGEASERTWLIGILKHKIIDHFRKSSREKAQEFAGQFSDDENNDYFDQQGNWQVDLSSWSKPDTSLEQEQFLDILQHCIDRLPPKMAQLFMLRELDGIESEEICQLMSISTLNNFWVILSRTRLQLRHCLDLKW 185
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: V5DH35_9GAMM (RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Methyloglobulus morosus KoM1 TaxID=1116472 RepID=V5DH35_9GAMM) HSP 1 Score: 180 bits (456), Expect = 2.210e-54 Identity = 87/179 (48.60%), Postives = 125/179 (69.83%), Query Frame = 1 Query: 16 PDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHF--EAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546 PD WL L+GDALY YA+ RVR+P LA DL+Q+TLLAAL A++ + GQA+E+TWL GILK+K++D R++ RE+T D ++ + ++ FD G W VWS P E E AVL C+++LPQ+ Q+ +LRELDGME+ E+ +++IS+ N WVMLSRAR ++R C+++ W Sbjct: 8 PDQWLELYGDALYRYAITRVRDPDLAADLLQDTLLAALKAKDNFMGQASEQTWLTGILKHKMIDFFRKSSREKT-DTMGDEVADYKNDSFFDEKGSWRVDLSVWSKPDKALEQEEFLAVLQRCVDKLPQKMSQVFILRELDGMESEEICDVMAISSLNNFWVMLSRARVQLRHCLDMNW 185
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: A0A1E7I1X7_9DELT (Uncharacterized protein n=1 Tax=Desulfobacterales bacterium S5133MH16 TaxID=1869300 RepID=A0A1E7I1X7_9DELT) HSP 1 Score: 180 bits (456), Expect = 5.420e-54 Identity = 92/185 (49.73%), Postives = 126/185 (68.11%), Query Frame = 1 Query: 7 SIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTYDPTSEDDGHFEAQFDHSGHWLSPPRVWS-DPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRWPGGT 558 S+DP+ W+ +GDALY YA++RVR+P +AE++VQET LAAL AR+R+QG+++E+TWL+GILK+K++DH R+A R+Q D E FD +G+W+ P WS DP E E V C+ +LP R Q+ VLRE+DG+ET E+ LL IS NLWVML RAR ++R +EL W G T Sbjct: 14 SLDPENWVDQYGDALYKYALVRVRKPDVAEEMVQETFLAALYARKRFQGRSSEKTWLIGILKHKIIDHFRQASRKQPIKRRDSQDDSMEEIFDRNGNWIDGPIRWSFDPRKSLEQKEFFKVFHHCLLKLPPRLAQVFVLREIDGLETKEICDLLDISR-NNLWVMLYRARMKLRRHLELSWFGKT 197
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Match: UPI0003803E6A (sigma-70 family RNA polymerase sigma factor n=1 Tax=Methylobacter TaxID=429 RepID=UPI0003803E6A) HSP 1 Score: 178 bits (452), Expect = 8.650e-54 Identity = 92/180 (51.11%), Postives = 118/180 (65.56%), Query Frame = 1 Query: 16 PDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQGQATERTWLVGILKNKLVDHLRRAGREQTY---DPTSEDDGHFEAQFDHSGHWLSPPRVWSDPAFVAENAELRAVLFECIERLPQRQRQLLVLRELDGMETAELLVLLSISTAGNLWVMLSRARERVRACVELRW 546 PD WL LHGD LY YA RVR P +AEDLVQETLL AL A Y G+A+ERTWL+GILK+K++DH R+A RE+T D SED + FD G W WS P E + +L CI+RLP + QL +LRELDGM + ++ ++SIST N WV+LSRAR ++R C++L+W Sbjct: 8 PDQWLDLHGDILYRYAFARVRVPEIAEDLVQETLLGALKANAGYAGEASERTWLIGILKHKIIDHFRKASREKTQGFADQFSEDANND--YFDRQGGWQIDLSSWSKPDVSLEQEQFIDILQHCIDRLPTKMAQLFMLRELDGMASEDICKMMSISTLNNFWVILSRARLQLRHCLDLKW 185 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig10485.1.1 >prot_P-wetherbeei_contig10485.1.1 ID=prot_P-wetherbeei_contig10485.1.1|Name=mRNA_P-wetherbeei_contig10485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=190bp MSSIDPDTWLSLHGDALYGYAVLRVREPALAEDLVQETLLAALSARERYQback to top mRNA from alignment at P-wetherbeei_contig10485:58..627- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig10485.1.1 ID=mRNA_P-wetherbeei_contig10485.1.1|Name=mRNA_P-wetherbeei_contig10485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig10485:58..627- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig10485:58..627- >mRNA_P-wetherbeei_contig10485.1.1 ID=mRNA_P-wetherbeei_contig10485.1.1|Name=mRNA_P-wetherbeei_contig10485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=570bp|location=Sequence derived from alignment at P-wetherbeei_contig10485:58..627- (Phaeothamnion wetherbeei SAG_119_79)back to top |