mRNA_P-wetherbeei_contig10481.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10481.1.1
Unique NamemRNA_P-wetherbeei_contig10481.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A2Z6Q4X7_9GLOM (DDE_3 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6Q4X7_9GLOM)

HSP 1 Score: 111 bits (278), Expect = 1.340e-26
Identity = 62/165 (37.58%), Postives = 92/165 (55.76%), Query Frame = 1
Query:    1 AVRRDDKLVNSFRESMKRFLMNQLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTR 495
            A  R++ L + F   +  + + QL+F DE  K ER + R +  S    R +   ++V    GKR+ +L ALT +G++   + EG  N E   A +   V+P + P+    KN ++IMDNA  HHD  + ELIE TG ++++LP Y+PD NPIE  F  LKA   R
Sbjct:  122 AKERNEFLRSDFILKISDYNLEQLIFIDETAKDERSISRAYGYSTINTRAM---KSVVFIRGKRYTILPALTLDGIIAAEIIEGSCNKENFQAFIINQVIPQMNPFPG--KNSVIIMDNAVIHHDEALVELIEETGGKVVYLPPYSPDFNPIETAFSTLKAWFKR 281          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A4Q4XMQ1_9PEZI (DDE_3 domain-containing protein n=1 Tax=Monosporascus sp. CRB-8-3 TaxID=2211644 RepID=A0A4Q4XMQ1_9PEZI)

HSP 1 Score: 108 bits (271), Expect = 3.210e-26
Identity = 56/145 (38.62%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   64 NQLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRN 498
            +  VF DE G  +RD+ R +  +PKG  P +R         +RFN+L A+T +G+L  F+Y+G  N E     L+  V+P + P+  G ++ +L+MDNAS HH   +  + E  G +L +LP Y+PD NPIE  F  LKA + R+
Sbjct:   57 DMFVFVDESGVDKRDVNRRYGWAPKGFTPFVRQVLKRS---RRFNILPAITVDGLLDTFIYQGSTNREGFTLWLKERVLPLMNPF-PGPRS-VLVMDNASFHHSDEIYTMCEEAGVKLQYLPPYSPDFNPIEAFFSDLKAYIRRH 196          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A2Z6QCD4_9GLOM (DDE_3 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QCD4_9GLOM)

HSP 1 Score: 109 bits (272), Expect = 4.520e-26
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 1
Query:   55 FLMNQLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRNW 501
            ++ NQL+F DE  K ER L R +  S +  R   +   V G   KR+ +L ALT +G +   ++EG  + +  +  +   VVP + PY  GS N +++MDNA  HHDA +  ++E  G R++FLP Y+PD NPIE  F ++K+ + RN+
Sbjct:   97 YISNQLIFIDESAKDERSLSRFYRYSSQNIRACKKVVFVRG---KRYTILPALTLDGFVAIDIFEGAYDKKRFIDFILDQVVPIMNPY-PGS-NSVIMMDNARIHHDANLISILEGLGCRVIFLPPYSPDYNPIETAFSVIKSWIKRNY 240          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A2Z6S1Y4_9GLOM (DDE_3 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6S1Y4_9GLOM)

HSP 1 Score: 109 bits (273), Expect = 7.370e-26
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   55 FLMNQLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRN 498
            +  NQL+F DE  K ER L R +  SP   R +   + VA   GKR+ +L ALT EG +   ++EG  + +  +  +   VVP + PY     N +++MDNA  HHD  +  L+E  G R++FLP Y+PD NPIE  F  +K+ +  N
Sbjct:  141 YTQNQLIFLDESAKDERSLTRLYGYSP---RNIRAQKKVAFIRGKRYTILPALTLEGFVAVDIFEGSCDRKKFVDFVLDQVVPIMNPYPGD--NSVIVMDNAKIHHDNELVVLLEELGCRVVFLPPYSPDYNPIETAFSTIKSWIRHN 283          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: UPI000C7EC74A (IS630 family transposase n=1 Tax=Deinococcus planocerae TaxID=1737569 RepID=UPI000C7EC74A)

HSP 1 Score: 106 bits (264), Expect = 1.160e-25
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 1
Query:    1 AVRRDDKLVNSFRESMKRFLMNQLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQL 489
            A  RD+     F   +   + + L++ DE G  + ++ R     P+G+R +   + V    GK   +L ALT  G   P V EGGVN  V++  +R  +VP LRP        ++++DN  AH   +VREL+E+TGA L++LP Y+PDLNPIE++F  LKA L
Sbjct:    3 AAERDEAWRAQFVADLAHVVPSDLLYLDESG-FQTNMTRTHARCPRGQRAI---DIVPRNRGKNLTLLCALTLAGSTAPLVVEGGVNGSVVITYVREVLVPVLRPGQ------VVVLDNLGAHLRPKVRELVEATGALLVYLPPYSPDLNPIEFMFSKLKAAL 155          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A177T8D6_9BASI (DDE_3 domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177T8D6_9BASI)

HSP 1 Score: 108 bits (269), Expect = 3.080e-25
Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 1
Query:   46 MKRFLMNQLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRN 498
            M +F  +QL F DE     R   R+   SP+G R V     V G   KRF +L A++ +G+  P+V EG VN E     L    +P + PY       +L+MDNAS H  ARVREL+E  G  L++LP Y+P+LNPIE  F ++K  L R 
Sbjct:  148 MGQFDASQLCFADETHADRRTGVRKNGYSPEGTRAVSSTFFVRG---KRFTLLPAMSQDGIFAPWVVEGSVNGERFEWWLEHQCLPLMNPYPGPQS--VLVMDNASTHKGARVRELVEEAGCILIYLPPYSPELNPIELAFSVVKRSLMRT 293          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A2Z6SFT9_9GLOM (DDE_3 domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6SFT9_9GLOM)

HSP 1 Score: 106 bits (265), Expect = 1.100e-24
Identity = 58/148 (39.19%), Postives = 82/148 (55.41%), Query Frame = 1
Query:   55 FLMNQLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRN 498
            F   QLVF DE  K ER L R +  S K  R     +++    GKR+ +L ALT +G +   + EG  N E     +   V+P +  Y   +KN +++MDNA  HHD ++ E IE  G ++L+LP Y+PD NPIE  F  +K+ L RN
Sbjct:  141 FKPEQLVFIDETSKDERSLSRAYGYSIKNVRV---EKSIVFVRGKRYTILPALTLDGFIAADIIEGSCNKERFQTFILTQVLPQMNEYP--NKNSVIVMDNAKIHHDEKLVESIEQMGCKVLYLPPYSPDYNPIETAFSGIKSWLKRN 283          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A015M8P9_RHIIW (DDE_3 domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015M8P9_RHIIW)

HSP 1 Score: 105 bits (263), Expect = 2.120e-24
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 1
Query:   67 QLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRN 498
            QL+F DE  K ER L R +  SPK    +   + V    G R+ +L AL+ +G+L   +  G  N E     +   V+  + PY    KN +L+MDNA  HH+A +  +IES G +++FLP Y+PD NPIE  F ++K+ L +N
Sbjct:  145 QLIFLDESSKDERTLSRRYGYSPKNTSAI---QKVVFLRGTRYTILPALSLDGILAVDIMVGSCNKERFCTFILSQVLLLMNPYP--QKNSVLVMDNAVIHHNAELIRIIESVGCKVVFLPPYSPDYNPIELAFSVIKSWLKKN 283          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: C4YVG9_9RICK (Transposase n=2 Tax=Rickettsia endosymbiont of Ixodes scapularis TaxID=444612 RepID=C4YVG9_9RICK)

HSP 1 Score: 102 bits (255), Expect = 5.320e-24
Identity = 61/168 (36.31%), Postives = 98/168 (58.33%), Query Frame = 1
Query:    7 RRDDKLVNSFRESMKRFLMNQLVFWDEKGKSERDLCREFPLSPKGER----PVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRN 498
            +R+ KL N F E +     ++LVF DE  + E + CRE   SPKGER     V +H+        R +++A L +  ++ P ++EG  N  +    ++  ++  LR   AG    +++MDN + H +++V+ELIES GA +LFLPTY+PDLNPIE  +  +K Q+ ++
Sbjct:   51 KRNHKLRNEFIEKITTIDKDKLVFLDE-SRIEDNACREHGWSPKGERCYGEKVYQHK-------HRISMIAGLCNSNIVAPLIFEGNCNKAIFETYVKDILIKELR---AGQ---VVVMDNINFHKNSKVKELIESVGASILFLPTYSPDLNPIEHYWFKIKHQIRKD 204          
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Match: A0A015K6B3_RHIIW (DDE_3 domain-containing protein n=5 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015K6B3_RHIIW)

HSP 1 Score: 104 bits (259), Expect = 7.970e-24
Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 1
Query:   67 QLVFWDEKGKSERDLCREFPLSPKGERPVIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVVPYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLNPIEWVFGLLKAQLTRN 498
            QL+F DE  K ER  CR++  SP+ +  V +   V G    R+ +L AL+ +G++   + +G    E  +  +  + +P + P+    KN +LIMDNA  HHD  +   IES G ++LFLP Y+PDLNPIE  F  +K  L RN
Sbjct:  145 QLIFIDESSKDERTSCRQYGYSPRNQAAVKKVVFVRG---TRYTLLPALSLDGIISLDIMQGSCTKERFINFI-LAKLPNMNPFP--QKNSVLIMDNAQIHHDEFLVNFIESIGCKILFLPPYSPDLNPIETAFSSIKGWLKRN 282          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10481.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6Q4X7_9GLOM1.340e-2637.58DDE_3 domain-containing protein n=2 Tax=Rhizophagu... [more]
A0A4Q4XMQ1_9PEZI3.210e-2638.62DDE_3 domain-containing protein n=1 Tax=Monosporas... [more]
A0A2Z6QCD4_9GLOM4.520e-2638.26DDE_3 domain-containing protein n=2 Tax=Rhizophagu... [more]
A0A2Z6S1Y4_9GLOM7.370e-2638.51DDE_3 domain-containing protein n=2 Tax=Rhizophagu... [more]
UPI000C7EC74A1.160e-2538.04IS630 family transposase n=1 Tax=Deinococcus plano... [more]
A0A177T8D6_9BASI3.080e-2541.06DDE_3 domain-containing protein n=1 Tax=Tilletia c... [more]
A0A2Z6SFT9_9GLOM1.100e-2439.19DDE_3 domain-containing protein n=1 Tax=Rhizophagu... [more]
A0A015M8P9_RHIIW2.120e-2438.19DDE_3 domain-containing protein n=1 Tax=Rhizophagu... [more]
C4YVG9_9RICK5.320e-2436.31Transposase n=2 Tax=Rickettsia endosymbiont of Ixo... [more]
A0A015K6B3_RHIIW7.970e-2438.89DDE_3 domain-containing protein n=5 Tax=Rhizophagu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10481contigP-wetherbeei_contig10481:179..890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog357244.OTBS_1069
PFAMsDDE_3,HTH_Tnp_IS630
Model size504
Max annot lvl766|Rickettsiales
KEGG koko:K07494
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.5e-22
EggNOG OGsCOG3335@1|root,COG3415@1|root,COG3335@2|Bacteria,COG3415@2|Bacteria,1P76X@1224|Proteobacteria,2U16U@28211|Alphaproteobacteria,47FJ1@766|Rickettsiales
DescriptionDDE superfamily endonuclease
Cds size504
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.4570854-CDS-P-wetherbeei_contig10481:178..2541683185871.4570854-CDS-P-wetherbeei_contig10481:178..254Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10481 179..254 -
1683185871.4677708-CDS-P-wetherbeei_contig10481:357..4881683185871.4677708-CDS-P-wetherbeei_contig10481:357..488Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10481 358..488 -
1683185871.483589-CDS-P-wetherbeei_contig10481:593..8901683185871.483589-CDS-P-wetherbeei_contig10481:593..890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10481 594..890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10481.1.1prot_P-wetherbeei_contig10481.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10481 179..890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10481.1.1

>prot_P-wetherbeei_contig10481.1.1 ID=prot_P-wetherbeei_contig10481.1.1|Name=mRNA_P-wetherbeei_contig10481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
AVRRDDKLVNSFRESMKRFLMNQLVFWDEKGKSERDLCREFPLSPKGERP
VIRHEAVAGPDGKRFNVLAALTSEGVLPPFVYEGGVNVEVLLAALRFSVV
PYLRPYHAGSKNCILIMDNASAHHDARVRELIESTGARLLFLPTYAPDLN
PIEWVFGLLKAQLTRNW*
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mRNA from alignment at P-wetherbeei_contig10481:179..890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10481.1.1 ID=mRNA_P-wetherbeei_contig10481.1.1|Name=mRNA_P-wetherbeei_contig10481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=712bp|location=Sequence derived from alignment at P-wetherbeei_contig10481:179..890- (Phaeothamnion wetherbeei SAG_119_79)
GCCGTGCGACGAGACGACAAGCTCGTCAACAGCTTCCGTGAGAGCATGAA GCGCTTCCTCATGAACCAGCTCGTCTTCTGGGACGAAAAGGGCAAGAGCG AGCGAGACCTTTGCCGGGAGTTCCCCCTCAGCCCGAAGGGCGAGCGGCCG GTCATCCGACACGAAGCTGTTGCCGGTCCCGACGGCAAGCGCTTTAACGT CCTAGCCGCGTTGACGTCAGAGGGCGTGCTCCCGCCCTTCGTGTACGAGG GCGGCGTCAACGTAGAGGTTCTCCTTGCGGCGCTCCGATTCTCGGTGGTG AGGTGTTGACGCTGGCCCAGTTGTTGTCGTTCAGAATCATGGGTCCCAAC TTATTTTTTCAACGCGCGATTGTCGCCCATGTCGTCCGAAAACTGGTTGC AGGTACCATACCTACGGCCTTACCACGCCGGAAGCAAGAACTGCATCTTG ATCATGGACAATGCCTCGGCCCATCACGACGCGCGCGTCCGCGAGCTCAT CGAATCGACGGGCGCTCGCCTGCTGTTCCTCCCGTAAGTGCCGTGCACTC GGTCGCCTGCTTCGGGCACGTGCCGAAACGTCCGTGTTTCTGACACCTCT TTTTCCTCTTTTCTGTGGCAACTGCTTCAACCCCAGAACGTACGCCCCTG ACCTCAACCCCATCGAGTGGGTCTTCGGGTTGTTGAAGGCGCAACTGACG AGAAACTGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10481:179..890-

>mRNA_P-wetherbeei_contig10481.1.1 ID=mRNA_P-wetherbeei_contig10481.1.1|Name=mRNA_P-wetherbeei_contig10481.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig10481:179..890- (Phaeothamnion wetherbeei SAG_119_79)
GCCGTGCGACGAGACGACAAGCTCGTCAACAGCTTCCGTGAGAGCATGAA
GCGCTTCCTCATGAACCAGCTCGTCTTCTGGGACGAAAAGGGCAAGAGCG
AGCGAGACCTTTGCCGGGAGTTCCCCCTCAGCCCGAAGGGCGAGCGGCCG
GTCATCCGACACGAAGCTGTTGCCGGTCCCGACGGCAAGCGCTTTAACGT
CCTAGCCGCGTTGACGTCAGAGGGCGTGCTCCCGCCCTTCGTGTACGAGG
GCGGCGTCAACGTAGAGGTTCTCCTTGCGGCGCTCCGATTCTCGGTGGTA
CCATACCTACGGCCTTACCACGCCGGAAGCAAGAACTGCATCTTGATCAT
GGACAATGCCTCGGCCCATCACGACGCGCGCGTCCGCGAGCTCATCGAAT
CGACGGGCGCTCGCCTGCTGTTCCTCCCAACGTACGCCCCTGACCTCAAC
CCCATCGAGTGGGTCTTCGGGTTGTTGAAGGCGCAACTGACGAGAAACTG
GTAA
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