mRNA_P-wetherbeei_contig1048.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1048.6.1
Unique NamemRNA_P-wetherbeei_contig1048.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1048.6.1 vs. uniprot
Match: A0A835YPK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.320e-7
Identity = 26/49 (53.06%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:  672 MSLLDEVLAMALGRLPREPGISEAEHFRTVAEFHCRVREQWLRELGMLP 818
            + L+D V AM LGR+PR P  S+AEH + VA  H R+R+ WL+E G LP
Sbjct:  110 LPLIDRVAAMILGRMPRNPRASDAEHLQYVAVCHARIRDAWLQEFGRLP 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1048.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YPK8_9STRA2.320e-753.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1048contigP-wetherbeei_contig1048:6440..7427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4J0
Model size988
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.09e-07
EggNOG OGs2CZMF@1|root,2SAWM@2759|Eukaryota
Cds size780
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.1401858-UTR-P-wetherbeei_contig1048:6439..65701683185871.1401858-UTR-P-wetherbeei_contig1048:6439..6570Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1048 6440..6570 +
1683185871.1610105-UTR-P-wetherbeei_contig1048:7350..74271683185871.1610105-UTR-P-wetherbeei_contig1048:7350..7427Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1048 7351..7427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.1513467-CDS-P-wetherbeei_contig1048:6570..73501683185871.1513467-CDS-P-wetherbeei_contig1048:6570..7350Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1048 6571..7350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1048.6.1prot_P-wetherbeei_contig1048.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1048 6571..7350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1048.6.1

>prot_P-wetherbeei_contig1048.6.1 ID=prot_P-wetherbeei_contig1048.6.1|Name=mRNA_P-wetherbeei_contig1048.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MEGEDEEATEGGGGGNGGSGDAVISRALNGGVVANSCARANGAGVREGAA
GAANGAGLGAGGHALQPGGSRPAGLRPGGSVGSCRTGAGGGAAIVSAAAS
SGRVNGAPRNDASNNGASSAAPGAVAPVAALLNGASAAPPRANGIQTAMA
TMAVTATTAAAPRQPQLPSPAPLSQPQLPQMSLLDEVLAMALGRLPREPG
ISEAEHFRTVAEFHCRVREQWLRELGMLPPPARSANPAVAAPAAAAAAAA
APAAVMTSD*
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mRNA from alignment at P-wetherbeei_contig1048:6440..7427+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1048.6.1 ID=mRNA_P-wetherbeei_contig1048.6.1|Name=mRNA_P-wetherbeei_contig1048.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=988bp|location=Sequence derived from alignment at P-wetherbeei_contig1048:6440..7427+ (Phaeothamnion wetherbeei SAG_119_79)
GGTCTTTGGAGGGAAAGCTGGAGCAGATTGACGAGCTGATTGCGCGGCTC
GAGCTGGAAGAGGCGGAGGACGGCGCCGGCTTCATTCCGAGCGACGACGA
CGAAGAAGGAGGAAAAGAAGACGAAGAAGGAATGGAGGGGGAGGACGAGG
AGGCGACGGAAGGCGGGGGCGGCGGTAATGGCGGCAGCGGCGATGCCGTC
ATCAGTCGAGCACTGAACGGCGGCGTCGTGGCGAATAGCTGCGCCAGAGC
CAACGGCGCTGGCGTACGAGAAGGGGCTGCAGGTGCGGCAAACGGCGCTG
GACTCGGAGCCGGCGGCCACGCGCTGCAGCCCGGCGGAAGCAGGCCAGCC
GGTCTTCGGCCCGGCGGTAGTGTTGGCAGTTGCAGGACTGGTGCTGGCGG
TGGTGCCGCCATTGTCTCCGCGGCCGCGTCGAGCGGGCGAGTGAACGGCG
CTCCTCGCAATGACGCCTCCAACAATGGCGCGAGCAGTGCGGCCCCTGGT
GCCGTGGCGCCGGTAGCGGCGCTCCTGAACGGCGCTTCGGCCGCGCCGCC
GCGAGCTAACGGCATACAAACCGCGATGGCAACGATGGCGGTAACTGCGA
CAACGGCGGCGGCGCCGCGCCAGCCACAGCTGCCATCGCCAGCACCGCTG
AGCCAACCGCAGCTGCCGCAAATGTCGCTGCTGGACGAAGTGCTGGCCAT
GGCGCTGGGGCGGCTGCCGCGCGAGCCGGGCATCAGCGAGGCGGAACACT
TTCGCACCGTGGCGGAATTCCACTGCAGGGTGCGGGAGCAGTGGCTGCGA
GAGCTCGGGATGCTGCCGCCGCCGGCGAGATCGGCAAACCCGGCAGTGGC
GGCTCCCGCGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCTGCGGTGATGA
CATCAGACTGATGTGGTTCAATGGCTCTTTGTATGAAGCGTTGTGGCGTA
AAAACCTGCCTACCTGTAATCGTATCATGTCAAGCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1048:6440..7427+

>mRNA_P-wetherbeei_contig1048.6.1 ID=mRNA_P-wetherbeei_contig1048.6.1|Name=mRNA_P-wetherbeei_contig1048.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig1048:6440..7427+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGGGGAGGACGAGGAGGCGACGGAAGGCGGGGGCGGCGGTAATGG
CGGCAGCGGCGATGCCGTCATCAGTCGAGCACTGAACGGCGGCGTCGTGG
CGAATAGCTGCGCCAGAGCCAACGGCGCTGGCGTACGAGAAGGGGCTGCA
GGTGCGGCAAACGGCGCTGGACTCGGAGCCGGCGGCCACGCGCTGCAGCC
CGGCGGAAGCAGGCCAGCCGGTCTTCGGCCCGGCGGTAGTGTTGGCAGTT
GCAGGACTGGTGCTGGCGGTGGTGCCGCCATTGTCTCCGCGGCCGCGTCG
AGCGGGCGAGTGAACGGCGCTCCTCGCAATGACGCCTCCAACAATGGCGC
GAGCAGTGCGGCCCCTGGTGCCGTGGCGCCGGTAGCGGCGCTCCTGAACG
GCGCTTCGGCCGCGCCGCCGCGAGCTAACGGCATACAAACCGCGATGGCA
ACGATGGCGGTAACTGCGACAACGGCGGCGGCGCCGCGCCAGCCACAGCT
GCCATCGCCAGCACCGCTGAGCCAACCGCAGCTGCCGCAAATGTCGCTGC
TGGACGAAGTGCTGGCCATGGCGCTGGGGCGGCTGCCGCGCGAGCCGGGC
ATCAGCGAGGCGGAACACTTTCGCACCGTGGCGGAATTCCACTGCAGGGT
GCGGGAGCAGTGGCTGCGAGAGCTCGGGATGCTGCCGCCGCCGGCGAGAT
CGGCAAACCCGGCAGTGGCGGCTCCCGCGGCGGCGGCGGCGGCGGCGGCG
GCGCCCGCTGCGGTGATGACATCAGACTGA
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