mRNA_P-wetherbeei_contig1048.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1048.4.1
Unique NamemRNA_P-wetherbeei_contig1048.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1048.4.1 vs. uniprot
Match: A0A6H5JAG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.040e-6
Identity = 57/175 (32.57%), Postives = 74/175 (42.29%), Query Frame = 2 
Query:  833 ENARLRLLPAPVILVDIASICGFR-RDAPEAVLASAAAELRQKLGEDFDGRTQELFDIGMARHSIAAAPAAAAADASPSDGAPGFSGAAASSDLPGVGTDSLRRDAAGA---ALAVVAYPERVGGR-STERQWRKVCEPSPHAAAVTLAKRCVRDCNRPLPWKAAAAASLEYAAA 1342
            ENA   L   PV+LVD+A +CGF  + A EA +     ++R  L E F  R++ELFD G A H+                            D   +  +  RR  A +   + AVV YP  +GG  ST   W  V  PSP   AV   +  +   NR L WK      LE  AA
Sbjct:  324 ENAHPELSSVPVLLVDLARVCGFHVKGAEEAGIVGG--KVRAALHESFAERSEELFDTGSAVHA----------------------------DTSTLAEEMRRRSEASSMRSSWAVVDYPAMLGGGVSTSEAWSAVTTPSP-CRAVEAVRTALLGTNRHLVWKRDMLEQLEAVAA 467
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BLAST of mRNA_P-wetherbeei_contig1048.4.1 vs. uniprot
Match: D7G4J0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.160e-5
Identity = 56/174 (32.18%), Postives = 74/174 (42.53%), Query Frame = 2 
Query:  833 ENARLRLLPAPVILVDIASICGFR-RDAPEAVLASAAAELRQKLGEDFDGRTQELFDIGMARHSIAAAPAAAAADASPSDGAPGFSGAAASSDLPGVGTDSLRRDAAGA---ALAVVAYPERVGGR-STERQWRKVCEPSPHAAAVTLAKRCVRDCNRPLPWKAAAAASLEYAA 1339
            E A   L   PV+LVD+A +CGFR + A EA +     ++R  L E F  R++ELF+ G A H+                            D   +  +  RR  A +   + AVV YP  +GG  ST   W  V  PSP   AV   +  +   NR L WK    A LE  A
Sbjct:  323 EKAHPELSSVPVLLVDLARVCGFRVKGAEEADIVGG--KVRAALHESFAERSEELFETGSAVHA----------------------------DTSTLAEEMRRRSEASSMRSSWAVVDYPAMLGGGVSTSEAWSAVTTPSP-CRAVEAVRTALLGTNRHLVWKRDMLAQLEAVA 465
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1048.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAG3_9PHAE5.040e-632.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4J0_ECTSI1.160e-532.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1048contigP-wetherbeei_contig1048:4569..5973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4J0
Model size1407
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-06
EggNOG OGs2CZMF@1|root,2SAWM@2759|Eukaryota
Cds size1074
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.3618047-UTR-P-wetherbeei_contig1048:4568..48991683185871.3618047-UTR-P-wetherbeei_contig1048:4568..4899Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1048 4569..4899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.3700058-CDS-P-wetherbeei_contig1048:4899..59731683185871.3700058-CDS-P-wetherbeei_contig1048:4899..5973Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1048 4900..5973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1048.4.1prot_P-wetherbeei_contig1048.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1048 4900..5973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1048.4.1

>prot_P-wetherbeei_contig1048.4.1 ID=prot_P-wetherbeei_contig1048.4.1|Name=mRNA_P-wetherbeei_contig1048.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=358bp
MASLRLDPALAALVRNSRGDTRAALVDRGSLFFLKRGDDGTGGDGEAAAA
AAAAGTGPTPSIAAESTAAAIAAARTPVAEPPLDSWEDIADDGAAVAPPN
LPSEAPVVVQPSSGPDAEAVWLPDLPPQDAEPTPQDAASADAVAAAAAAA
EQEAAEASAAAEAGVEAENARLRLLPAPVILVDIASICGFRRDAPEAVLA
SAAAELRQKLGEDFDGRTQELFDIGMARHSIAAAPAAAAADASPSDGAPG
FSGAAASSDLPGVGTDSLRRDAAGAALAVVAYPERVGGRSTERQWRKVCE
PSPHAAAVTLAKRCVRDCNRPLPWKAAAAASLEYAAAWCTREAAAVRERA
RASSGADD
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mRNA from alignment at P-wetherbeei_contig1048:4569..5973+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1048.4.1 ID=mRNA_P-wetherbeei_contig1048.4.1|Name=mRNA_P-wetherbeei_contig1048.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1405bp|location=Sequence derived from alignment at P-wetherbeei_contig1048:4569..5973+ (Phaeothamnion wetherbeei SAG_119_79)
TCCCGACATCTCCGTAGCCGCAAAGCTTTTGCGGGAACCCGCAAGATATC
TTTTCCCCTCACCTTCGCTGTGAAGGATCTGAGAGAGGTGAAAGAGAGGG
AGACAACCATAGACAACACTGCTCACTTATCTGGGTTTTCAAAGAATTTA
TCACAACAGCTGTGGGACCCAATTGCTTCCGCAGCATTCCTCCTTGACCA
CATTTTTCATCGGCGCCTTTTAGCCAATTCGTGCCAAGGGCACTGAGCTC
CCTCTCAATGTGAAACACGACGTGGTATTCCTCTTACGGCTCTCCCTCAA
AGACGCTCTTTGAACAGGGCCTGAAAACTTAATGGCGTCGTTGAGGCTAG
ACCCGGCCCTGGCGGCGCTCGTGCGTAACAGCCGCGGCGATACGCGCGCG
GCGCTCGTCGACCGCGGCTCGCTCTTCTTCTTGAAGCGTGGCGATGACGG
AACCGGCGGCGATGGGGAGGCCGCAGCTGCTGCTGCTGCTGCGGGTACAG
GGCCGACGCCGTCAATAGCAGCCGAGTCGACCGCCGCCGCCATCGCTGCT
GCCCGCACGCCGGTTGCCGAACCGCCGCTGGACAGCTGGGAAGATATCGC
CGACGACGGCGCCGCGGTCGCGCCACCAAATCTGCCGTCCGAAGCACCGG
TTGTGGTGCAGCCATCAAGTGGTCCAGACGCCGAGGCGGTGTGGCTACCA
GACCTGCCGCCGCAAGACGCTGAACCAACGCCACAAGACGCCGCCAGTGC
CGACGCTGTTGCTGCGGCGGCGGCAGCGGCAGAGCAGGAGGCGGCAGAAG
CGTCCGCAGCGGCAGAGGCAGGGGTGGAGGCGGAAAACGCGCGGTTGCGG
TTGCTGCCAGCGCCGGTGATTCTGGTGGACATTGCATCTATCTGCGGCTT
CCGGAGGGACGCCCCGGAGGCGGTGCTCGCCTCCGCGGCGGCGGAACTCC
GGCAGAAACTCGGCGAAGACTTCGACGGCCGGACGCAAGAGCTGTTTGAC
ATCGGCATGGCGCGCCACAGCATCGCAGCCGCGCCCGCCGCCGCAGCCGC
CGATGCGTCGCCGTCCGACGGCGCTCCCGGCTTTTCCGGTGCCGCCGCAT
CCAGCGATCTGCCGGGTGTCGGCACAGACTCGTTGCGGCGCGACGCGGCC
GGCGCCGCCCTTGCGGTGGTAGCGTACCCGGAGCGGGTCGGCGGGCGGTC
GACGGAGCGGCAGTGGCGGAAGGTCTGCGAGCCGTCGCCGCACGCCGCGG
CGGTGACGCTCGCCAAGCGATGCGTGCGCGACTGCAACCGGCCGCTGCCG
TGGAAGGCGGCGGCCGCCGCCAGCCTCGAGTACGCCGCCGCCTGGTGCAC
GCGCGAGGCGGCGGCGGTGCGCGAGCGGGCACGGGCGTCGAGTGGTGCCG
ACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1048:4569..5973+

>mRNA_P-wetherbeei_contig1048.4.1 ID=mRNA_P-wetherbeei_contig1048.4.1|Name=mRNA_P-wetherbeei_contig1048.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1074bp|location=Sequence derived from alignment at P-wetherbeei_contig1048:4569..5973+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCGTTGAGGCTAGACCCGGCCCTGGCGGCGCTCGTGCGTAACAG
CCGCGGCGATACGCGCGCGGCGCTCGTCGACCGCGGCTCGCTCTTCTTCT
TGAAGCGTGGCGATGACGGAACCGGCGGCGATGGGGAGGCCGCAGCTGCT
GCTGCTGCTGCGGGTACAGGGCCGACGCCGTCAATAGCAGCCGAGTCGAC
CGCCGCCGCCATCGCTGCTGCCCGCACGCCGGTTGCCGAACCGCCGCTGG
ACAGCTGGGAAGATATCGCCGACGACGGCGCCGCGGTCGCGCCACCAAAT
CTGCCGTCCGAAGCACCGGTTGTGGTGCAGCCATCAAGTGGTCCAGACGC
CGAGGCGGTGTGGCTACCAGACCTGCCGCCGCAAGACGCTGAACCAACGC
CACAAGACGCCGCCAGTGCCGACGCTGTTGCTGCGGCGGCGGCAGCGGCA
GAGCAGGAGGCGGCAGAAGCGTCCGCAGCGGCAGAGGCAGGGGTGGAGGC
GGAAAACGCGCGGTTGCGGTTGCTGCCAGCGCCGGTGATTCTGGTGGACA
TTGCATCTATCTGCGGCTTCCGGAGGGACGCCCCGGAGGCGGTGCTCGCC
TCCGCGGCGGCGGAACTCCGGCAGAAACTCGGCGAAGACTTCGACGGCCG
GACGCAAGAGCTGTTTGACATCGGCATGGCGCGCCACAGCATCGCAGCCG
CGCCCGCCGCCGCAGCCGCCGATGCGTCGCCGTCCGACGGCGCTCCCGGC
TTTTCCGGTGCCGCCGCATCCAGCGATCTGCCGGGTGTCGGCACAGACTC
GTTGCGGCGCGACGCGGCCGGCGCCGCCCTTGCGGTGGTAGCGTACCCGG
AGCGGGTCGGCGGGCGGTCGACGGAGCGGCAGTGGCGGAAGGTCTGCGAG
CCGTCGCCGCACGCCGCGGCGGTGACGCTCGCCAAGCGATGCGTGCGCGA
CTGCAACCGGCCGCTGCCGTGGAAGGCGGCGGCCGCCGCCAGCCTCGAGT
ACGCCGCCGCCTGGTGCACGCGCGAGGCGGCGGCGGTGCGCGAGCGGGCA
CGGGCGTCGAGTGGTGCCGACGAC
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