mRNA_P-wetherbeei_contig10477.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10477.1.1
Unique NamemRNA_P-wetherbeei_contig10477.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10477.1.1 vs. uniprot
Match: A0A2N6GKM3_9GAMM (PilX_N domain-containing protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A2N6GKM3_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 1.610e-5
Identity = 47/158 (29.75%), Postives = 70/158 (44.30%), Query Frame = 1 
Query:   10 RAFQNSEGARTVIGQVLSAHLYNNGWPPSAGGVGTGEYDIPEDVEPVELTAN-FTTNENGTLEEVGPPTFTRDPDIRFRHDINGDDVVDTNDMFANIWVTFLQTRLREGGSGQVGAGTTGAGASNGNSLTFVDIRSRGA-APGNAQLITSAEFRALVR 477
            ++F+ SE  R   G V+ AH++  GW        T   D    +  V+ T + +  N+ G      PP +T+D +   R   NG+ +     ++ N     L        SG  G G   AG+    S  F D+RS+G  A  NA  +TSA+ R LVR
Sbjct:   54 KSFEYSEAPRPKAGDVMDAHVFERGWTGVLTDSTTESADYAS-LNVVDTTKDLYLKNDTGEDPLANPPVYTKDMEYS-RTASNGETIKSDISVYRN-GARVLPGHSAAMVSGYEGTGKASAGS---GSAVFYDVRSKGQHAASNANTVTSADVRILVR 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10477.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2N6GKM3_9GAMM1.610e-529.75PilX_N domain-containing protein n=1 Tax=Sedimenti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10477contigP-wetherbeei_contig10477:1..480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size480
Hectar predicted targeting categoryother localisation
Exons1
Cds size480
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185871.0316224-CDS-P-wetherbeei_contig10477:0..4801683185871.0316224-CDS-P-wetherbeei_contig10477:0..480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10477 1..480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10477.1.1prot_P-wetherbeei_contig10477.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10477 1..480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10477.1.1

>prot_P-wetherbeei_contig10477.1.1 ID=prot_P-wetherbeei_contig10477.1.1|Name=mRNA_P-wetherbeei_contig10477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
LSRRAFQNSEGARTVIGQVLSAHLYNNGWPPSAGGVGTGEYDIPEDVEPV
ELTANFTTNENGTLEEVGPPTFTRDPDIRFRHDINGDDVVDTNDMFANIW
VTFLQTRLREGGSGQVGAGTTGAGASNGNSLTFVDIRSRGAAPGNAQLIT
SAEFRALVR*
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mRNA from alignment at P-wetherbeei_contig10477:1..480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10477.1.1 ID=mRNA_P-wetherbeei_contig10477.1.1|Name=mRNA_P-wetherbeei_contig10477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig10477:1..480+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCACGTCGGGCGTTTCAGAATTCCGAGGGTGCCCGTACCGTCATCGG
CCAAGTGCTCTCGGCGCATCTCTACAACAATGGCTGGCCGCCGTCTGCGG
GTGGCGTTGGTACCGGCGAATACGATATTCCAGAGGACGTCGAGCCAGTG
GAATTGACTGCGAATTTCACCACCAACGAAAACGGCACCCTCGAGGAGGT
CGGCCCGCCGACTTTCACACGTGACCCGGACATCCGCTTCAGGCATGACA
TCAATGGTGACGATGTGGTCGATACCAACGACATGTTCGCCAATATCTGG
GTGACCTTTTTGCAGACACGCCTGCGCGAAGGCGGCAGCGGACAAGTCGG
CGCCGGGACCACCGGTGCCGGTGCCAGCAATGGCAACTCGCTGACATTCG
TCGATATACGCTCGCGCGGTGCCGCGCCCGGCAATGCCCAATTGATTACC
AGCGCGGAATTTCGCGCGCTGGTGAGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10477:1..480+

>mRNA_P-wetherbeei_contig10477.1.1 ID=mRNA_P-wetherbeei_contig10477.1.1|Name=mRNA_P-wetherbeei_contig10477.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig10477:1..480+ (Phaeothamnion wetherbeei SAG_119_79)
CTGTCACGTCGGGCGTTTCAGAATTCCGAGGGTGCCCGTACCGTCATCGG
CCAAGTGCTCTCGGCGCATCTCTACAACAATGGCTGGCCGCCGTCTGCGG
GTGGCGTTGGTACCGGCGAATACGATATTCCAGAGGACGTCGAGCCAGTG
GAATTGACTGCGAATTTCACCACCAACGAAAACGGCACCCTCGAGGAGGT
CGGCCCGCCGACTTTCACACGTGACCCGGACATCCGCTTCAGGCATGACA
TCAATGGTGACGATGTGGTCGATACCAACGACATGTTCGCCAATATCTGG
GTGACCTTTTTGCAGACACGCCTGCGCGAAGGCGGCAGCGGACAAGTCGG
CGCCGGGACCACCGGTGCCGGTGCCAGCAATGGCAACTCGCTGACATTCG
TCGATATACGCTCGCGCGGTGCCGCGCCCGGCAATGCCCAATTGATTACC
AGCGCGGAATTTCGCGCGCTGGTGAGATGA
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