mRNA_P-wetherbeei_contig10475.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10475.1.1
Unique NamemRNA_P-wetherbeei_contig10475.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10475.1.1 vs. uniprot
Match: D8LFY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY5_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 8.770e-55
Identity = 104/213 (48.83%), Postives = 132/213 (61.97%), Query Frame = 1 
Query:    1 SLFVQKSGYVGSLRRVSRRRHALGKGELFVIPPIPVTP-QDGRFHGRLGPSLFGNGGHMYLTFCKPTQTDEAVAAARIFSVTPPXXXLQPPVPMTRAATTGTAMPLPXXXXXMAARAATNGADRIRYGDTCQIVAKKIRPRGEGAERAPVVRAAVTHSLRRHQAGVGGFLRSDGKGKPFKFVVHHAPPHVTAVAVYAVGADGRIMETHTHHKV 636
            S +  K+GYVG LRR SR+R+++GKGELFV+PP+P +P  DGR HGRLGPSLFGNGGHM L  CK  +              PP    +P     R++ T    P        A R   + A  I YGD+C++VAKK+RP  EG     VVRA VTH  RRHQ  +GG+LRSDGKG    F +HHAPP V+ V+VY+  ADG + +THTH+K+
Sbjct:  284 SNYADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYSDGRLHGRLGPSLFGNGGHMRLKLCKTPK--------------PPPESSRP----VRSSPT----PASPVQDGGAGREGEDAAAAILYGDSCEMVAKKVRPHREG-----VVRAPVTHFRRRHQIQLGGYLRSDGKGYACAFTIHHAPPRVSMVSVYSFSADGTVADTHTHYKI 469
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BLAST of mRNA_P-wetherbeei_contig10475.1.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.680e-45
Identity = 100/254 (39.37%), Postives = 129/254 (50.79%), Query Frame = 1 
Query:    1 SLFVQKSGYVGSLRRVSRRRHALGKGELFVIPPIPVTP------------------------------------------QDGRFHGRLGPSLFGNGGHMYLTFCKPTQTDEAVAAARIFSVTPPXXXLQPPVPMTRAATTGTAMPLPXXXXXMAARAATNGADRIRYGDTCQIVAKKIRPRGEGAERAPVVRAAVTHSLRRHQAGVGGFLRSDGKGKPFKFVVHHAPPHVTAVAVYAVGADGRIMETHTHHKV 636
            S +  K+GYVG LRR SR+R+++GKGELFV+PP+P +P                                          +DGR HGRLGPSLFGNGGHM L  C   +                      P P T      ++ P        A R   + A  I YGD+C++VAKK+RP  EG     VVRA VTH  RRHQ  +GG+LRSDGKG    F +HHAPP V+ V+VY+  +DG + +THTH+K+
Sbjct:  282 SNYADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYSIFHECCFKIVDPHSEKEDGDVLHFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFGNGGHMRLKLCNTPK----------------------PPPETSRMVRSSSTPASTVQDGGAGREGEDAA-AIFYGDSCEMVAKKVRPHREG-----VVRAPVTHFRRRHQIQLGGYLRSDGKGYACAFTIHHAPPRVSMVSVYSFSSDGTVADTHTHYKI 507
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10475.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFY5_ECTSI8.770e-5548.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K175_9PHAE2.680e-4539.37CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10475contigP-wetherbeei_contig10475:476..2032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size636
Hectar predicted targeting categorymitochondrion
Exons3
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.983097-CDS-P-wetherbeei_contig10475:475..5921683185870.983097-CDS-P-wetherbeei_contig10475:475..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10475 476..592 +
1683185870.9922762-CDS-P-wetherbeei_contig10475:1312..15581683185870.9922762-CDS-P-wetherbeei_contig10475:1312..1558Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10475 1313..1558 +
1683185871.0009856-CDS-P-wetherbeei_contig10475:1759..20321683185871.0009856-CDS-P-wetherbeei_contig10475:1759..2032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10475 1760..2032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10475.1.1prot_P-wetherbeei_contig10475.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10475 476..2032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10475.1.1

>prot_P-wetherbeei_contig10475.1.1 ID=prot_P-wetherbeei_contig10475.1.1|Name=mRNA_P-wetherbeei_contig10475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
SLFVQKSGYVGSLRRVSRRRHALGKGELFVIPPIPVTPQDGRFHGRLGPS
LFGNGGHMYLTFCKPTQTDEAVAAARIFSVTPPPPPLQPPVPMTRAATTG
TAMPLPPPPVPMAARAATNGADRIRYGDTCQIVAKKIRPRGEGAERAPVV
RAAVTHSLRRHQAGVGGFLRSDGKGKPFKFVVHHAPPHVTAVAVYAVGAD
GRIMETHTHHKV
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mRNA from alignment at P-wetherbeei_contig10475:476..2032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10475.1.1 ID=mRNA_P-wetherbeei_contig10475.1.1|Name=mRNA_P-wetherbeei_contig10475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1557bp|location=Sequence derived from alignment at P-wetherbeei_contig10475:476..2032+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTTTTCGTGCAGAAGAGCGGCTACGTGGGCTCGCTGCGGCGAGTCAG
CCGGCGCCGCCACGCACTGGGCAAGGGGGAGCTCTTCGTCATCCCGCCGA
TCCCTGTCACGCCGCAGGTGCACCCGTTTTTCCCTCTTGTAATCGATGTG
CGCGCTGCGATTCCGGCGCACTTTCTTTCCAAGCTTGTTTCTTTCGGCTG
CGGTTTGGTTGGCCGGACCCGCTGCGTTGTTGGATTCGTGTGGTCGCATA
GGAGCCTCCTTCGGGGCGGGGATTAGCTCACATCGCTCTTCCTCACTCTT
CAATAGCCCGATCGCTTGCCGCGTAGCGCCTGACCTCGTCAGGCTTTTCT
CGTCACGCCGTCACTTCTTCTCTTCTTTTTGACATTATCGGCCGGCCGCA
TCTGCCTTGCCTTTTGATGGCCTGCCACCCGGCGTTTGCGGCGTTTGGGG
CGGCGCTGCTTGCGGCGTTGGCTCCGGCTGTGGCTGCAGCTGGTGTTTCA
CGAGGCGTGTTTTAAGATCGTAGACCCTCTCAGTGAGCACGGGGAGCGCG
ACGGCGACGTGCTCCACTACGGGGATGTTATTACGCTTGTTGACGACCGC
CGCATGGTGAGTCGGTGGGTGCTATGCTTCGCCGCTGTCGTTGCTTTCAT
GACATGCGTTCGGCCACGGCCGCTGCTCTGTTGATGTGTGTGCCGCTGCC
GTTGCTATGTAACCTGCCTTCTGTCATGACCGCTGCCCTCGTCATCGACC
AATTCCAATTTGATGTTAAACAAAAGAGAAAGCGCCTTCCTTGGGGTCTC
TATGTATGACCGCTGCTACCAGGTGTGGAACAATAAGGACGGCCGCTTCC
ACGGGCGCCTCGGCCCGTCACTCTTCGGCAACGGCGGCCACATGTACTTG
ACCTTTTGCAAGCCCACGCAGACGGACGAGGCCGTGGCCGCCGCGCGCAT
ATTCAGCGTGACGCCGCCGCCGCCGCCGCTGCAGCCGCCGGTGCCAATGA
CGCGGGCGGCGACGACCGGCACGGCGATGCCACTGCCGCCGCCGCCGGTG
CCGATGGCGGCGCGGGCAGCGACGAACGGTGCGGTGACCCCGCCACCGCC
GCGCAGCGGCAGCCCCGGCACAGAGCCGGTGATCAACGGCGGCGGCTATG
GCAATGGCGTCGGGAATGGCATGGGCGGCGGCGGCGCCGACTCTCCGACA
GCGTTTGCAGCAACGGCGGGAGGGCCGTCGGCGTCGTTGTCGCCGGCGCA
CGGCGCTGCGGCGGCAGCGGCTGCGGGGCTGCAGGACCGCATACGGTACG
GCGACACGTGCCAGATCGTCGCCAAGAAGATCCGTCCGCGCGGGGAGGGC
GCCGAACGGGCGCCGGTAGTGCGCGCCGCCGTGACGCACTCGCTGCGGCG
GCACCAGGCGGGCGTTGGCGGCTTTTTACGCTCGGACGGCAAGGGGAAGC
CGTTCAAGTTCGTGGTGCACCACGCGCCGCCACATGTCACGGCCGTGGCT
GTGTACGCGGTTGGGGCCGACGGACGCATCATGGAGACGCACACCCACCA
CAAGGTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10475:476..2032+

>mRNA_P-wetherbeei_contig10475.1.1 ID=mRNA_P-wetherbeei_contig10475.1.1|Name=mRNA_P-wetherbeei_contig10475.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig10475:476..2032+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTTTTCGTGCAGAAGAGCGGCTACGTGGGCTCGCTGCGGCGAGTCAG
CCGGCGCCGCCACGCACTGGGCAAGGGGGAGCTCTTCGTCATCCCGCCGA
TCCCTGTCACGCCGCAGGACGGCCGCTTCCACGGGCGCCTCGGCCCGTCA
CTCTTCGGCAACGGCGGCCACATGTACTTGACCTTTTGCAAGCCCACGCA
GACGGACGAGGCCGTGGCCGCCGCGCGCATATTCAGCGTGACGCCGCCGC
CGCCGCCGCTGCAGCCGCCGGTGCCAATGACGCGGGCGGCGACGACCGGC
ACGGCGATGCCACTGCCGCCGCCGCCGGTGCCGATGGCGGCGCGGGCAGC
GACGAACGGTGCGGACCGCATACGGTACGGCGACACGTGCCAGATCGTCG
CCAAGAAGATCCGTCCGCGCGGGGAGGGCGCCGAACGGGCGCCGGTAGTG
CGCGCCGCCGTGACGCACTCGCTGCGGCGGCACCAGGCGGGCGTTGGCGG
CTTTTTACGCTCGGACGGCAAGGGGAAGCCGTTCAAGTTCGTGGTGCACC
ACGCGCCGCCACATGTCACGGCCGTGGCTGTGTACGCGGTTGGGGCCGAC
GGACGCATCATGGAGACGCACACCCACCACAAGGTA
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