mRNA_P-wetherbeei_contig10469.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10469.1.1
Unique NamemRNA_P-wetherbeei_contig10469.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10469.1.1 vs. uniprot
Match: D7FVL7_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.170e-20
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 1 
Query:    1 VQILKMLQVSKFKVRLALVVDIPLTALNLYTLWYIDSSL--KPVYLTSLTIAVFSAGKLSTQIEYHAELRHRKRKLEELL 234
            V+ILK LQ++KFKV+LA+V+D+PLT LNL+ LW +D  L    ++LTSL IAVFSAGK+ST IEYH ELR RKRKLE LL
Sbjct:  683 VKILKHLQINKFKVQLAVVMDLPLTILNLWLLWMVDPELIKSALFLTSLIIAVFSAGKISTLIEYHLELRQRKRKLERLL 762
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10469.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVL7_ECTSI1.170e-2066.25Hypothetical leucine rich repeat and GCG domain-co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10469contigP-wetherbeei_contig10469:813..1659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVL7
PFAMsCupin_4,DUF5011,EGF_CA,Ephrin_rec_like,HYR,SH2
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K17307
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.81e-20
EggNOG OGsKOG1217@1|root,KOG1217@2759|Eukaryota
Descriptioncalcium ion binding
Cds size219
COG categoryO
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.8131094-CDS-P-wetherbeei_contig10469:812..9291683185870.8131094-CDS-P-wetherbeei_contig10469:812..929Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10469 813..929 -
1683185870.8243108-CDS-P-wetherbeei_contig10469:1542..16441683185870.8243108-CDS-P-wetherbeei_contig10469:1542..1644Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10469 1543..1644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.8340464-UTR-P-wetherbeei_contig10469:1644..16591683185870.8340464-UTR-P-wetherbeei_contig10469:1644..1659Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10469 1645..1659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10469.1.1prot_P-wetherbeei_contig10469.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10469 813..1644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10469.1.1

>prot_P-wetherbeei_contig10469.1.1 ID=prot_P-wetherbeei_contig10469.1.1|Name=mRNA_P-wetherbeei_contig10469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MLQVSKFKVRLALVVDIPLTALNLYTLWYIDSSLKPVYLTSLTIAVFSAG
KLSTQIEYHAELRHRKRKLEELL
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mRNA from alignment at P-wetherbeei_contig10469:813..1659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10469.1.1 ID=mRNA_P-wetherbeei_contig10469.1.1|Name=mRNA_P-wetherbeei_contig10469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=847bp|location=Sequence derived from alignment at P-wetherbeei_contig10469:813..1659- (Phaeothamnion wetherbeei SAG_119_79)
GTGCAGATACTGAAAATGCTTCAAGTAAGCAAGTTCAAGGTGCGGCTGGC
CCTCGTCGTCGATATTCCCCTCACTGCCCTTAACCTCTACACCCTCTGGT
ACATCGACAGCTCGCTGGTGCAGGCGAGTCTATAAACTTTGTGGGTGGCA
ACTGCCGGCGAACGGAGTGAGAGCCTGCAATTGAACTTTAGAAAATCCGC
TCCATTGGCCATAATTTTAACGGCGGGATACCTTGGCCTGCGTTCCTGCA
TCGATTGTCTCGCTCTGTTACAGTCACGGATGCCTGCGACCTTGTTTTGC
CGCAGGCGGGGTGGCAATGTCTTACTGGACCATAACGCGTAGCTTGGTGA
AGGAAACTGGAATGGCTAGGGATCACAGCTTACTTGAACTCAGTGTCACC
CTACAATGCGGGGATTTCAATCCTCACTCCTCCGTTCCCGTGTTCCTTCT
GTATTTACTTTCGAGCCAGGCGCTCCTGCTGTTATCCATGAATCCTTCGT
TGCTACCCTTCCTAATTTACTTCTCCCCACCCGCCAGCCCGCCGCCGCCC
CTGAGCTAGGAAATCCGAAAATCCAGGAAATCTTTGTGGATACCGAAACC
CATGCGCCGAAACAGCACTATGATACCCGTCCTCTGACCCACTTCTGCCA
CCCCTTTGCCACTAGCGCATACATTTTCTGGTTTTCTGATATTCTCCGTT
CCCCGTCCGGTTTGGCGCCCTTCCTGGCAGAAGCCCGTGTACCTGACAAG
CCTCACCATCGCCGTCTTCAGCGCGGGCAAGCTGAGCACGCAGATAGAGT
ACCACGCCGAACTCCGCCACCGCAAGCGCAAGCTGGAGGAATTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10469:813..1659-

>mRNA_P-wetherbeei_contig10469.1.1 ID=mRNA_P-wetherbeei_contig10469.1.1|Name=mRNA_P-wetherbeei_contig10469.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig10469:813..1659- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTCAAGTAAGCAAGTTCAAGGTGCGGCTGGCCCTCGTCGTCGATAT
TCCCCTCACTGCCCTTAACCTCTACACCCTCTGGTACATCGACAGCTCGC
TGAAGCCCGTGTACCTGACAAGCCTCACCATCGCCGTCTTCAGCGCGGGC
AAGCTGAGCACGCAGATAGAGTACCACGCCGAACTCCGCCACCGCAAGCG
CAAGCTGGAGGAATTGCTG
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