mRNA_P-wetherbeei_contig10468.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10468.1.2
Unique NamemRNA_P-wetherbeei_contig10468.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10468.1.2 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 9.670e-32
Identity = 79/195 (40.51%), Postives = 110/195 (56.41%), Query Frame = 1 
Query:    1 MVDRTTEFNGAVRIFQKAAASANGTPP------KEERHTAPPGDFTTAAANVAVGFQGTMKLIERLRKLVGRKGLSNDPTVEIGEVAGFFKGDMATLQTELTALQRSLRPCGDPFRYALPFLVRTLPASTSGRYADGCAAQSPPANTQRQKHCQCVCAALRKTAELQMRAFQEALQQRTAILRQQNERRKHFSHT 567
            M DRT EF+GAV  F+    + N +        + +       +F   AA+VAVGF+GT +LI RL+KLVGRKG SN+P  EI +V   F+GDMA LQ ++++LQR                           YADG    SPPAN+QRQ HC  +   LR++A+   +AF++AL  R A+ +QQNER++ FSH+
Sbjct:    3 MTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQR---------------------------YADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHS 170
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BLAST of mRNA_P-wetherbeei_contig10468.1.2 vs. uniprot
Match: A0A835Z5V3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 8.410e-30
Identity = 76/190 (40.00%), Postives = 110/190 (57.89%), Query Frame = 1 
Query:    1 MVDRTTEFNGAVRIFQKAAASANGTPPKEERHTAP-PGDFTTAAANVAVGFQGTMKLIERLRKLVGRKGLSNDPTVEIGEVAGFFKGDMATLQTELTALQRSLRPCGDPFRYALPFLVRTLPASTSGRYADGCAAQSPPANTQRQKHCQCVCAALRKTAELQMRAFQEALQQRTAILRQQNERRKHFSHT 567
            M+DRT EF G +R+  +     +G P +  ++ AP P DFT A + +A+  +GT KLIE+L +LVGRKG SNDPT+EI +V+  FKGDM  +Q EL+ALQ  +                      SG+        +P   +QR KH   +  AL++ A+ Q+ AFQ AL+QR A++R+ N+RRK +S T
Sbjct:    1 MIDRTAEFQGCIRVLHQH----DGRPDQRPQYEAPQPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQAFID-------------------GRSGKRG------APAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTT 161
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BLAST of mRNA_P-wetherbeei_contig10468.1.2 vs. uniprot
Match: A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.650e-24
Identity = 80/203 (39.41%), Postives = 107/203 (52.71%), Query Frame = 1 
Query:    1 MVDRTTEFNGAVRIFQKAAASANGTPPKEERH-----------TAPP---GDFTTAAANVAVGFQGTMKLIERLRKLVGRKGLSNDPTVEIGEVAGFFKGDMATLQTELTALQRSLRPCGDPFRYALPFLVRTLPASTSGRYADGCAAQSPPANTQRQKHCQCVCAALRKTAELQMRAFQEALQQRTAILRQQNERRKHFSHT 567
            M+DR+ EF G +++F          PP+E+             TAPP    DF  AAA +A G+ GT +L++RL++LV RKG+ NDPT EI +V   FK D+A LQ ++ +L   LR  G  +R A     R       G    GC  Q      QR +HC CV   LR  A    RAFQ ALQ R  IL++Q +RRK F+H+
Sbjct:    1 MMDRSREFQGLLKLF-----GITDLPPEEDESDPFEPFPSPTSTAPPPSTSDFGLAAARIAQGYSGTWRLVQRLQRLVTRKGMHNDPTAEIEDVTAVFKKDLAGLQGDIESL---LRHAGRHYRLAGVDGGRKDNVDR-GHEKGGCHDQ------QRHRHCTCVVDTLRTRAGEHARAFQAALQTRQHILQEQADRRKRFTHS 188
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BLAST of mRNA_P-wetherbeei_contig10468.1.2 vs. uniprot
Match: C4JWS7_UNCRE (t-SNARE coiled-coil homology domain-containing protein n=5 Tax=Onygenaceae TaxID=33184 RepID=C4JWS7_UNCRE)

HSP 1 Score: 54.3 bits (129), Expect = 2.260e-5
Identity = 36/106 (33.96%), Postives = 50/106 (47.17%), Query Frame = 1 
Query:    7 DRTTEFNGAVRIFQKAAASANGTP-------PKEERHTAPP--GDFTTAAANVAVGFQGTMKLIERLRKLVGRKGLSNDPTVEIGEVAGFFKGDMATLQTELTALQ 297
            DRTTEF   +   QK  AS+           P       PP   +F   AA +  G   T   ++RL +L  +K L +D  VEI E+    K D+A+L T++ ALQ
Sbjct:    8 DRTTEFRSILGQAQKRLASSKADVHRQTLLRPDTSPQNGPPRKSEFARRAAEIGRGITATTAKLQRLAQLAKKKSLFDDRPVEISELTYVIKQDLASLNTQIAALQ 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10468.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE9.670e-3240.51t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z5V3_9STRA8.410e-3040.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4D9CWV4_9STRA1.650e-2439.41t-SNARE coiled-coil homology domain-containing pro... [more]
C4JWS7_UNCRE2.260e-533.96t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10468contigP-wetherbeei_contig10468:218..1071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LR19
Preferred nameSTX5
PFAMsSNARE,Syntaxin-5_N
Model size567
Max annot lvl2759|Eukaryota
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
Exons3
Evalue5.72e-31
EggNOG OGsKOG0812@1|root,KOG0812@2759|Eukaryota
Descriptionvesicle docking
Cds size567
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.7617774-CDS-P-wetherbeei_contig10468:217..3851683185870.7617774-CDS-P-wetherbeei_contig10468:217..385Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10468 218..385 +
1683185870.7733197-CDS-P-wetherbeei_contig10468:478..6111683185870.7733197-CDS-P-wetherbeei_contig10468:478..611Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10468 479..611 +
1683185870.782543-CDS-P-wetherbeei_contig10468:805..10711683185870.782543-CDS-P-wetherbeei_contig10468:805..1071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10468 806..1071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10468.1.2prot_P-wetherbeei_contig10468.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10468 218..1071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10468.1.2

>prot_P-wetherbeei_contig10468.1.2 ID=prot_P-wetherbeei_contig10468.1.2|Name=mRNA_P-wetherbeei_contig10468.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MVDRTTEFNGAVRIFQKAAASANGTPPKEERHTAPPGDFTTAAANVAVGF
QGTMKLIERLRKLVGRKGLSNDPTVEIGEVAGFFKGDMATLQTELTALQR
SLRPCGDPFRYALPFLVRTLPASTSGRYADGCAAQSPPANTQRQKHCQCV
CAALRKTAELQMRAFQEALQQRTAILRQQNERRKHFSHT
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mRNA from alignment at P-wetherbeei_contig10468:218..1071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10468.1.2 ID=mRNA_P-wetherbeei_contig10468.1.2|Name=mRNA_P-wetherbeei_contig10468.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=854bp|location=Sequence derived from alignment at P-wetherbeei_contig10468:218..1071+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGACCGGACCACAGAGTTCAATGGCGCCGTTCGGATCTTCCAGAA
AGCCGCTGCGAGCGCGAATGGGACGCCGCCAAAGGAGGAGCGGCATACTG
CTCCCCCTGGCGACTTCACTACGGCGGCTGCAAACGTCGCAGTTGGCTTC
CAGGGAACAATGAAGCTGGTGCGCGACATTGCATATCGTATTTGGGAAGT
TACGGCTTTTGAATTGTGTTTTGCATCGTCTCTTCGTACTCTTCTTCTCC
CGTTCCGCCAGATTGAGCGTTTACGTAAGCTCGTTGGCCGAAAGGGCCTC
AGCAATGACCCTACAGTGGAGATCGGCGAGGTGGCCGGATTCTTCAAAGG
CGACATGGCGACCCTGCAGACGGAACTCACCGCCCTTCAGAGGTGTGCGC
TTTGCACCTTTACACCTTCTCCATCGTGTTGATTGGCGTCTTTTCTGGCT
GAAAACGCCTCCTTGTTTTCTTTTACAGTAGGAGCGTCTGGCAAGGCCAG
GAATGTAGGATCTATTTGTGACTTTTCTTCTATCTTGGCGTTGAATGAAG
CTTCAATAACCTCGTAGCTGGCCGCTGCGAACCTGCAGCGCTGCGACCCT
GCGGCGACCCCTTTCGCTACGCCCTCCCTTTTCTCGTTCGTACTCTTCCT
GCCTCGACCTCCGGCAGATACGCGGATGGCTGCGCCGCCCAGAGCCCGCC
CGCCAATACCCAGCGGCAGAAGCACTGCCAATGCGTCTGCGCTGCGCTCC
GCAAGACGGCGGAGCTGCAGATGCGGGCCTTCCAGGAGGCGCTGCAGCAG
CGAACGGCGATTCTGCGCCAGCAGAACGAGCGGCGGAAGCACTTTTCGCA
CACT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10468:218..1071+

>mRNA_P-wetherbeei_contig10468.1.2 ID=mRNA_P-wetherbeei_contig10468.1.2|Name=mRNA_P-wetherbeei_contig10468.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig10468:218..1071+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGACCGGACCACAGAGTTCAATGGCGCCGTTCGGATCTTCCAGAA
AGCCGCTGCGAGCGCGAATGGGACGCCGCCAAAGGAGGAGCGGCATACTG
CTCCCCCTGGCGACTTCACTACGGCGGCTGCAAACGTCGCAGTTGGCTTC
CAGGGAACAATGAAGCTGATTGAGCGTTTACGTAAGCTCGTTGGCCGAAA
GGGCCTCAGCAATGACCCTACAGTGGAGATCGGCGAGGTGGCCGGATTCT
TCAAAGGCGACATGGCGACCCTGCAGACGGAACTCACCGCCCTTCAGAGG
TCGCTGCGACCCTGCGGCGACCCCTTTCGCTACGCCCTCCCTTTTCTCGT
TCGTACTCTTCCTGCCTCGACCTCCGGCAGATACGCGGATGGCTGCGCCG
CCCAGAGCCCGCCCGCCAATACCCAGCGGCAGAAGCACTGCCAATGCGTC
TGCGCTGCGCTCCGCAAGACGGCGGAGCTGCAGATGCGGGCCTTCCAGGA
GGCGCTGCAGCAGCGAACGGCGATTCTGCGCCAGCAGAACGAGCGGCGGA
AGCACTTTTCGCACACT
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