mRNA_P-wetherbeei_contig10464.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10464.1.1
Unique NamemRNA_P-wetherbeei_contig10464.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10464.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10464contigP-wetherbeei_contig10464:51..759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size493
Hectar predicted targeting categorysignal anchor
Exons2
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.566115-CDS-P-wetherbeei_contig10464:50..2361683185870.566115-CDS-P-wetherbeei_contig10464:50..236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10464 51..236 -
1683185870.5757864-CDS-P-wetherbeei_contig10464:453..7591683185870.5757864-CDS-P-wetherbeei_contig10464:453..759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10464 454..759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10464.1.1prot_P-wetherbeei_contig10464.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10464 51..759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10464.1.1

>prot_P-wetherbeei_contig10464.1.1 ID=prot_P-wetherbeei_contig10464.1.1|Name=mRNA_P-wetherbeei_contig10464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
TKRKHSAILLPSLPQFPFVRHRPRRFSLHRAQPFSFQMGSGKPYSGRWQF
CALFGLAAVCLGLPLFWNTTTNELSTESCTGPGIGHTIGDNGEVLRFTHV
DGDSTSLPALLRSVWDAKAAEGVFRFSVKDLPTRHAEGPRLGWAVELLAI
VGRRKPFPDPLPTY
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mRNA from alignment at P-wetherbeei_contig10464:51..759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10464.1.1 ID=mRNA_P-wetherbeei_contig10464.1.1|Name=mRNA_P-wetherbeei_contig10464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=709bp|location=Sequence derived from alignment at P-wetherbeei_contig10464:51..759- (Phaeothamnion wetherbeei SAG_119_79)
ACCAAACGGAAGCATTCCGCTATCCTCCTTCCCTCCCTGCCCCAATTTCC
CTTTGTACGACATCGCCCTAGAAGGTTTAGTTTACACCGTGCTCAGCCAT
TCTCCTTCCAAATGGGGTCCGGAAAGCCCTACAGTGGAAGATGGCAATTT
TGCGCTCTCTTTGGCTTGGCAGCGGTATGCCTCGGCTTGCCTTTGTTCTG
GAATACCACAACCAACGAGCTTTCGACAGAAAGCTGCACTGGCCCTGGAA
TAGGCCATACAATCGGCGACAACGGAGAGGTCCTTCGCTTCACGCACGTT
GACGGGGTGAGAAACCGGCCTGTCTGAACCGGTTCTCGTATTGAGGGCTT
CTTCTGGAGGACGCACTGACACCATCTTAGCGAAGTAATCTGAACCCCAG
CACGACGTTTGGCGGACACCAAAACTTGCCATTTTCCGTTCCTTCCTCTC
CCTCTTCCTTTCGCTCTGTCCGGCTGTCGCCGCCGCTGTTCGCGCCGACT
GGGCCCGCGTGAAACTCGCGCAGGACTCGACGTCGCTGCCGGCGCTGCTG
CGCTCCGTGTGGGACGCCAAGGCTGCGGAGGGCGTCTTCCGCTTCTCCGT
GAAGGACCTGCCGACGCGGCACGCTGAGGGGCCGCGTCTCGGCTGGGCGG
TGGAGCTGCTGGCGATTGTCGGCCGGAGAAAGCCGTTCCCGGACCCGCTC
CCAACTTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10464:51..759-

>mRNA_P-wetherbeei_contig10464.1.1 ID=mRNA_P-wetherbeei_contig10464.1.1|Name=mRNA_P-wetherbeei_contig10464.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig10464:51..759- (Phaeothamnion wetherbeei SAG_119_79)
ACCAAACGGAAGCATTCCGCTATCCTCCTTCCCTCCCTGCCCCAATTTCC
CTTTGTACGACATCGCCCTAGAAGGTTTAGTTTACACCGTGCTCAGCCAT
TCTCCTTCCAAATGGGGTCCGGAAAGCCCTACAGTGGAAGATGGCAATTT
TGCGCTCTCTTTGGCTTGGCAGCGGTATGCCTCGGCTTGCCTTTGTTCTG
GAATACCACAACCAACGAGCTTTCGACAGAAAGCTGCACTGGCCCTGGAA
TAGGCCATACAATCGGCGACAACGGAGAGGTCCTTCGCTTCACGCACGTT
GACGGGGACTCGACGTCGCTGCCGGCGCTGCTGCGCTCCGTGTGGGACGC
CAAGGCTGCGGAGGGCGTCTTCCGCTTCTCCGTGAAGGACCTGCCGACGC
GGCACGCTGAGGGGCCGCGTCTCGGCTGGGCGGTGGAGCTGCTGGCGATT
GTCGGCCGGAGAAAGCCGTTCCCGGACCCGCTCCCAACTTAC
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