mRNA_P-wetherbeei_contig10463.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10463.1.1
Unique NamemRNA_P-wetherbeei_contig10463.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10463.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10463contigP-wetherbeei_contig10463:4..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size639
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.4687455-CDS-P-wetherbeei_contig10463:3..3511683185870.4687455-CDS-P-wetherbeei_contig10463:3..351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10463 4..351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.476395-UTR-P-wetherbeei_contig10463:351..6401683185870.476395-UTR-P-wetherbeei_contig10463:351..640Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10463 352..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10463.1.1prot_P-wetherbeei_contig10463.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10463 4..351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10463.1.1

>prot_P-wetherbeei_contig10463.1.1 ID=prot_P-wetherbeei_contig10463.1.1|Name=mRNA_P-wetherbeei_contig10463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
RRKFSFPPPLFSLHAREGLRFASFSCIFTSFSSKLLTFIFTSFSVFSLPR
AFSAARRCRRRPATHPAKCSEPRRRRISRRSSSRLGCPAHSSFDGRSDSD
SRELQNWTKARDGAI*
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mRNA from alignment at P-wetherbeei_contig10463:4..640+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10463.1.1 ID=mRNA_P-wetherbeei_contig10463.1.1|Name=mRNA_P-wetherbeei_contig10463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=637bp|location=Sequence derived from alignment at P-wetherbeei_contig10463:4..640+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAGAAAGTTTTCGTTCCCCCCCCCCCTGTTCTCGTTACATGCGCGAGA
AGGTCTGCGCTTTGCGTCCTTCTCTTGCATCTTCACCTCCTTTTCCAGCA
AATTGCTGACATTTATCTTCACGTCCTTTTCTGTGTTTTCCCTTCCTCGC
GCATTTTCGGCAGCACGCCGGTGCAGAAGGCGACCTGCTACCCATCCGGC
GAAGTGCTCCGAGCCACGCCGCCGCCGCATAAGTCGTCGGAGCTCAAGCC
GGTTAGGATGCCCCGCCCACTCAAGCTTTGACGGGCGGTCCGATAGCGAT
AGCAGAGAGCTACAAAATTGGACAAAAGCCAGGGACGGCGCGATATGAAC
TTTGGAATGCAACGAAGCGCGGGCAACAAGGAGCTGTTTTCTACGCGACT
CGGACGGATCTGAACTGGATAACTTCCCAAGGGCCGCGCTCGGTCATGCC
CTCCGGGTGCGGGTGCGACGGAGAGGGCGAGTGAGTGAAGCAGGTGTCGT
GTAAAATAGACCAGCGCCGTTTCTATCAGCCGGCTTTTTGCAACGGGGGC
GACAGAGAAGAAAGGGCGATCCTAGCCGCCGGCTTTGTTGCGACGGCGGC
ACCAGGAATTGCCGGGTTGGAGGGAATGAGAGCCGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10463:4..640+

>mRNA_P-wetherbeei_contig10463.1.1 ID=mRNA_P-wetherbeei_contig10463.1.1|Name=mRNA_P-wetherbeei_contig10463.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig10463:4..640+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAGAAAGTTTTCGTTCCCCCCCCCCCTGTTCTCGTTACATGCGCGAGA
AGGTCTGCGCTTTGCGTCCTTCTCTTGCATCTTCACCTCCTTTTCCAGCA
AATTGCTGACATTTATCTTCACGTCCTTTTCTGTGTTTTCCCTTCCTCGC
GCATTTTCGGCAGCACGCCGGTGCAGAAGGCGACCTGCTACCCATCCGGC
GAAGTGCTCCGAGCCACGCCGCCGCCGCATAAGTCGTCGGAGCTCAAGCC
GGTTAGGATGCCCCGCCCACTCAAGCTTTGACGGGCGGTCCGATAGCGAT
AGCAGAGAGCTACAAAATTGGACAAAAGCCAGGGACGGCGCGATATGA
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