mRNA_P-wetherbeei_contig10457.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10457.3.1
Unique NamemRNA_P-wetherbeei_contig10457.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10457.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10457contigP-wetherbeei_contig10457:1044..1632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size218
Hectar predicted targeting categoryother localisation
Exons3
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.2031205-CDS-P-wetherbeei_contig10457:1043..11161683185870.2031205-CDS-P-wetherbeei_contig10457:1043..1116Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10457 1044..1116 +
1683185870.2149737-CDS-P-wetherbeei_contig10457:1282..13541683185870.2149737-CDS-P-wetherbeei_contig10457:1282..1354Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10457 1283..1354 +
1683185870.2269115-CDS-P-wetherbeei_contig10457:1559..16301683185870.2269115-CDS-P-wetherbeei_contig10457:1559..1630Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10457 1560..1630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10457.3.1prot_P-wetherbeei_contig10457.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10457 1044..1630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10457.3.1

>prot_P-wetherbeei_contig10457.3.1 ID=prot_P-wetherbeei_contig10457.3.1|Name=mRNA_P-wetherbeei_contig10457.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
GVLPPEIGNLTALRRLWLPLNYIGGQIPNEIGRLVNLEDLWLAFNRFEGA
IPPGLWSLPNLEVINLTSLKLS
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mRNA from alignment at P-wetherbeei_contig10457:1044..1632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10457.3.1 ID=mRNA_P-wetherbeei_contig10457.3.1|Name=mRNA_P-wetherbeei_contig10457.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=589bp|location=Sequence derived from alignment at P-wetherbeei_contig10457:1044..1632+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGTCCTCCCTCCGGAGATCGGCAATCTGACAGCACTGCGCAGGTTGTG
GCTTCCGTTAAACTACATTGGCGGTGAGTAGCGTGCGGGCGGCTGGGCAA
GGCAGCCGGGGGTCTCTTCTCAACACGCGTGCCCCGCGCTGGCAAACAAG
GGAATTCCTGTTCCACCCTTTTTTTCCTCGCTTGTCTGTCGTGTATTTCC
CAAAATTAATGTTATCGCGGCTCTGTGTGCGCGCCTCAGGTCAAATCCCG
AATGAGATCGGCCGTCTCGTCAATCTCGAGGATCTGTGGCTTGCCTTCAA
TAGGTTTGAAGGTGTGTGCGGCTCTTACTTCTGTGTATTTTGTAGAGTTT
GCCTGTCCGCGTGGAGCTTTTTTGTTCCTTGGCTGCATGTTTGCGAGAAG
AACGGATTACGGCGCGCGGCTTACTTTGAAAGCAGTACTTGTGGCGCCTG
CCTTGTTTGCTTGTTGAGGACGGTAAAGTAATTTCTTCCTGCTCATCCGC
CTGCTTCTCCCGGCAGGGGCGATCCCTCCCGGCTTGTGGAGCCTGCCGAA
TCTGGAAGTCATCAATCTGACTTCCTTAAAGCTCAGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10457:1044..1632+

>mRNA_P-wetherbeei_contig10457.3.1 ID=mRNA_P-wetherbeei_contig10457.3.1|Name=mRNA_P-wetherbeei_contig10457.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig10457:1044..1632+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGTCCTCCCTCCGGAGATCGGCAATCTGACAGCACTGCGCAGGTTGTG
GCTTCCGTTAAACTACATTGGCGGTCAAATCCCGAATGAGATCGGCCGTC
TCGTCAATCTCGAGGATCTGTGGCTTGCCTTCAATAGGTTTGAAGGGGCG
ATCCCTCCCGGCTTGTGGAGCCTGCCGAATCTGGAAGTCATCAATCTGAC
TTCCTTAAAGCTCAGC
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