mRNA_P-wetherbeei_contig10454.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10454.1.1
Unique NamemRNA_P-wetherbeei_contig10454.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10454.1.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.250e-23
Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 1 
Query:   52 ASRVSLRTWRSAGAVADGVALSALLVPGRPRAPWCSGGDPARSGMYPEVFEALGFASATAPDVIRDPLRVEVVLGDFDVTLSRAQYGVVLSALMCNFSEPPTRPPPLFDWQKRAVRPKEAVLRDALAGLLTAQAVVLRAPAVKLRVTEDEPA 507
            AS V++R++RSA  VA+ ++L A +V   P  PWC GGD   SGM+P V+++LGF     P   ++ L + V++ + D +L+R+QY  ++S +M NF EP +  PP+ +W KR     + V RD L G  TAQ+V + A  ++L V+EDE A
Sbjct: 1810 ASGVTIRSYRSASLVAENLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDLTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSEDEEA 1961
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BLAST of mRNA_P-wetherbeei_contig10454.1.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 7.470e-22
Identity = 61/152 (40.13%), Postives = 94/152 (61.84%), Query Frame = 1 
Query:   52 ASRVSLRTWRSAGAVADGVALSALLVPGRPRAPWCSGGDPARSGMYPEVFEALGFASATAPDVIRDPLRVEVVLGDFDVTLSRAQYGVVLSALMCNFSEPPTRPPPLFDWQKRAVRPKEAVLRDALAGLLTAQAVVLRAPAVKLRVTEDEPA 507
            AS V++R++RSA  VA+ ++L A +V   P  PWC GG    SGM+P V+++LGF     P   ++ L V V++ + D +L+R+QY  ++S +M NF EP +  PP+ +W KR     + V RD L G  TAQ+V + A  ++L V+E+E A
Sbjct:  819 ASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGAAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQSVPVYARRLRLTVSENEEA 970
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BLAST of mRNA_P-wetherbeei_contig10454.1.1 vs. uniprot
Match: A0A835ZEP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.240e-7
Identity = 56/191 (29.32%), Postives = 77/191 (40.31%), Query Frame = 1 
Query: 1534 VQVIVEAEAGDLFFALDRKRMAQGSQLSVGARSIAISQPPXXXXXXXXXXXXARGRRVRQFIIAPHAEQRPXXXXXXXXXXXXWSAETGVMXXXXXXAPMAEDQNEAQGFWPCRRDERVGYSPQIWYNQQNAFDFRRCSVVVNDSQLTGHAASLWGAVRFFTEPVFEVQRRQRARAG--LIPERPCNRDVE 2100
            V+VI E  A DLF A+DR     G+ +  GAR+  I++              A   R     + P                      +G        AP                D RV  +PQ+WY QQNA D+RR ++ +  + LT HAA+L   VR+F +PV E++   RA        E P N DVE
Sbjct: 1477 VEVIAEITARDLFLAIDRCAQGAGATILAGARTFDIAEITGGGDGSSSAAALALSLRPLLSALPPR--------------------HSGAAAA----APP---------------DPRVRRAPQVWYEQQNAADYRRIALRLERTALTAHAAALLRVVRYFVDPVHEIRNASRATHPDKWAAENPRNLDVE 1628
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10454.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K463_9PHAE4.250e-2340.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LME4_ECTSI7.470e-2240.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZEP1_9STRA2.240e-729.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10454contigP-wetherbeei_contig10454:50..2337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2102
Hectar predicted targeting categoryother localisation
Exons2
Cds size2100
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185870.0734656-CDS-P-wetherbeei_contig10454:51..2461683185870.0734656-CDS-P-wetherbeei_contig10454:51..246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10454 52..246 -
1683185870.0821471-CDS-P-wetherbeei_contig10454:432..23371683185870.0821471-CDS-P-wetherbeei_contig10454:432..2337Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10454 433..2337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10454.1.1prot_P-wetherbeei_contig10454.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10454 52..2337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10454.1.1

>prot_P-wetherbeei_contig10454.1.1 ID=prot_P-wetherbeei_contig10454.1.1|Name=mRNA_P-wetherbeei_contig10454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=700bp
PRPATAGTPPSVPMLIEASRVSLRTWRSAGAVADGVALSALLVPGRPRAP
WCSGGDPARSGMYPEVFEALGFASATAPDVIRDPLRVEVVLGDFDVTLSR
AQYGVVLSALMCNFSEPPTRPPPLFDWQKRAVRPKEAVLRDALAGLLTAQ
AVVLRAPAVKLRVTEDEPALADYWARGGAAGGGEGDADSAGDSAIYCSDS
DEELSAALFGGGGGGSVEGGGGTGGGGGPGFERMFSWSAGGRQRGRKGLL
ARRGSASLGAGKDDGAVAAGFSRMAANSFGLTSFGLSSSDDGEAEEVEAD
ALSDGELHAADAAAAATARRSRSPGESGAATASQSPPAGNGNCRASGMSP
KLTVQTSASAVAMTAAPAAVAAVAAEADYWGAKQRTPIHVVADKARRSSF
GSDSDSDGRRSPSASPSPSQLALRTLAVEDGAAAAVPVTAFPPTRSTRRD
GASSVEEDSGEDERVVGFVEEIPYAYGRPEERRRAAAGPWLGWGVGDAAA
AIGGAPDPRLAVQVIVEAEAGDLFFALDRKRMAQGSQLSVGARSIAISQP
PEEGGDEGGGGGDARGRRVRQFIIAPHAEQRPPAKAAAPQASSSWSAETG
VMAAAAAAAPMAEDQNEAQGFWPCRRDERVGYSPQIWYNQQNAFDFRRCS
VVVNDSQLTGHAASLWGAVRFFTEPVFEVQRRQRARAGLIPERPCNRDVE
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mRNA from alignment at P-wetherbeei_contig10454:50..2337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10454.1.1 ID=mRNA_P-wetherbeei_contig10454.1.1|Name=mRNA_P-wetherbeei_contig10454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2288bp|location=Sequence derived from alignment at P-wetherbeei_contig10454:50..2337- (Phaeothamnion wetherbeei SAG_119_79)
CCCCGGCCGGCCACCGCCGGCACGCCGCCGTCGGTGCCCATGCTGATCGA
GGCGTCCCGTGTGTCGCTGCGGACGTGGCGCAGCGCCGGCGCCGTAGCGG
ACGGCGTGGCGCTGTCGGCGCTGTTGGTGCCGGGTCGGCCACGGGCGCCC
TGGTGCAGCGGTGGCGACCCGGCCCGGAGCGGCATGTACCCGGAGGTGTT
CGAGGCACTCGGCTTTGCGTCCGCGACGGCTCCCGACGTGATCCGGGACC
CGCTGCGCGTGGAAGTCGTCCTAGGGGACTTTGACGTGACGCTGAGCCGG
GCGCAGTACGGCGTAGTGCTGTCGGCGCTCATGTGCAACTTTTCTGAGCC
GCCGACGCGGCCGCCGCCGCTGTTCGACTGGCAGAAGCGGGCGGTGCGGC
CCAAGGAGGCGGTTCTGCGCGACGCTCTGGCAGGGCTGCTGACGGCACAG
GCGGTAGTGCTGCGGGCGCCGGCGGTCAAGCTCCGCGTCACGGAGGACGA
ACCGGCGCTGGCCGATTACTGGGCGCGCGGCGGCGCCGCCGGTGGCGGCG
AAGGCGACGCAGACAGCGCCGGTGATTCGGCGATCTACTGCTCCGATTCG
GATGAGGAGCTCAGCGCTGCGTTATTCGGCGGCGGCGGCGGCGGCAGCGT
TGAGGGAGGTGGCGGCACTGGTGGCGGCGGAGGGCCGGGCTTCGAGCGCA
TGTTTTCGTGGTCGGCAGGAGGCCGGCAGAGGGGACGCAAGGGTTTGCTT
GCGCGGCGGGGAAGCGCGTCGTTGGGAGCAGGGAAAGACGACGGCGCTGT
GGCAGCGGGCTTTTCGCGCATGGCCGCCAACAGCTTTGGGCTCACCAGCT
TCGGCCTCTCCAGCAGCGATGACGGCGAAGCCGAAGAGGTGGAAGCGGAC
GCGCTGTCAGACGGCGAGCTGCACGCCGCCGACGCCGCCGCCGCCGCCAC
TGCCCGGCGGAGCCGCTCGCCGGGCGAGTCAGGAGCGGCGACGGCATCTC
AGAGCCCGCCGGCCGGGAACGGGAATTGTAGGGCGTCCGGAATGTCACCG
AAGCTGACGGTGCAGACGTCGGCGTCGGCGGTCGCGATGACGGCGGCACC
AGCAGCAGTGGCGGCGGTGGCGGCGGAGGCGGACTACTGGGGCGCGAAGC
AGCGCACGCCGATCCATGTGGTGGCCGACAAGGCGCGGCGCAGCAGCTTC
GGCTCCGACAGCGACAGCGACGGCCGCCGCTCCCCGTCCGCCAGTCCATC
GCCGTCGCAGCTGGCACTCAGGACTCTGGCGGTGGAGGACGGCGCGGCAG
CGGCCGTCCCGGTGACAGCCTTCCCGCCGACGCGGTCGACGAGGCGCGAC
GGTGCAAGTTCAGTTGAGGAGGACAGCGGCGAGGACGAGCGCGTCGTCGG
CTTCGTCGAGGAGATTCCTTACGCGTACGGTCGACCCGAGGAGCGGAGAA
GGGCGGCGGCGGGGCCGTGGCTGGGCTGGGGCGTCGGTGATGCCGCCGCT
GCCATTGGCGGCGCCCCCGATCCGCGGCTGGCGGTGCAAGTTATTGTCGA
AGCGGAGGCCGGGGACCTTTTCTTCGCGCTAGACCGGAAGCGCATGGCGC
AAGGCTCGCAGCTCTCCGTGGGCGCCCGCTCCATCGCCATCTCGCAACCG
CCGGAAGAGGGCGGCGACGAGGGCGGTGGCGGCGGCGATGCCCGGGGGAG
GCGCGTGAGACAGTTCATTATCGCGCCGCATGCCGAACAGCGGCCGCCTG
CTAAGGCTGCGGCGCCGCAGGCTTCTTCGTCGTGGTCGGCAGAGACCGGA
GTGATGGCAGCGGCGGCGGCGGCGGCGCCAATGGCGGAAGACCAGAATGA
GGCGCAGGGCTTCTGGCCGTGCCGACGGGATGAGCGCGTTGGGTATTCGC
CGCAGGTGAGGAAGTCGTGTGGAAAAATGTCACTGATGACGGCCTTGTGC
TTATCCATGAGTTAATTTTCCCTCTCTCCTTTTCGGCAGGGCACGTGATG
GCTTACATATTCTTGCTTCCTTCGTTTTGCCTGCACCACTGCCACGCCCG
CTTGCCTCGCCTACCTGTCTGGCTGCTTGTTACGACCACAGATTTGGTAC
AACCAGCAGAACGCTTTCGACTTTCGGCGCTGCTCGGTGGTGGTCAACGA
CAGCCAGCTCACGGGCCACGCCGCGAGCCTGTGGGGCGCCGTGCGCTTCT
TCACGGAGCCCGTGTTCGAGGTGCAGCGGCGACAGCGGGCGAGGGCAGGA
CTCATCCCGGAGCGGCCCTGTAACAGGGACGTCGAGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10454:50..2337-

>mRNA_P-wetherbeei_contig10454.1.1 ID=mRNA_P-wetherbeei_contig10454.1.1|Name=mRNA_P-wetherbeei_contig10454.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2100bp|location=Sequence derived from alignment at P-wetherbeei_contig10454:50..2337- (Phaeothamnion wetherbeei SAG_119_79)
CCCCGGCCGGCCACCGCCGGCACGCCGCCGTCGGTGCCCATGCTGATCGA
GGCGTCCCGTGTGTCGCTGCGGACGTGGCGCAGCGCCGGCGCCGTAGCGG
ACGGCGTGGCGCTGTCGGCGCTGTTGGTGCCGGGTCGGCCACGGGCGCCC
TGGTGCAGCGGTGGCGACCCGGCCCGGAGCGGCATGTACCCGGAGGTGTT
CGAGGCACTCGGCTTTGCGTCCGCGACGGCTCCCGACGTGATCCGGGACC
CGCTGCGCGTGGAAGTCGTCCTAGGGGACTTTGACGTGACGCTGAGCCGG
GCGCAGTACGGCGTAGTGCTGTCGGCGCTCATGTGCAACTTTTCTGAGCC
GCCGACGCGGCCGCCGCCGCTGTTCGACTGGCAGAAGCGGGCGGTGCGGC
CCAAGGAGGCGGTTCTGCGCGACGCTCTGGCAGGGCTGCTGACGGCACAG
GCGGTAGTGCTGCGGGCGCCGGCGGTCAAGCTCCGCGTCACGGAGGACGA
ACCGGCGCTGGCCGATTACTGGGCGCGCGGCGGCGCCGCCGGTGGCGGCG
AAGGCGACGCAGACAGCGCCGGTGATTCGGCGATCTACTGCTCCGATTCG
GATGAGGAGCTCAGCGCTGCGTTATTCGGCGGCGGCGGCGGCGGCAGCGT
TGAGGGAGGTGGCGGCACTGGTGGCGGCGGAGGGCCGGGCTTCGAGCGCA
TGTTTTCGTGGTCGGCAGGAGGCCGGCAGAGGGGACGCAAGGGTTTGCTT
GCGCGGCGGGGAAGCGCGTCGTTGGGAGCAGGGAAAGACGACGGCGCTGT
GGCAGCGGGCTTTTCGCGCATGGCCGCCAACAGCTTTGGGCTCACCAGCT
TCGGCCTCTCCAGCAGCGATGACGGCGAAGCCGAAGAGGTGGAAGCGGAC
GCGCTGTCAGACGGCGAGCTGCACGCCGCCGACGCCGCCGCCGCCGCCAC
TGCCCGGCGGAGCCGCTCGCCGGGCGAGTCAGGAGCGGCGACGGCATCTC
AGAGCCCGCCGGCCGGGAACGGGAATTGTAGGGCGTCCGGAATGTCACCG
AAGCTGACGGTGCAGACGTCGGCGTCGGCGGTCGCGATGACGGCGGCACC
AGCAGCAGTGGCGGCGGTGGCGGCGGAGGCGGACTACTGGGGCGCGAAGC
AGCGCACGCCGATCCATGTGGTGGCCGACAAGGCGCGGCGCAGCAGCTTC
GGCTCCGACAGCGACAGCGACGGCCGCCGCTCCCCGTCCGCCAGTCCATC
GCCGTCGCAGCTGGCACTCAGGACTCTGGCGGTGGAGGACGGCGCGGCAG
CGGCCGTCCCGGTGACAGCCTTCCCGCCGACGCGGTCGACGAGGCGCGAC
GGTGCAAGTTCAGTTGAGGAGGACAGCGGCGAGGACGAGCGCGTCGTCGG
CTTCGTCGAGGAGATTCCTTACGCGTACGGTCGACCCGAGGAGCGGAGAA
GGGCGGCGGCGGGGCCGTGGCTGGGCTGGGGCGTCGGTGATGCCGCCGCT
GCCATTGGCGGCGCCCCCGATCCGCGGCTGGCGGTGCAAGTTATTGTCGA
AGCGGAGGCCGGGGACCTTTTCTTCGCGCTAGACCGGAAGCGCATGGCGC
AAGGCTCGCAGCTCTCCGTGGGCGCCCGCTCCATCGCCATCTCGCAACCG
CCGGAAGAGGGCGGCGACGAGGGCGGTGGCGGCGGCGATGCCCGGGGGAG
GCGCGTGAGACAGTTCATTATCGCGCCGCATGCCGAACAGCGGCCGCCTG
CTAAGGCTGCGGCGCCGCAGGCTTCTTCGTCGTGGTCGGCAGAGACCGGA
GTGATGGCAGCGGCGGCGGCGGCGGCGCCAATGGCGGAAGACCAGAATGA
GGCGCAGGGCTTCTGGCCGTGCCGACGGGATGAGCGCGTTGGGTATTCGC
CGCAGATTTGGTACAACCAGCAGAACGCTTTCGACTTTCGGCGCTGCTCG
GTGGTGGTCAACGACAGCCAGCTCACGGGCCACGCCGCGAGCCTGTGGGG
CGCCGTGCGCTTCTTCACGGAGCCCGTGTTCGAGGTGCAGCGGCGACAGC
GGGCGAGGGCAGGACTCATCCCGGAGCGGCCCTGTAACAGGGACGTCGAG
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