mRNA_P-wetherbeei_contig10451.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10451.1.1
Unique NamemRNA_P-wetherbeei_contig10451.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10451.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10451contigP-wetherbeei_contig10451:136..2135 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2000
Hectar predicted targeting categoryother localisation
Exons1
Cds size1341
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.9661698-UTR-P-wetherbeei_contig10451:135..7621683185869.9661698-UTR-P-wetherbeei_contig10451:135..762Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10451 136..762 -
1683185869.981123-UTR-P-wetherbeei_contig10451:2103..21351683185869.981123-UTR-P-wetherbeei_contig10451:2103..2135Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10451 2104..2135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.973549-CDS-P-wetherbeei_contig10451:762..21031683185869.973549-CDS-P-wetherbeei_contig10451:762..2103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10451 763..2103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10451.1.1prot_P-wetherbeei_contig10451.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10451 763..2103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10451.1.1

>prot_P-wetherbeei_contig10451.1.1 ID=prot_P-wetherbeei_contig10451.1.1|Name=mRNA_P-wetherbeei_contig10451.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=447bp
MVTPSRTLERLLLTATRYNKYMPLPAASPALDLTADMRQAVYSMMGMAGA
VDEWRQRGHFYRFVRSDAASAATALSATAALSAASSSGPLQPQLTRPVSA
RKEAWQASAAELAEMTAAARHRVLYLELGIASAADDEWLDGLDTLMRRLA
DLASGNDDGGGGGGSDDEGFGGLGSLKTAMVATRLWAVRLCTAWCRAANI
RKSGGSSGYYSSNHGGDGGDGDNECIPMLQDYELCAFVSMTALAWVQATR
GRCFDVPLNAACTRPDGSPLVWQKMSGRVLQLAGQAVQVKVDVCLLGQTI
LLPVWKRQPTPPPTPLAAAARRAGRDSSDAAVPSEWDQDATEKQEGLGIQ
LSFKALDAATLDWPLFFKLFGVGQAHHVDVSTAAAAVPGRGATGSGGGGG
GCSGAVLQPSAAVQAAVLRLLGGDTRLAAAVADLCRHVAKDCSQAS*
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mRNA from alignment at P-wetherbeei_contig10451:136..2135-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10451.1.1 ID=mRNA_P-wetherbeei_contig10451.1.1|Name=mRNA_P-wetherbeei_contig10451.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2000bp|location=Sequence derived from alignment at P-wetherbeei_contig10451:136..2135- (Phaeothamnion wetherbeei SAG_119_79)
CATGCAGCCCCGAAGACTCGGGGCACCACGAAATGGTCACGCCGAGCCGC
ACCCTCGAGCGCCTCTTGCTGACGGCGACCCGGTACAACAAGTACATGCC
GCTGCCTGCGGCATCGCCGGCGCTCGACCTGACGGCCGATATGCGACAGG
CGGTCTACTCGATGATGGGCATGGCCGGCGCAGTCGATGAATGGCGACAG
CGCGGCCACTTTTATCGCTTCGTTCGGTCTGACGCCGCTTCAGCCGCGAC
GGCGCTCTCGGCGACGGCGGCGCTCTCGGCGGCGTCCTCTTCAGGGCCGT
TGCAGCCACAGCTAACTCGGCCGGTGTCTGCGCGTAAGGAAGCATGGCAG
GCCTCCGCTGCCGAGCTGGCGGAAATGACCGCAGCGGCGCGGCACCGCGT
GCTCTATTTGGAGCTCGGCATCGCCAGCGCCGCGGACGACGAGTGGCTTG
ACGGGCTAGACACGCTGATGCGCCGGCTTGCCGACCTCGCAAGCGGCAAC
GACGACGGCGGCGGCGGTGGCGGCAGTGACGATGAGGGATTTGGCGGCCT
TGGCTCCCTTAAGACCGCCATGGTCGCAACCCGCCTTTGGGCCGTGCGCC
TTTGTACCGCGTGGTGCCGCGCTGCAAATATTCGCAAAAGCGGTGGTAGC
AGTGGGTATTACAGCAGCAATCACGGCGGCGACGGCGGCGACGGTGACAA
TGAGTGCATCCCGATGCTCCAGGACTATGAGCTCTGCGCCTTTGTGTCCA
TGACCGCGCTAGCCTGGGTGCAGGCCACTCGCGGCCGCTGCTTCGACGTC
CCCTTGAACGCCGCCTGTACGCGGCCCGATGGCAGCCCGCTTGTATGGCA
GAAGATGAGCGGGCGGGTGCTCCAGCTGGCTGGGCAGGCAGTGCAGGTGA
AAGTGGACGTCTGTCTCCTCGGCCAGACCATCCTTCTGCCCGTCTGGAAG
CGGCAGCCAACGCCTCCGCCGACGCCCTTGGCGGCCGCGGCGAGAAGAGC
GGGCCGCGACAGCTCAGACGCGGCGGTACCGTCCGAATGGGACCAAGATG
CAACAGAGAAACAAGAGGGCCTCGGCATCCAGCTGAGCTTCAAGGCACTG
GATGCGGCGACGCTGGACTGGCCCCTGTTTTTCAAACTTTTTGGGGTGGG
CCAGGCGCACCATGTCGACGTCAGCACCGCGGCAGCGGCAGTGCCGGGCC
GTGGCGCCACTGGCAGCGGCGGCGGCGGCGGCGGCTGCTCCGGCGCGGTA
TTGCAGCCGTCCGCCGCCGTCCAAGCCGCCGTGCTGCGACTGCTCGGAGG
CGACACGCGCCTGGCGGCCGCCGTCGCGGACCTGTGCCGCCATGTTGCAA
AGGATTGCAGTCAGGCTAGCTGAAAGAACAGAAATAGCCACTCGTACAAA
ACATCAGAGCGTTGAGGAACACTCGCGGCTTCGGCGTGTGTGAGCAGGAG
AAGAGGGGATTGTGTGGGTGTGGACATCATTTGATCTGTGTGCGCGAGAG
AGCCGCGCGCCAGCTTTTGGCTGTACCTGGCTGTAGTAGCTAACTGTGCG
AGGACAAGCAAGCGAAGCAGCCGGTTGCCTTCTGGGCATCTTTCAACCCA
GCTGTCCCCGTCATGGTCCGTCATCTCCCTGCCTTCGCTCGCTCTCTCTT
GCGGGCCTGGCTGTCCACTGGTGTCCCCAGACCGAAGGCAGGCAGCCCGG
GTAAGGCTATGCGTTGGTGCTACTAGGCGCAGGTATAATTGGTCAACCGA
CCCCGCCATCCACTCCGCCGCCATCGCTGCCTCCAACCCCCAAGCAATCG
CTCCGATGCCCGTGCGTAGCACCGCCGCCGCCCGCAGTGCTTCAGAGGAA
GCGGCCGAGAGCGTCGACTGGGTGGTGCGTGGTGCAAATGATGGGGAAGA
TTGACCTCGCCGGCACGATGGTCAATCGAAACAGGAGAAAGAGCATAATG
ATGATTAAAAAGAGATGAGGATCTCCCGGTAAAACAATATTTTAAGAACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10451:136..2135-

>mRNA_P-wetherbeei_contig10451.1.1 ID=mRNA_P-wetherbeei_contig10451.1.1|Name=mRNA_P-wetherbeei_contig10451.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1341bp|location=Sequence derived from alignment at P-wetherbeei_contig10451:136..2135- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCACGCCGAGCCGCACCCTCGAGCGCCTCTTGCTGACGGCGACCCG
GTACAACAAGTACATGCCGCTGCCTGCGGCATCGCCGGCGCTCGACCTGA
CGGCCGATATGCGACAGGCGGTCTACTCGATGATGGGCATGGCCGGCGCA
GTCGATGAATGGCGACAGCGCGGCCACTTTTATCGCTTCGTTCGGTCTGA
CGCCGCTTCAGCCGCGACGGCGCTCTCGGCGACGGCGGCGCTCTCGGCGG
CGTCCTCTTCAGGGCCGTTGCAGCCACAGCTAACTCGGCCGGTGTCTGCG
CGTAAGGAAGCATGGCAGGCCTCCGCTGCCGAGCTGGCGGAAATGACCGC
AGCGGCGCGGCACCGCGTGCTCTATTTGGAGCTCGGCATCGCCAGCGCCG
CGGACGACGAGTGGCTTGACGGGCTAGACACGCTGATGCGCCGGCTTGCC
GACCTCGCAAGCGGCAACGACGACGGCGGCGGCGGTGGCGGCAGTGACGA
TGAGGGATTTGGCGGCCTTGGCTCCCTTAAGACCGCCATGGTCGCAACCC
GCCTTTGGGCCGTGCGCCTTTGTACCGCGTGGTGCCGCGCTGCAAATATT
CGCAAAAGCGGTGGTAGCAGTGGGTATTACAGCAGCAATCACGGCGGCGA
CGGCGGCGACGGTGACAATGAGTGCATCCCGATGCTCCAGGACTATGAGC
TCTGCGCCTTTGTGTCCATGACCGCGCTAGCCTGGGTGCAGGCCACTCGC
GGCCGCTGCTTCGACGTCCCCTTGAACGCCGCCTGTACGCGGCCCGATGG
CAGCCCGCTTGTATGGCAGAAGATGAGCGGGCGGGTGCTCCAGCTGGCTG
GGCAGGCAGTGCAGGTGAAAGTGGACGTCTGTCTCCTCGGCCAGACCATC
CTTCTGCCCGTCTGGAAGCGGCAGCCAACGCCTCCGCCGACGCCCTTGGC
GGCCGCGGCGAGAAGAGCGGGCCGCGACAGCTCAGACGCGGCGGTACCGT
CCGAATGGGACCAAGATGCAACAGAGAAACAAGAGGGCCTCGGCATCCAG
CTGAGCTTCAAGGCACTGGATGCGGCGACGCTGGACTGGCCCCTGTTTTT
CAAACTTTTTGGGGTGGGCCAGGCGCACCATGTCGACGTCAGCACCGCGG
CAGCGGCAGTGCCGGGCCGTGGCGCCACTGGCAGCGGCGGCGGCGGCGGC
GGCTGCTCCGGCGCGGTATTGCAGCCGTCCGCCGCCGTCCAAGCCGCCGT
GCTGCGACTGCTCGGAGGCGACACGCGCCTGGCGGCCGCCGTCGCGGACC
TGTGCCGCCATGTTGCAAAGGATTGCAGTCAGGCTAGCTGA
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