mRNA_P-wetherbeei_contig10444.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10444.2.1
Unique NamemRNA_P-wetherbeei_contig10444.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 5.030e-48
Identity = 143/324 (44.14%), Postives = 172/324 (53.09%), Query Frame = 1
Query:  271 ESDEEDSTKHLNFLLDGLEEPALISVLQRTPALTQSVSRLLPFLTYGDRGAARTLAAKFVQVLDWEAVASAEVASLAPDSDEAXXXXXXXXXXXXXXXXXXXXXXXXXCGTDAANIPAAGLRRRCFAEAAEGLGGDRTSATVRDCLLETGFLAKTAAFVLRDAPGHASGQPPQPAAATGAAAGDTAFSAPTAXXXXXXXXXXXLATLAAAGRVTEEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            E  E +STKH++FL + LEEPAL+ VL RTPAL Q+VSRLLPFLTYG + AA  LA KF +V+ W+ V + ++   A                                  D      A LRRRC+  AAEGLG  R++  +R CLLE GFL     F+L +AP                       S P     XXXXXXXX       G    +W+ YF R  LPAAL+ L GLCRGH  +Q  L   GLL  LH  E TS SG+VGLLAETLLEAVA+ N    AE+  LR  TR AKR  AQ +RERAL+AMGV+    G
Sbjct: 7764 EQRETESTKHVSFLFEALEEPALMDVLGRTPALAQAVSRLLPFLTYGRKAAAGLLAEKFAEVVRWDDVVTDDLQERAAGGKAG----------------------------DGPPTSPAQLRRRCYMAAAEGLGLGRSANVIRACLLERGFLETAVTFLLLEAP-----------------------SVPPHLSAXXXXXXXXXXXXXXXGG---DWKAYFERAGLPAALKMLAGLCRGHAGAQSFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAVAQDNALTGAEITRLRDETRAAKRKLAQARRERALKAMGVRATGAG 8033          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A835Z9Y3_9STRA (E3 ubiquitin-protein ligase UBR4-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.000e-32
Identity = 123/331 (37.16%), Postives = 163/331 (49.24%), Query Frame = 1
Query:  265 SAESDEEDS-TKHLNFLLDGLEEP---ALISVLQRTPALTQSVSRLLPFLTYGDRGAARTLAAKFVQVLDWEAVASAEVASLAPDSDEAXXXXXXXXXXXXXXXXXXXXXXXXXCGTDAANIPAAG-LRRRCFAEAAEGLGGDRTSATVRDCLLETGFLAKTAAFVLRDAPGHASGQPPQPAAATGAAAGDTAFSAPTAXXXXXXXXXXXLATLAAAGRVTEEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNE----PLAAE---LAALRARTREAKRLRAQQQRERALRAMG 1221
            +AE DE++S  +HL+FLL  L E    AL+  L   PAL  SVSR +PFLTYG   AAR LA + VQV+DWEAVA  E A  A ++ +                                  P+A  +RR+CF  A + +G D +   VR  LL+ GF+A TAAFV++  P   SG+            GD                               EW  Y++RPAL  A++ L+GLC+GH  SQ+ L   G+L  LH A + + SG VGLLAE LL+ VA   E    P AA    + A+R  ++ AKR  AQ QR +AL+AMG
Sbjct: 5707 AAEGDEDESGAQHLHFLLTALLEDGEGALVMALLSKPALAVSVSRTMPFLTYGRTAAARMLAERLVQVVDWEAVAEEESAIRAAENAQPP------------------------------RAPSAQEVRRQCFLGALDMMGAD-SGRLVRHSLLQAGFVASTAAFVMQGVPDDKSGR------------GD-------------------------------EWAAYYKRPALERAIKTLSGLCKGHTPSQQVLLEQGVLAALHIAASNASSGSVGLLAEALLDEVASNAECTTGPPAAPAEAVKAMREASKAAKREMAQLQRAKALQAMG 5963          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: D8LLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 9.100e-21
Identity = 103/329 (31.31%), Postives = 118/329 (35.87%), Query Frame = 1
Query:  271 ESDEEDSTKHLNFLLDGLEEPALISVLQRTPALTQSVSRLLPFLTYGDRGAARTLAAKFVQVLDWEAVASAEVASLAPDSDEAXXXXXXXXXXXXXXXXXXXXXXXXXCGTDAANIPAAGLRRRCFAEAAEGLGGDRTSATVRDCLLETGFLAKTAAFVLRDAPGHASGQPPQPAAATGAAAGDTAFSAPTAXXXXXXXXXXXLATLAAAGRVTEEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPGIMSVL 1257
            E  E +STKH++FL + LEEPALI VL RTPAL Q+VSRLLPFLTYG + AA  LA KF                                                                                                                                                              E YF R  LPAAL+ L GLCRGH  +Q  L   GLL  LH  E TS SG+VGLLAETLLEA A+ N    AE+  LR  TR AKR  AQ +RERAL+AMGV+    G  S +
Sbjct:   39 EQRETESTKHVSFLFEALEEPALIDVLGRTPALAQAVSRLLPFLTYGRKAAAGLLAEKFA-------------------------------------------------------------------------------------------------------------------------------------------------------------EAYFERAGLPAALKMLAGLCRGHAGAQGFLAERGLLERLHWMEGTSTSGEVGLLAETLLEAAAQDNALTGAEVTRLREETRAAKRKLAQARRERALKAMGVRAAGTGKSSAV 210          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A7S4R1Y5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R1Y5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.380e-10
Identity = 89/331 (26.89%), Postives = 134/331 (40.48%), Query Frame = 1
Query:  331 PALISVLQRT---PALTQSVSRLLPFLTYGDRGAARTLAAKFVQVLDWEAVASAEVASLAPDSDEAXXXXXXXXXXXXXXXXXXXXXXXXXCGTDAANIPAAGLRRRCFAEAAEGLGGDRTSATVRDCLLETGFLAKTAAFVLRDAPGHASGQPPQPAAATGAAAGDTAFSAPTAXXXXXXXXXXXLATLAAAGRVTEEWEEYFRRPALPAALRALTGLCRGHRSSQEAL-----------------WRGGLLPVLHRAETTSVSGQ-------VGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            P ++S LQ T   P L + +++LLPFLTYG    +  LA+KF++ +  +A+  A+  +L   S                                        +    F E+A  L       T+R+ L+  GF+ +  AFVL+DAP     QPP  ++A  A   D                               +W +YF RP L  A R L GLC  H  +Q  +                     LL   H  E+TS +         +GLL+ETLL+A+ E N+ + +++  +R +TR  KR  A+++R RAL  M    PV G
Sbjct:  678 PLVLSSLQTTSLSPPLRKIIAKLLPFLTYGQVDQSSELASKFIEYVSIDALTDAQSGTLNGCSS---------------------------------------MLMETFVESAIHLPAVNVCDTLRNELIRQGFVDRVKAFVLKDAPT----QPPPWSSALFAKNHDQELPDDEKKIKRELYET--------------QWRDYFNRPGLHTAFRILIGLCTNHTPTQSFIADVDETVPDPTAKDNSNTMASLLQTCHWIESTSDNNASSISMKGLGLLSETLLDALRENNDMVTSKIDTIRKKTRNRKREIAEERRSRALVGMTSFGPVAG 951          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A7J7KS30_BUGNE (Ubr4 n=2 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KS30_BUGNE)

HSP 1 Score: 65.9 bits (159), Expect = 9.140e-8
Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  913 EEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            ++W+E+  RP LP  LR L G+C GH  SQ  +    ++ +LH+ E  S  GQ+G LAE L+E + + N+ +  ++  +RA+T+  K+  A   RE+ L ++G+K    G
Sbjct:   63 DDWKEFVSRPVLPYVLRLLNGMCSGHAVSQVKVGEA-MIAILHKLEHMSSHGQIGSLAENLMETLCQ-NDSVKKQIQQIRAQTKAEKKRLAMAVREKHLSSIGMKTNKKG 170          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A131XW91_IXORI (Putative e3 ubiquitin-protein ligase ubr4 isoform x9 (Fragment) n=4 Tax=Ixodes ricinus TaxID=34613 RepID=A0A131XW91_IXORI)

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-7
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  910 TEEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            +E W+E+  +PAL   LR LTGL RGH ++Q  L     +P++HR E  S    VG LAE L+EA+ E N  +A ++  +R +TR+ K+  A   RE+ L  +G++    G
Sbjct: 3765 SENWKEFTSKPALKYVLRILTGLSRGHETTQ-LLVSAECIPIIHRLEQVSSDEHVGSLAENLMEALKE-NPNVAQKIEEVRKQTRDEKKRLAMAMREKQLGELGMRTNEKG 3873          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A6P7V1L2_IXOSC (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR4 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7V1L2_IXOSC)

HSP 1 Score: 65.9 bits (159), Expect = 1.620e-7
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  910 TEEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            +E W+E+  +PAL   LR LTGL RGH ++Q  L     +P++HR E  S    VG LAE L+EA+ E N  +A ++  +R +TR+ K+  A   RE+ L  +G++    G
Sbjct: 4887 SENWKEFTSKPALKYVLRILTGLSRGHETTQ-LLVSAECIPIIHRLEQVSSDEHVGSLAENLMEALKE-NPNVAQKIEEVRKQTRDEKKRLAMAMREKQLGELGMRTNEKG 4995          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A7S2LBI9_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LBI9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.420e-7
Identity = 90/345 (26.09%), Postives = 139/345 (40.29%), Query Frame = 1
Query:  265 SAESDEEDSTKHLNFLLDGLEEPALISVLQRTPALTQSVSRLLPFLTYGDRGAARTLAAKFVQVLDWEAVASAEVASLAPDSDEAXXXXXXXXXXXXXXXXXXXXXXXXXCGTDAANIPAAGLRRRCFAEAAEGLGGDRTSATVRDCLLETGFLAKTAAFVLRDAPGHASGQPPQPAAATGAAAGDTAFSAPTAXXXXXXXXXXXLATLAAAGRVTEEWEEYF-RRPALPAALRALTGLCRGHRSSQEALWR-GGLLPVLHRAETTSVSG-----------------QVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            +AE  E+ ST  +  LL+ L E    ++   T  L + ++ LLPFLTYG + +++ LA +FV  + +  +A                                             N   + +    F +    L        +R  LL  GF   TA F+++DAP      PP   A   +  G                      + A    + E+W  Y+ R P L  ALR L GLC  H S+Q AL    G + + H  E+TS+S                  ++GL+AETLL+A+ EGNE   +++ A R  T++ K+  A+++R RAL  M +     G
Sbjct:  564 AAEDAEDTST--VQVLLESLTESESTTL---TAPLRKIIADLLPFLTYGQKSSSKALAEQFVAHIQFPRLAY------------------------------------------TLNGGNSNIVMDTFVQTLLTLPPVVVCNELRAQLLSLGFTGSTAQFIMQDAPRL---PPPWSPALNCSTIG-----------------AKRKRSKADTEALEEQWRAYYSREPGLLMALRMLIGLCTKHGSTQTALVNCDGFVQLCHWMESTSISAANDTSAAASSSSGETRNELGLVAETLLDALQEGNEYCKSKIKAARKATKDRKKELAEERRSRALVGMNIAALTSG 841          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A6P7W359_IXOSC (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR4-like n=2 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7W359_IXOSC)

HSP 1 Score: 64.7 bits (156), Expect = 2.820e-7
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  910 TEEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            +E W+E+  +PAL   LR LTGL RGH ++Q  L     +P++HR E  S    VG LAE L+EA+ E N  +A +   +R +TR+ K+  A   RE+ L  +G++    G
Sbjct:  411 SENWKEFTSKPALKYVLRILTGLSRGHETTQ-LLVSAECIPIIHRLEQVSSDEHVGSLAENLMEALKE-NPNVAQKTEEVRKQTRDEKKRLAMAMREKQLGELGMRTNEKG 519          
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Match: A0A1Z5L7M9_ORNMO (E3_UbLigase_R4 domain-containing protein (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L7M9_ORNMO)

HSP 1 Score: 64.3 bits (155), Expect = 3.550e-7
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1
Query:  910 TEEWEEYFRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGLLAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKVPVPG 1242
            TE W+E+  +PAL   LR LTGL RGH ++Q  L     +P++HR E  S    VG LAE L+EA+ E +  +A ++  +R +TR+ K+  A   R++ L  +G++    G
Sbjct:  461 TENWKEFTSKPALKYVLRILTGLSRGHETTQ-LLVSAECVPIIHRLEQVSSDEHVGSLAENLMEALKE-HPDVAQKIEEVRKQTRDEKKRLAMAMRQKQLGQLGMRTNEKG 569          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10444.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE5.030e-4844.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z9Y3_9STRA1.000e-3237.16E3 ubiquitin-protein ligase UBR4-domain-containing... [more]
D8LLX1_ECTSI9.100e-2131.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4R1Y5_9STRA1.380e-1026.89Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7J7KS30_BUGNE9.140e-835.45Ubr4 n=2 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
A0A131XW91_IXORI1.600e-738.74Putative e3 ubiquitin-protein ligase ubr4 isoform ... [more]
A0A6P7V1L2_IXOSC1.620e-738.74LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase U... [more]
A0A7S2LBI9_9STRA2.420e-726.09Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A6P7W359_IXOSC2.820e-738.74LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase U... [more]
A0A1Z5L7M9_ORNMO3.550e-737.84E3_UbLigase_R4 domain-containing protein (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10444contigP-wetherbeei_contig10444:734..2224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLX1
PFAMsE3_UbLigase_R4,ZZ,zf-UBR
Model size1493
Max annot lvl2759|Eukaryota
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.35e-21
EggNOG OGsKOG1776@1|root,KOG1776@2759|Eukaryota
EC2.3.2.27
Descriptionperineurial glial growth
Cds size1461
COG categoryS
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.6508594-UTR-P-wetherbeei_contig10444:733..7631683185869.6508594-UTR-P-wetherbeei_contig10444:733..763Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10444 734..763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.6612496-CDS-P-wetherbeei_contig10444:763..22241683185869.6612496-CDS-P-wetherbeei_contig10444:763..2224Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10444 764..2224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10444.2.1prot_P-wetherbeei_contig10444.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10444 764..2224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10444.2.1

>prot_P-wetherbeei_contig10444.2.1 ID=prot_P-wetherbeei_contig10444.2.1|Name=mRNA_P-wetherbeei_contig10444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=487bp
MIETLVADVAAMAQSSSMQGDVGSAGAGAAAAGGTDATPVAADDGGVDGG
GSEAGGDGGGSSEDAGDAGDDDSGGRAGSAESDEEDSTKHLNFLLDGLEE
PALISVLQRTPALTQSVSRLLPFLTYGDRGAARTLAAKFVQVLDWEAVAS
AEVASLAPDSDEAAAVAAAAAAADAMDEDGGGNSGGGGCGTDAANIPAAG
LRRRCFAEAAEGLGGDRTSATVRDCLLETGFLAKTAAFVLRDAPGHASGQ
PPQPAAATGAAAGDTAFSAPTAAAPAAAAPAAALATLAAAGRVTEEWEEY
FRRPALPAALRALTGLCRGHRSSQEALWRGGLLPVLHRAETTSVSGQVGL
LAETLLEAVAEGNEPLAAELAALRARTREAKRLRAQQQRERALRAMGVKV
PVPGIMSVLGGGGSNGGGDGLEPAAGGGGANGGAAAAAAAGLAGMDVDPA
DDDAGDMPPLSLPSPAQSAPAAPSAMTPAAPSGRAAS
back to top

mRNA from alignment at P-wetherbeei_contig10444:734..2224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10444.2.1 ID=mRNA_P-wetherbeei_contig10444.2.1|Name=mRNA_P-wetherbeei_contig10444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1491bp|location=Sequence derived from alignment at P-wetherbeei_contig10444:734..2224+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCAGCCAGTGCTGGACAACCTGCTGGGCATGATTGAGACCCTCGTGGC CGACGTAGCCGCCATGGCGCAGAGCAGTTCGATGCAGGGTGACGTGGGCT CCGCAGGAGCGGGAGCGGCAGCGGCTGGCGGGACTGATGCCACTCCTGTC GCTGCTGACGACGGCGGCGTGGATGGCGGAGGCAGCGAAGCCGGTGGCGA CGGTGGCGGCAGTAGCGAAGATGCCGGCGACGCTGGCGACGATGACAGCG GCGGCCGCGCCGGGAGCGCCGAGAGCGACGAGGAGGATAGCACGAAGCAC CTCAACTTCCTGCTGGACGGCCTGGAGGAGCCGGCGCTCATCTCCGTGCT GCAGCGGACGCCGGCCCTCACGCAGTCCGTGTCGCGGCTGCTGCCGTTCC TAACATACGGCGACCGCGGCGCCGCGCGCACGCTGGCCGCAAAGTTCGTG CAGGTGCTGGACTGGGAGGCAGTGGCGTCGGCGGAGGTTGCGTCACTGGC GCCGGACAGCGACGAAGCGGCGGCGGTCGCGGCGGCGGCGGCGGCGGCCG ACGCGATGGACGAAGACGGCGGCGGTAATAGCGGCGGCGGCGGCTGCGGC ACGGACGCGGCCAATATCCCCGCCGCCGGGTTGCGGAGGCGGTGCTTCGC CGAGGCGGCGGAAGGGCTGGGCGGCGACCGCACCAGCGCTACTGTGCGCG ACTGCCTGCTGGAGACGGGCTTCCTCGCGAAGACGGCGGCATTTGTGCTG CGCGACGCCCCCGGACATGCTTCCGGGCAGCCGCCGCAGCCGGCTGCCGC CACCGGAGCAGCGGCAGGCGACACCGCGTTTTCCGCTCCAACGGCGGCGG CTCCCGCGGCGGCGGCTCCGGCGGCGGCTCTGGCAACTCTGGCAGCGGCG GGCCGTGTGACGGAAGAGTGGGAGGAGTACTTCCGGCGGCCGGCACTGCC GGCGGCGCTGCGCGCGCTGACAGGGCTCTGCCGCGGCCACCGCTCGTCGC AGGAAGCGCTTTGGCGGGGCGGCCTGCTGCCGGTCTTGCATCGGGCCGAG ACGACGTCCGTCTCGGGCCAGGTTGGGCTCCTGGCGGAGACGCTGCTTGA GGCGGTGGCGGAGGGCAACGAGCCGCTGGCGGCGGAGCTGGCAGCGCTGC GCGCGCGCACGCGCGAGGCGAAGCGGCTGCGCGCGCAGCAGCAGCGCGAA CGGGCGCTGCGGGCCATGGGTGTCAAAGTTCCCGTGCCAGGGATCATGAG CGTCCTCGGCGGGGGCGGCAGCAATGGTGGAGGCGATGGACTTGAGCCTG CCGCCGGCGGCGGCGGCGCGAACGGCGGAGCGGCAGCGGCGGCAGCGGCA GGCTTGGCGGGAATGGACGTGGATCCGGCGGACGACGACGCCGGGGACAT GCCACCCCTGTCGCTCCCGAGTCCTGCGCAGAGCGCGCCGGCCGCGCCGT CGGCGATGACGCCCGCCGCCCCGAGCGGCCGCGCTGCTTCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10444:734..2224+

>mRNA_P-wetherbeei_contig10444.2.1 ID=mRNA_P-wetherbeei_contig10444.2.1|Name=mRNA_P-wetherbeei_contig10444.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1461bp|location=Sequence derived from alignment at P-wetherbeei_contig10444:734..2224+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGAGACCCTCGTGGCCGACGTAGCCGCCATGGCGCAGAGCAGTTC
GATGCAGGGTGACGTGGGCTCCGCAGGAGCGGGAGCGGCAGCGGCTGGCG
GGACTGATGCCACTCCTGTCGCTGCTGACGACGGCGGCGTGGATGGCGGA
GGCAGCGAAGCCGGTGGCGACGGTGGCGGCAGTAGCGAAGATGCCGGCGA
CGCTGGCGACGATGACAGCGGCGGCCGCGCCGGGAGCGCCGAGAGCGACG
AGGAGGATAGCACGAAGCACCTCAACTTCCTGCTGGACGGCCTGGAGGAG
CCGGCGCTCATCTCCGTGCTGCAGCGGACGCCGGCCCTCACGCAGTCCGT
GTCGCGGCTGCTGCCGTTCCTAACATACGGCGACCGCGGCGCCGCGCGCA
CGCTGGCCGCAAAGTTCGTGCAGGTGCTGGACTGGGAGGCAGTGGCGTCG
GCGGAGGTTGCGTCACTGGCGCCGGACAGCGACGAAGCGGCGGCGGTCGC
GGCGGCGGCGGCGGCGGCCGACGCGATGGACGAAGACGGCGGCGGTAATA
GCGGCGGCGGCGGCTGCGGCACGGACGCGGCCAATATCCCCGCCGCCGGG
TTGCGGAGGCGGTGCTTCGCCGAGGCGGCGGAAGGGCTGGGCGGCGACCG
CACCAGCGCTACTGTGCGCGACTGCCTGCTGGAGACGGGCTTCCTCGCGA
AGACGGCGGCATTTGTGCTGCGCGACGCCCCCGGACATGCTTCCGGGCAG
CCGCCGCAGCCGGCTGCCGCCACCGGAGCAGCGGCAGGCGACACCGCGTT
TTCCGCTCCAACGGCGGCGGCTCCCGCGGCGGCGGCTCCGGCGGCGGCTC
TGGCAACTCTGGCAGCGGCGGGCCGTGTGACGGAAGAGTGGGAGGAGTAC
TTCCGGCGGCCGGCACTGCCGGCGGCGCTGCGCGCGCTGACAGGGCTCTG
CCGCGGCCACCGCTCGTCGCAGGAAGCGCTTTGGCGGGGCGGCCTGCTGC
CGGTCTTGCATCGGGCCGAGACGACGTCCGTCTCGGGCCAGGTTGGGCTC
CTGGCGGAGACGCTGCTTGAGGCGGTGGCGGAGGGCAACGAGCCGCTGGC
GGCGGAGCTGGCAGCGCTGCGCGCGCGCACGCGCGAGGCGAAGCGGCTGC
GCGCGCAGCAGCAGCGCGAACGGGCGCTGCGGGCCATGGGTGTCAAAGTT
CCCGTGCCAGGGATCATGAGCGTCCTCGGCGGGGGCGGCAGCAATGGTGG
AGGCGATGGACTTGAGCCTGCCGCCGGCGGCGGCGGCGCGAACGGCGGAG
CGGCAGCGGCGGCAGCGGCAGGCTTGGCGGGAATGGACGTGGATCCGGCG
GACGACGACGCCGGGGACATGCCACCCCTGTCGCTCCCGAGTCCTGCGCA
GAGCGCGCCGGCCGCGCCGTCGGCGATGACGCCCGCCGCCCCGAGCGGCC
GCGCTGCTTCC
back to top