mRNA_P-wetherbeei_contig10442.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10442.1.1
Unique NamemRNA_P-wetherbeei_contig10442.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig10442.1.1 vs. uniprot
Match: A0A0S1UKN2_9ACTN (FHA domain-containing protein n=3 Tax=Streptomyces TaxID=1883 RepID=A0A0S1UKN2_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 1.590e-5
Identity = 50/144 (34.72%), Postives = 65/144 (45.14%), Query Frame = 1 
Query:    1 SGPDTGTTGTIEGGGIALVGRAADADLRCDDPEMSARHALLTVGLDGGLRAVALAAAAVRVDDVFAEGE------VLVTDGAAIELGSSTLRCRRSTDPSTRPASAPIDVIGGRVHRPPRALSPAEPAIVDTAGPPPSPTPRHG 414
            SGPD G    + GG  A VGRA DAD+  DDP++S  H  +TVG DG +    L A     +    +GE      V +  GA + +G S LR      P+  PASA  +   GR+        P  P       PP +P P  G
Sbjct:  102 SGPDAGGVHLLHGG-RAGVGRAEDADIALDDPDVSRAHCAVTVGADGRV----LVADLDSTNGTTVDGEPVGREPVRLAPGALLRIGESGLRLADEPPPAV-PASADGE---GRLRVATPDAGPGVPFAPAEQAPPSAPAPDAG 236
[Close]
BLAST of mRNA_P-wetherbeei_contig10442.1.1 vs. uniprot
Match: A0A3N6FB63_9ACTN (ESX-1 secretion system protein EccCa1 n=105 Tax=Streptomyces TaxID=1883 RepID=A0A3N6FB63_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 2.100e-5
Identity = 50/144 (34.72%), Postives = 65/144 (45.14%), Query Frame = 1 
Query:    1 SGPDTGTTGTIEGGGIALVGRAADADLRCDDPEMSARHALLTVGLDGGLRAVALAAAAVRVDDVFAEGE------VLVTDGAAIELGSSTLRCRRSTDPSTRPASAPIDVIGGRVHRPPRALSPAEPAIVDTAGPPPSPTPRHG 414
            SGPD G    + GG  A VGRA DAD+  DDP++S  H  +TVG DG +    L A     +    +GE      V +  GA + +G S LR      P+  PASA  +   GR+        P  P       PP +P P  G
Sbjct:   99 SGPDAGGVHLLHGG-RAGVGRAEDADIALDDPDVSRAHCAVTVGADGRV----LVADLDSTNGTTVDGEPVGREPVRLAPGALLRIGESGLRLADEPPPAV-PASADGE---GRLRVATPDAGPVVPFAPAEQAPPSAPAPDAG 233
[Close]
BLAST of mRNA_P-wetherbeei_contig10442.1.1 vs. uniprot
Match: UPI0004179EB8 (FtsK/SpoIIIE domain-containing protein n=2 Tax=Arsenicicoccus bolidensis TaxID=229480 RepID=UPI0004179EB8)

HSP 1 Score: 53.1 bits (126), Expect = 2.150e-5
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = 1 
Query:    4 GPDTGTTGTIEGGGIALVGRAADADLRCDDPEMSARHALLTVGLDGGLRAVALAAAAVRVDDVFAEGEVLVTDGAAIELGSSTLRCRRS 270
            GPD G    +  G   +VGR   +D+  DDPE+S RHA+++V  DG L     +     VD    EG V +T G  + LGSS +  RRS
Sbjct:   95 GPDAGRVVPLPAG-PHVVGRDPTSDITLDDPELSRRHAVVSVDDDGVLLTDCGSTNGSHVDGEAVEGSVALTVGTRVRLGSSVVSVRRS 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10442.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0S1UKN2_9ACTN1.590e-534.72FHA domain-containing protein n=3 Tax=Streptomyces... [more]
A0A3N6FB63_9ACTN2.100e-534.72ESX-1 secretion system protein EccCa1 n=105 Tax=St... [more]
UPI0004179EB82.150e-539.33FtsK/SpoIIIE domain-containing protein n=2 Tax=Ars... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10442contigP-wetherbeei_contig10442:484..897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog66897.DJ64_35400
PFAMsFHA,Yop-YscD_cpl
Model size414
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.1e-08
EggNOG OGsCOG1716@1|root,COG1716@2|Bacteria,2I37V@201174|Actinobacteria
DescriptionForkhead associated domain
Cds size414
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185869.5633333-CDS-P-wetherbeei_contig10442:483..8971683185869.5633333-CDS-P-wetherbeei_contig10442:483..897Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10442 484..897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10442.1.1prot_P-wetherbeei_contig10442.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10442 484..897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10442.1.1

>prot_P-wetherbeei_contig10442.1.1 ID=prot_P-wetherbeei_contig10442.1.1|Name=mRNA_P-wetherbeei_contig10442.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=138bp
SGPDTGTTGTIEGGGIALVGRAADADLRCDDPEMSARHALLTVGLDGGLR
AVALAAAAVRVDDVFAEGEVLVTDGAAIELGSSTLRCRRSTDPSTRPASA
PIDVIGGRVHRPPRALSPAEPAIVDTAGPPPSPTPRHG
back to top

mRNA from alignment at P-wetherbeei_contig10442:484..897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10442.1.1 ID=mRNA_P-wetherbeei_contig10442.1.1|Name=mRNA_P-wetherbeei_contig10442.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig10442:484..897+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGGGCCCGACACCGGAACCACCGGCACGATCGAAGGCGGCGGCATCGC
CCTCGTCGGACGGGCGGCCGACGCCGACCTCCGTTGCGACGACCCGGAGA
TGTCCGCCCGTCATGCCCTGCTCACCGTCGGGCTCGATGGCGGGCTGCGA
GCCGTCGCCCTGGCCGCCGCGGCCGTCCGAGTCGACGACGTGTTCGCCGA
GGGCGAGGTGCTCGTCACCGACGGTGCCGCCATCGAGCTCGGCTCGAGCA
CTCTGCGCTGTCGCCGATCGACCGACCCGTCGACCCGCCCGGCATCGGCA
CCCATCGATGTGATCGGCGGCAGGGTGCATCGTCCACCGCGGGCCTTGTC
GCCGGCCGAACCTGCCATCGTCGACACGGCAGGTCCCCCGCCGTCGCCGA
CGCCGCGCCACGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10442:484..897+

>mRNA_P-wetherbeei_contig10442.1.1 ID=mRNA_P-wetherbeei_contig10442.1.1|Name=mRNA_P-wetherbeei_contig10442.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=414bp|location=Sequence derived from alignment at P-wetherbeei_contig10442:484..897+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGGGCCCGACACCGGAACCACCGGCACGATCGAAGGCGGCGGCATCGC
CCTCGTCGGACGGGCGGCCGACGCCGACCTCCGTTGCGACGACCCGGAGA
TGTCCGCCCGTCATGCCCTGCTCACCGTCGGGCTCGATGGCGGGCTGCGA
GCCGTCGCCCTGGCCGCCGCGGCCGTCCGAGTCGACGACGTGTTCGCCGA
GGGCGAGGTGCTCGTCACCGACGGTGCCGCCATCGAGCTCGGCTCGAGCA
CTCTGCGCTGTCGCCGATCGACCGACCCGTCGACCCGCCCGGCATCGGCA
CCCATCGATGTGATCGGCGGCAGGGTGCATCGTCCACCGCGGGCCTTGTC
GCCGGCCGAACCTGCCATCGTCGACACGGCAGGTCCCCCGCCGTCGCCGA
CGCCGCGCCACGGC
back to top