mRNA_P-wetherbeei_contig10429.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10429.1.1
Unique NamemRNA_P-wetherbeei_contig10429.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: D8LIE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.230e-22
Identity = 59/121 (48.76%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   55 YLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDW-------RGASTRPWVEDKLFPTMRSLAATSVAAVRDT-INAAGRRRCFELLGYDFMV 393
            + H+  YVR SSV YSN P ++ DRF+HLTN+AVQ++S  YG  EPGNK + A+     ++DW          +   WVE  L P M S+ ATSVAA     IN  GR   FELLGYDFMV
Sbjct:  404 WCHQDAYVRTSSVRYSNHPSKVKDRFIHLTNNAVQRRSPSYGHDEPGNKLTLAD-----LQDWLDGDESIHKGNACGWVEQTLRPRMHSMVATSVAAASQAGINRRGRPYAFELLGYDFMV 519          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0A6H5LNH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNH0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.830e-22
Identity = 61/121 (50.41%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   55 YLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGA--STRP-----WVEDKLFPTMRSLAATSVAAVRDT-INAAGRRRCFELLGYDFMV 393
            + H+  YVR SSV Y+N P ++ DRFVHLTN+AVQ++S  YG+ EPGNK + A+     ++DW     ST       WVE  L P M S+ ATSVAA     IN  GR   FELLGYDFMV
Sbjct:  597 WCHQDAYVRTSSVRYTNHPSKVKDRFVHLTNNAVQRQSPSYGQDEPGNKLTLAD-----LQDWLDGDGSTHKGKAFGWVEQTLRPRMHSMVATSVAAASQAGINRRGRPYAFELLGYDFMV 712          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0A7S3US62_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3US62_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 3.130e-21
Identity = 61/144 (42.36%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    1 RCFVLLVA-----------DGTDGGRP--LGYLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            RC+VLLVA                 RP    +L R  YVR SS  +     RL D+F+HLTNDAVQ K + YGK+E GNK S  E  +     + G +   +VE+ + P ++ LA  SV AV   IN + R+ CFELLGYDFM+
Sbjct:  166 RCWVLLVARPXXXXXXXXXXXXXXRRPGLAAHLFREGYVRTSSARFDARRDRLGDKFIHLTNDAVQNKGKDYGKYEAGNKMSFEEFQAYIDETYDGKAN--YVEEHMLPGIKELARLSVEAVALEINKSRRKCCFELLGYDFMI 307          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0BFJ4_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BFJ4_PARTE)

HSP 1 Score: 81.6 bits (200), Expect = 1.870e-15
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 RCFVLLVADGTDGGRPLGYLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            RC++LL +     G   GY ++  Y+R SS  ++    +  DRFVHLTNDAVQ K + YGKHEPGNK S  E       ++  +    +V+  ++P MRS A   + A    I+   R   FEL G DFM+
Sbjct:  655 RCYMLLTSQN---GIFKGYWYQEGYIRTSSKEFTT---KCLDRFVHLTNDAVQSKDQDYGKHEPGNKISYLEFQRYVECNYPNSKFNFFVD--IYPKMRSAALDMMKATYGKIDPHRRINSFELYGLDFMI 777          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0BW79_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BW79_PARTE)

HSP 1 Score: 80.1 bits (196), Expect = 6.460e-15
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 RCFVLLVADGTDGGRPLGYLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            RC++LL +     G   GY ++  Y+R SS  ++    +  DRFVHLTNDAVQ K + YGKHEPGNK S  E       ++  +    +++  ++P MR+ A   + A    I+   R   FEL G DFM+
Sbjct:  647 RCYMLLTSQN---GIFKGYWYQEGYIRTSSKEFTT---KCLDRFVHLTNDAVQSKDQDYGKHEPGNKISYLEFQRYVECNYPNSKFNFFID--IYPKMRAAALDMMKATYGKIDPHRRINSFELYGLDFMI 769          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0BZG0_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BZG0_PARTE)

HSP 1 Score: 79.3 bits (194), Expect = 1.200e-14
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 1
Query:    1 RCFVLLVADGTDGGRPLGYLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            RC++LL +     G   GY ++  Y+R SS  ++    +  DRFVHLTNDAVQ K + YGKHEPGNK S  E       +   +    +++  ++P M+S A   + A    I+   R   FEL G DFM+
Sbjct:  643 RCYMLLTSQN---GIFKGYWYQEGYIRTSSKEFTT---KCLDRFVHLTNDAVQSKDQDYGKHEPGNKISYLEFQRYVEANHPNSKFNFFID--IYPKMKSAALEMMKATYGKIDPHRRINSFELYGLDFMI 765          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0A2R5H210_9STRA (Tubulin glycylase 3D n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H210_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.290e-14
Identity = 55/149 (36.91%), Postives = 69/149 (46.31%), Query Frame = 1
Query:    1 RCFVLLVADGTDGGRPLG------------------YLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            RCF LLV        PLG                  YLH + YVR SS  YS   + L DRFVHLTNDAVQ K+  YG+ E  NK S  + A  A+    G      V +  +P +R++   +       I  + R R FEL G DFM+
Sbjct:  176 RCFALLVFSENSSVMPLGTQDSTASPAEGCEQGFRLYLHDQAYVRTSSRPYST--KNLEDRFVHLTNDAVQSKAREYGRAEAANKLSFDQLAE-ALEASEGPGAGAQVRESFWPQIRTICHETFRNAVTAIQPSRRGRRFELFGLDFMI 321          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0A0V0R905_PSEPJ (Uncharacterized protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0R905_PSEPJ)

HSP 1 Score: 79.0 bits (193), Expect = 1.590e-14
Identity = 39/110 (35.45%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   64 RRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            R  Y+R +S  YS S + +A+ ++HLTN+A+QK  + YG+HE GN+ S  +      ++  G S    + ++LFP M+ +   S  +V+  IN   ++ CFE+ GYDF++
Sbjct:  198 REGYIRTASHQYSVSDQSIANPYIHLTNNAIQKNCQDYGQHEQGNQLSFKQFDEYLKKNQAGGS----LYEELFPRMKQIILLSFESVKQKINIFNKQNCFEIFGYDFVI 303          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0A1R2C9Q5_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C9Q5_9CILI)

HSP 1 Score: 79.0 bits (193), Expect = 1.590e-14
Identity = 48/131 (36.64%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 RCFVLLVADGTDGGRPLGYLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            RCF L+ +  ++     GY +   Y+R SS  +S   + L ++++HLTNDAVQKKSE YGK+E GNK S  +  +     +  A+     E+ +   ++++   S  AV D I+   R   FEL GYDFM+
Sbjct:  445 RCFALMTSVNSN---IQGYFYTEGYIRTSSKKFST--KHLENKYIHLTNDAVQKKSEDYGKYEAGNKISYNDLQNYKNTTYPKANIN--FENDIQKKIKNIVRQSFKAVYDKIDQYKRLHSFELFGYDFMI 568          
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Match: A0A7S3JFC1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JFC1_9SPIT)

HSP 1 Score: 74.7 bits (182), Expect = 2.500e-13
Identity = 48/134 (35.82%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    1 RCFVLLVADGTDGGRPLGYLHRRPYVRLSSVAYSNSPRRLADRFVHLTNDAVQKKSEGYGKHEPGNKASSAEAAS---LAIRDWRGASTRPWVEDKLFPTMRSLAATSVAAVRDTINAAGRRRCFELLGYDFMV 393
            RC+ L+ +     G   GY +R  Y+R +   +S   + + ++++HLTNDA+QK S  YGK+E GNK S  E          DW+        E K++P M+ LA  ++ A    I+   R   FEL GYDFMV
Sbjct:  147 RCYSLITSIN---GNLCGYWYRDGYIRTACKEFSL--KNVTNKYIHLTNDAIQKNSICYGKYEDGNKLSYKEFQKHFDFVHPDWKID-----FEGKIYPQMKKLATDTIKATYLQIDPYRRHHSFELFGYDFMV 270          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10429.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIE2_ECTSI1.230e-2248.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LNH0_9PHAE1.830e-2250.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3US62_HETAK3.130e-2142.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0BFJ4_PARTE1.870e-1538.93Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0BW79_PARTE6.460e-1537.40Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0BZG0_PARTE1.200e-1437.40Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A2R5H210_9STRA1.290e-1436.91Tubulin glycylase 3D n=1 Tax=Hondaea fermentalgian... [more]
A0A0V0R905_PSEPJ1.590e-1435.45Uncharacterized protein n=1 Tax=Pseudocohnilembus ... [more]
A0A1R2C9Q5_9CILI1.590e-1436.64Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A7S3JFC1_9SPIT2.500e-1335.82Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10429contigP-wetherbeei_contig10429:2..1110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIE2
PFAMsTTL
Model size393
Max annot lvl2759|Eukaryota
KEGG koko:K06047
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.02e-23
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-18_003990.1
EC6.3.2.25
Descriptionprotein polyglycylation
Cds size393
COG categoryS
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.9041781-CDS-P-wetherbeei_contig10429:1..2641683185868.9041781-CDS-P-wetherbeei_contig10429:1..264Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10429 2..264 +
1683185868.912748-CDS-P-wetherbeei_contig10429:980..11101683185868.912748-CDS-P-wetherbeei_contig10429:980..1110Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10429 981..1110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10429.1.1prot_P-wetherbeei_contig10429.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10429 2..1110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10429.1.1

>prot_P-wetherbeei_contig10429.1.1 ID=prot_P-wetherbeei_contig10429.1.1|Name=mRNA_P-wetherbeei_contig10429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
RCFVLLVADGTDGGRPLGYLHRRPYVRLSSVAYSNSPRRLADRFVHLTND
AVQKKSEGYGKHEPGNKASSAEAASLAIRDWRGASTRPWVEDKLFPTMRS
LAATSVAAVRDTINAAGRRRCFELLGYDFMV
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mRNA from alignment at P-wetherbeei_contig10429:2..1110+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10429.1.1 ID=mRNA_P-wetherbeei_contig10429.1.1|Name=mRNA_P-wetherbeei_contig10429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1109bp|location=Sequence derived from alignment at P-wetherbeei_contig10429:2..1110+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTGCTTCGTGCTGCTCGTGGCGGACGGTACGGACGGTGGTCGGCCGCT GGGGTACCTTCACAGGAGGCCTTACGTGCGTCTCTCGAGCGTCGCGTACT CCAACAGCCCGCGCCGGCTTGCCGACCGCTTCGTCCACCTGACGAACGAC GCCGTCCAGAAGAAGTCCGAAGGGTACGGCAAGCACGAGCCTGGCAACAA GGCGAGTTCAGCAGAGGCGGCATCGCTTGCCATTCGGGATTGGCGTGGTG CATCCACGCGACCGTTTGACATTCCTTTCTGCATGTTTCATTCAACTTAG GGTTTCAGGCTGCCATTTCTCCGCTTGGGTCTGCTCCTTGGCTGCTCGCG TTGTTCCGGCGAAGGTGCGACAAGAAATGACCTTGTGTGCCGGGATGTCG CAATTCGTGAGGTTGCCGGAGTAGGCATTGGAGTTTACAGAAACCTGCAT GGTTTAAAAAGCACGTGAAGGGGAGCGCTGGATTCGTGCGCCTCAGTGCT GCTCTTGACCCTGGCAGCCTCCACAATTCCAATCAGTGTTCAGATTTCCT TCTGCCGCCGGGCCTGACGGGTTTATGGCCCTTTTCTCTGCACCGCCGCG GCAGATGGACATGTCGGAGCTGCAGGCATACCTCGATGAGCGGGAGCCCG GCCACGAAGGGTCAGTCCGACAGATATGCCGGGGCCGCGCATTTCCCCTT GTCATCTTACTTTGTCTTTCCGTCTTCGAAAACCATCTCTCTCTTTGTCT GCTGGAAGAGCGTCATTTGGCTGTTAAGGCCGACATCTCATCAGAGGCGT TTGGGGCTGACCGGATGAATCAGTGCGGCTGCATAAAGGCCTGAGACGCG TAGACATATCGACTGGCAGCTGACTCCAGAGCGTCGCGAGACGAAATCCA CCTCGGCTCCTTCCTCACATTGTCAAGCCCGAATTTGCCTTGGCTTACTT CTTCCCTTTCTCTTCTCGTCTCCTGGCAGGTGGGTGGAAGATAAGCTGTT CCCGACGATGCGGTCGCTAGCAGCGACGTCAGTGGCGGCGGTGCGCGACA CCATCAACGCTGCCGGCCGCCGCCGTTGCTTCGAGTTGCTCGGATATGAC TTCATGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10429:2..1110+

>mRNA_P-wetherbeei_contig10429.1.1 ID=mRNA_P-wetherbeei_contig10429.1.1|Name=mRNA_P-wetherbeei_contig10429.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig10429:2..1110+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTGCTTCGTGCTGCTCGTGGCGGACGGTACGGACGGTGGTCGGCCGCT
GGGGTACCTTCACAGGAGGCCTTACGTGCGTCTCTCGAGCGTCGCGTACT
CCAACAGCCCGCGCCGGCTTGCCGACCGCTTCGTCCACCTGACGAACGAC
GCCGTCCAGAAGAAGTCCGAAGGGTACGGCAAGCACGAGCCTGGCAACAA
GGCGAGTTCAGCAGAGGCGGCATCGCTTGCCATTCGGGATTGGCGTGGTG
CATCCACGCGACCGTGGGTGGAAGATAAGCTGTTCCCGACGATGCGGTCG
CTAGCAGCGACGTCAGTGGCGGCGGTGCGCGACACCATCAACGCTGCCGG
CCGCCGCCGTTGCTTCGAGTTGCTCGGATATGACTTCATGGTG
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