mRNA_P-wetherbeei_contig10427.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10427.1.1
Unique NamemRNA_P-wetherbeei_contig10427.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10427.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10427contigP-wetherbeei_contig10427:1117..2277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1161
Hectar predicted targeting categoryother localisation
Exons1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.8248866-CDS-P-wetherbeei_contig10427:1116..18931683185868.8248866-CDS-P-wetherbeei_contig10427:1116..1893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10427 1117..1893 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.8328617-UTR-P-wetherbeei_contig10427:1893..22771683185868.8328617-UTR-P-wetherbeei_contig10427:1893..2277Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10427 1894..2277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10427.1.1prot_P-wetherbeei_contig10427.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10427 1117..1893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10427.1.1

>prot_P-wetherbeei_contig10427.1.1 ID=prot_P-wetherbeei_contig10427.1.1|Name=mRNA_P-wetherbeei_contig10427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=259bp
MRQVMRRPRRRRQMRRKTRRAGRFLRQQRCLSCVFAGEELSEPDPLELVA
VYRPHALAAATGARRDRAAGAAAGKKQPGPQQQVAIALFEEIEREARERP
QDTRKPVAAAVAVTPVAAAAAEDGDGVAARGDEFFADNDAFLRALLGLKI
DESANSASRLGRDPRRQPALAPDRHGRDGRHRRRRRSSSRRRRRQQRRRR
RRKRVQTCGVSTVPGRRFRRRAAGGREGLPVARSGGAGVVELRRGGVVVS
APDGAAAAA
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mRNA from alignment at P-wetherbeei_contig10427:1117..2277-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10427.1.1 ID=mRNA_P-wetherbeei_contig10427.1.1|Name=mRNA_P-wetherbeei_contig10427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1161bp|location=Sequence derived from alignment at P-wetherbeei_contig10427:1117..2277- (Phaeothamnion wetherbeei SAG_119_79)
CGATCACCACCACCACCACCCGCGGAAGCCCATGCATATGCAGCTGCCAC
CAGCTGGCCAATCGACGCCGCCACCACCGCAGCCGCAGCCGCTGACGCCG
CAGCAATCGCGGCCGTTGCCATGGGGCGCAGCAGCCGCAGTGACGGCGAC
GGCTGCGCCGACGGCAAAGCAGCAGCAGCGGTGGTGGCGACGGCGGATGT
TGGGGGGCGGCCCCTCGGAGTGCCACAGCATCGAGACGGCAGCTAGCGCG
GCCACGGCCGCCGGCAAGAAACAGCTGGGGCTGCGGACCAAATGCCTGAG
GCACTTGGGAGAAAAAGGAGCAGGAGATACTCACGGTGCTTCGGGAGGAA
GTGAAGTGGGAGAAGCTGGAGCAGGACGAAAGCAATGCGGCAGGTGATGC
GGCGACCGCGGCGGCGGCGGCAGATGAGGAGGAAGACGCGGCGTGCGGGA
CGGTTTCTTCGCCAACAACGATGCCTTTCTTGTGTCTTCGCCGGCGAGGA
ACTGTCGGAGCCTGACCCGCTGGAGCTTGTTGCGGTTTATCGTCCGCATG
CCTTGGCTGCGGCAACTGGGGCGCGGCGCGACAGGGCCGCGGGGGCCGCC
GCGGGCAAGAAGCAGCCGGGGCCGCAACAGCAGGTGGCCATCGCGCTTTT
TGAGGAAATAGAGCGGGAGGCGCGGGAGAGGCCACAGGATACGCGAAAGC
CGGTTGCGGCAGCGGTGGCGGTGACACCAGTAGCAGCGGCGGCGGCGGAA
GATGGGGATGGTGTTGCCGCGCGTGGAGATGAATTCTTCGCCGACAACGA
TGCTTTTCTTCGTGCTCTTCTAGGCTTAAAGATTGACGAGAGCGCCAACT
CGGCTTCGCGTCTCGGGCGAGACCCACGGAGGCAGCCGGCCCTGGCCCCG
GATCGGCACGGTCGAGACGGTCGCCATCGCCGCCGCCGCAGAAGCAGCAG
CAGGAGGAGGCGGCGGCAGCAGCGGCGGAGGCGGAGGCGGAAGCGGGTGC
AGACCTGCGGAGTGTCGACTGTTCCCGGCAGACGCTTCCGGCGGCGCGCC
GCCGGCGGACGAGAGGGGCTCCCAGTCGCACGCAGCGGCGGTGCAGGCGT
CGTGGAACTACGCCGAGGCGGCGTCGTTGTCAGCGCGCCTGACGGAGCTG
CAGCAGCAGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10427:1117..2277-

>mRNA_P-wetherbeei_contig10427.1.1 ID=mRNA_P-wetherbeei_contig10427.1.1|Name=mRNA_P-wetherbeei_contig10427.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=777bp|location=Sequence derived from alignment at P-wetherbeei_contig10427:1117..2277- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCAGGTGATGCGGCGACCGCGGCGGCGGCGGCAGATGAGGAGGAA
GACGCGGCGTGCGGGACGGTTTCTTCGCCAACAACGATGCCTTTCTTGTG
TCTTCGCCGGCGAGGAACTGTCGGAGCCTGACCCGCTGGAGCTTGTTGCG
GTTTATCGTCCGCATGCCTTGGCTGCGGCAACTGGGGCGCGGCGCGACAG
GGCCGCGGGGGCCGCCGCGGGCAAGAAGCAGCCGGGGCCGCAACAGCAGG
TGGCCATCGCGCTTTTTGAGGAAATAGAGCGGGAGGCGCGGGAGAGGCCA
CAGGATACGCGAAAGCCGGTTGCGGCAGCGGTGGCGGTGACACCAGTAGC
AGCGGCGGCGGCGGAAGATGGGGATGGTGTTGCCGCGCGTGGAGATGAAT
TCTTCGCCGACAACGATGCTTTTCTTCGTGCTCTTCTAGGCTTAAAGATT
GACGAGAGCGCCAACTCGGCTTCGCGTCTCGGGCGAGACCCACGGAGGCA
GCCGGCCCTGGCCCCGGATCGGCACGGTCGAGACGGTCGCCATCGCCGCC
GCCGCAGAAGCAGCAGCAGGAGGAGGCGGCGGCAGCAGCGGCGGAGGCGG
AGGCGGAAGCGGGTGCAGACCTGCGGAGTGTCGACTGTTCCCGGCAGACG
CTTCCGGCGGCGCGCCGCCGGCGGACGAGAGGGGCTCCCAGTCGCACGCA
GCGGCGGTGCAGGCGTCGTGGAACTACGCCGAGGCGGCGTCGTTGTCAGC
GCGCCTGACGGAGCTGCAGCAGCAGCT
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