mRNA_P-wetherbeei_contig10417.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10417.1.1
Unique NamemRNA_P-wetherbeei_contig10417.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A7Y8JB18_9RHOO (Entericidin A/B family lipoprotein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7Y8JB18_9RHOO)

HSP 1 Score: 58.2 bits (139), Expect = 5.740e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   94 MNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            M KL+ L  L   LAGCNTVQGIG+D+E+GGEAIQRAVK
Sbjct:    1 MKKLLGLCALIVFLAGCNTVQGIGKDIEKGGEAIQRAVK 39          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A1F4AY98_9PROT (Entericidin n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4AY98_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 3.890e-9
Identity = 23/44 (52.27%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   82 KELAMNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVKK 213
            KE+ M KL++L L+    +GCNT+QG+G+D++QGGEA++RA  K
Sbjct:    3 KEIGMKKLLFLTLVVLFTSGCNTLQGVGKDLKQGGEALERAGSK 46          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: UPI001BBC639E (Entericidin A/B family lipoprotein n=1 Tax=Sulfuritalea sp. TaxID=2480090 RepID=UPI001BBC639E)

HSP 1 Score: 55.5 bits (132), Expect = 6.680e-9
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   94 MNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            M +++ L+     LAGCNTVQGIG+D+E+GGEAIQ+AVK
Sbjct:    1 MKRILCLIAAAVFLAGCNTVQGIGKDIEKGGEAIQKAVK 39          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A2H0G4S7_9PROT (Entericidin n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2H0G4S7_9PROT)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-8
Identity = 23/37 (62.16%), Postives = 32/37 (86.49%), Query Frame = 1
Query:  100 KLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            K+V L  + A +AGCNTV+G+G+D+E+GGEAIQ+AVK
Sbjct:   13 KIVLLAAIAAGVAGCNTVKGVGQDIEKGGEAIQKAVK 49          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A518U8X3_9PROT (Entericidin n=1 Tax=Denitratisoma sp. DHT3 TaxID=1981880 RepID=A0A518U8X3_9PROT)

HSP 1 Score: 54.7 bits (130), Expect = 1.370e-8
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:   94 MNKLVYLVLLCA-ALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            M +L +++L+ A  L GCNTVQGIGRD+E+GGEAIQ+AVK
Sbjct:    1 MKRLSFVLLVLALGLVGCNTVQGIGRDIEKGGEAIQKAVK 40          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A011MMU3_9PROT (3-isopropylmalate dehydratase large subunit n=6 Tax=unclassified Candidatus Accumulibacter TaxID=2619054 RepID=A0A011MMU3_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 6.670e-8
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    7 YPRRWRPLLPSPDISSTYANGVNNR--KELAMNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            +PRR R L     IS+  ANG   +  +    N+ + +VL   A+AGCNTVQGIG+D+E+GG+AI RA +
Sbjct:  441 WPRRQRLLA----ISAMSANGPRRQGAEMKRRNRFLLIVLAAIAVAGCNTVQGIGKDIEKGGQAIGRAAR 506          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A3N0V5H9_9PROT (Entericidin A/B family lipoprotein n=1 Tax=Pseudomethylobacillus aquaticus TaxID=2676064 RepID=A0A3N0V5H9_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 7.770e-8
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   94 MNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            MNK+  L++  A LAGCNTV G+G+D+E+GGEAIQ++ K
Sbjct:    1 MNKVFLLLVSMAFLAGCNTVAGVGKDLEKGGEAIQKSAK 39          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A7X6WS83_9BURK (Entericidin A/B family lipoprotein n=1 Tax=Oxalobacter sp. TaxID=2093374 RepID=A0A7X6WS83_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 1.570e-7
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   94 MNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            M KL  L+ + A LAGCNTVQG+G+D+++GGEA+++A +
Sbjct:    1 MKKLFVLMAVIAFLAGCNTVQGVGKDIQKGGEAVEKAAQ 39          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A1N7A4L1_9GAMM (Entericidin B n=1 Tax=Aeromonas sp. RU39B TaxID=1907416 RepID=A0A1N7A4L1_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.570e-7
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   94 MNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            M  LVY +LLC  L+ CNTV+GIG D++Q G AI RA +
Sbjct:    1 MRSLVYALLLCGLLSACNTVRGIGEDIQQAGSAISRATR 39          
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Match: A0A1Q3R9G1_9BURK (Entericidin n=1 Tax=Burkholderiales bacterium 68-10 TaxID=1895730 RepID=A0A1Q3R9G1_9BURK)

HSP 1 Score: 52.0 bits (123), Expect = 1.570e-7
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   94 MNKLVYLVLLCAALAGCNTVQGIGRDVEQGGEAIQRAVK 210
            M K ++LV +  ALAGCNTVQG+G+DV++ G A+++A K
Sbjct:    1 MKKALFLVAIAFALAGCNTVQGVGKDVQKAGSAVEKAAK 39          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10417.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y8JB18_9RHOO5.740e-1071.79Entericidin A/B family lipoprotein n=1 Tax=Rhodocy... [more]
A0A1F4AY98_9PROT3.890e-952.27Entericidin n=3 Tax=unclassified Betaproteobacteri... [more]
UPI001BBC639E6.680e-961.54Entericidin A/B family lipoprotein n=1 Tax=Sulfuri... [more]
A0A2H0G4S7_9PROT1.160e-862.16Entericidin n=2 Tax=Proteobacteria TaxID=1224 RepI... [more]
A0A518U8X3_9PROT1.370e-865.00Entericidin n=1 Tax=Denitratisoma sp. DHT3 TaxID=1... [more]
A0A011MMU3_9PROT6.670e-845.713-isopropylmalate dehydratase large subunit n=6 Ta... [more]
A0A3N0V5H9_9PROT7.770e-858.97Entericidin A/B family lipoprotein n=1 Tax=Pseudom... [more]
A0A7X6WS83_9BURK1.570e-753.85Entericidin A/B family lipoprotein n=1 Tax=Oxaloba... [more]
A0A1N7A4L1_9GAMM1.570e-756.41Entericidin B n=1 Tax=Aeromonas sp. RU39B TaxID=19... [more]
A0A1Q3R9G1_9BURK1.570e-753.85Entericidin n=1 Tax=Burkholderiales bacterium 68-1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10417contigP-wetherbeei_contig10417:162..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog382245.ASA_3243
PFAMsGSDH
Model size216
Max annot lvl135624|Aeromonadales
KEGG koko:K21430
Hectar predicted targeting categorysignal anchor
Exons1
Evalue8.48e-07
EggNOG OGsCOG2133@1|root,COG5510@1|root,COG2133@2|Bacteria,COG5510@2|Bacteria,1MV2E@1224|Proteobacteria,1RNGN@1236|Gammaproteobacteria,1Y51M@135624|Aeromonadales
DescriptionGlucose / Sorbosone dehydrogenase
Cds size216
COG categoryG
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.540912-CDS-P-wetherbeei_contig10417:161..3771683185868.540912-CDS-P-wetherbeei_contig10417:161..377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10417 162..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10417.1.1prot_P-wetherbeei_contig10417.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10417 162..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10417.1.1

>prot_P-wetherbeei_contig10417.1.1 ID=prot_P-wetherbeei_contig10417.1.1|Name=mRNA_P-wetherbeei_contig10417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=72bp
TSYPRRWRPLLPSPDISSTYANGVNNRKELAMNKLVYLVLLCAALAGCNT
VQGIGRDVEQGGEAIQRAVKK*
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mRNA from alignment at P-wetherbeei_contig10417:162..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10417.1.1 ID=mRNA_P-wetherbeei_contig10417.1.1|Name=mRNA_P-wetherbeei_contig10417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig10417:162..377+ (Phaeothamnion wetherbeei SAG_119_79)
ACCTCGTATCCCCGGCGATGGCGGCCGCTGCTGCCATCGCCGGACATTTC GTCGACGTACGCCAATGGCGTTAACAATCGAAAGGAGCTAGCCATGAACA AGCTGGTTTATTTGGTTTTGCTGTGCGCGGCGCTTGCGGGCTGCAACACC GTCCAGGGCATCGGTAGGGACGTCGAGCAGGGCGGGGAGGCGATCCAGAG GGCGGTAAAGAAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10417:162..377+

>mRNA_P-wetherbeei_contig10417.1.1 ID=mRNA_P-wetherbeei_contig10417.1.1|Name=mRNA_P-wetherbeei_contig10417.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=216bp|location=Sequence derived from alignment at P-wetherbeei_contig10417:162..377+ (Phaeothamnion wetherbeei SAG_119_79)
ACCTCGTATCCCCGGCGATGGCGGCCGCTGCTGCCATCGCCGGACATTTC
GTCGACGTACGCCAATGGCGTTAACAATCGAAAGGAGCTAGCCATGAACA
AGCTGGTTTATTTGGTTTTGCTGTGCGCGGCGCTTGCGGGCTGCAACACC
GTCCAGGGCATCGGTAGGGACGTCGAGCAGGGCGGGGAGGCGATCCAGAG
GGCGGTAAAGAAATAG
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