mRNA_P-wetherbeei_contig10410.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10410.2.1
Unique NamemRNA_P-wetherbeei_contig10410.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A3C0TWR3_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TWR3_9PROT)

HSP 1 Score: 279 bits (714), Expect = 4.850e-93
Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 1
Query:    1 MKVLEFLGGKPAGNGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEPFEHAGFAGVPEGWKPYDEGKPWAKPGSGVEVPLIDTFGPR 459
            MKVLEFL G PAGNGEW Y+LGRELHGAFGGANGGVVGA CV+ ARSL+PGR PA LDVRFIRGLTEG ARVVPVMLHEGRTLSVISVDIFD RGKLCTRATVSMAN EALEPFEH GFAG P+GW PY++GKPWAKPGSGVEVPLIDTFGPR
Sbjct:    1 MKVLEFLRGTPAGNGEWRYELGRELHGAFGGANGGVVGATCVSAARSLAPGRIPAGLDVRFIRGLTEGAARVVPVMLHEGRTLSVISVDIFDSRGKLCTRATVSMANPEALEPFEHDGFAGTPQGWAPYEKGKPWAKPGSGVEVPLIDTFGPR 153          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A353LUE9_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LUE9_9PROT)

HSP 1 Score: 257 bits (656), Expect = 3.280e-84
Identity = 123/153 (80.39%), Postives = 134/153 (87.58%), Query Frame = 1
Query:    1 MKVLEFLGGKPAGNGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEPFEHAGFAGVPEGWKPYDEGKPWAKPGSGVEVPLIDTFGPR 459
            MKVL+FL G PA NGEW +DLGRELHGAFGGANGGVVGA CV  ARS++P R PASLDVRFIRGLTEGTARV+P +LH GRTLSV+SVDIFD R KLCTRATVS+ANL+ALEPFEH GFAG PEGW  Y++GKPWAKP SGVEVPLIDTF PR
Sbjct:    1 MKVLDFLKGTPADNGEWRFDLGRELHGAFGGANGGVVGATCVAAARSVAPERVPASLDVRFIRGLTEGTARVIPTLLHGGRTLSVVSVDIFDSRDKLCTRATVSLANLDALEPFEHDGFAGRPEGWVSYEKGKPWAKPASGVEVPLIDTFDPR 153          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A538BCD7_9ACTN (Thioesterase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538BCD7_9ACTN)

HSP 1 Score: 139 bits (349), Expect = 5.810e-38
Identity = 75/154 (48.70%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 MKVLEFLGGKPAGNGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEPFEHAGFA-GVPEGWKPYDEGKPWAKPGSGVEVPLIDTFGPR 459
            M+  EFLG  P  +G W +++GRELHGAFGGA GGVV A  V  ARS++ GRAP +LD+RF+R L  GTA   P +LH GRTLS +SVD+    G+L  RATVS+   EAL P      A  +P     Y EG+ W K    V  P+I++  PR
Sbjct:    1 MRAAEFLGAIPGEDGTWRFEIGRELHGAFGGAFGGVVAAAAVMTARSVAKGRAPVALDIRFLRSLAAGTAMAAPTILHSGRTLSCVSVDLCTEDGRLAARATVSLVAAEALAPLSRDPDAVSLPL----YAEGRAWPK----VGAPIIESLAPR 146          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A538HGU9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGU9_9ACTN)

HSP 1 Score: 129 bits (324), Expect = 4.440e-34
Identity = 73/152 (48.03%), Postives = 95/152 (62.50%), Query Frame = 1
Query:    7 VLEFLGGKPAGNGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEPFEHAGFAG-VPEGWKPYDEGKPWAKPGSGVEVPLIDTFGPR 459
            + EFLG     +G   + LGRELHGAFGG  GGV+ A  +  +R L+PGR PA+LD  F+RG+  GT R V  +LH GRTL+V++VD+ D R +L TRATV++ +   L P  HAG A  VP  W  + +G  W  P  GVE P+I T  PR
Sbjct:   19 IGEFLGH----DGADRFTLGRELHGAFGGLFGGVLAAAALVASRPLAPGRVPAALDCHFVRGVPAGTLRAVASVLHAGRTLAVVNVDLLDERERLGTRATVTLVDPVGLRPLAHAGVAARVP--WPGHVDGATWRAP-EGVEAPIIATLAPR 163          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A375YU91_MYCSH (Uncharacterized protein n=2 Tax=Mycobacterium shimoidei TaxID=29313 RepID=A0A375YU91_MYCSH)

HSP 1 Score: 111 bits (277), Expect = 3.700e-27
Identity = 66/156 (42.31%), Postives = 85/156 (54.49%), Query Frame = 1
Query:    7 VLEFLGGKPAGNGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEPF-----EHAGFAGVPEGWKPYDEGKPWAKPGSGVEVPLIDTFGPR 459
            V + LG +  G G   ++LGR +HGAFG           +  AR ++PGR PASLDVRF+RGL  GTA     +LH GR+L+ +SVDI D  G+   RATV +A+  AL P      E AG  G       Y  G  W  P  GVE+P++ T  PR
Sbjct:    8 VDDVLGCRTDGEG-LSFELGRNMHGAFGXXXXXXXXXXXLRAARRVAPGRTPASLDVRFLRGLPAGTAHAAATVLHAGRSLTTVSVDIADSTGRAAARATVGLADPAALHPSDTPSAEKAGLTG-------YSGGSDWTTP-DGVEIPIVATLRPR 154          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: UPI001BEE0F61 (Uncharacterized protein n=2 Tax=Mycobacterium spongiae TaxID=886343 RepID=UPI001BEE0F61)

HSP 1 Score: 110 bits (275), Expect = 2.430e-26
Identity = 64/151 (42.38%), Postives = 86/151 (56.95%), Query Frame = 1
Query:    7 VLEFLGGKPAGNGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEPFEHAGFAGVPEGWKPYDEGKPWAKPGSGVEVPLIDTFGPR 459
            V   LG +P  +G   ++ GR LHGAFGGA    V A  +  AR+++P R PASLDVRF+RGL  G+A   P +L  GR+L+ +SVDI D  G+   RATV + +  AL   +      +P     YD G  W  PG  VE+P++ T  PR
Sbjct:   49 VDTLLGCRPDDDG-LRFEFGRHLHGAFGGAFXXGVAAAAIRAARTVAPDRLPASLDVRFLRGLGAGSAHARPTVLRAGRSLTTVSVDIADAAGRPAARATVGLTDAAALYTLDRPTATDMPP-LVGYDAGTDWRAPGD-VEIPILATLHPR 196          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A2D9SNQ9_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D9SNQ9_9GAMM)

HSP 1 Score: 108 bits (270), Expect = 3.950e-26
Identity = 58/135 (42.96%), Postives = 74/135 (54.81%), Query Frame = 1
Query:   55 YDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEPFEHAGFAGVPEGWKPYDEGKPWAKPGSGVEVPLIDTFGPR 459
            Y L   L+G FGG NGGV+ A+C++ AR+ +P R P  +   FIR    G A VV   L+ GR+LS I VD     GKL TR TVS  N  ALEP +  G     E     D+G+ W +P    ++P I TF PR
Sbjct:   20 YHLDESLNGGFGGTNGGVLAAICIDAARAXAPXRTPIGIXAXFIRNXPPGPAXVVATPLNXGRSLSTIXVDXSXXDGKLATRGTVSFVNASALEPXDVKGIPEPDEXXLXPDDGRXWKEPAK-QKIPXIXTFXPR 153          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A523LW13_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LW13_9GAMM)

HSP 1 Score: 98.6 bits (244), Expect = 2.740e-22
Identity = 57/140 (40.71%), Postives = 81/140 (57.86%), Query Frame = 1
Query:   40 NGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTRATVSMANLEALEP-FEHAGFAGVPEGWKPYDEGKPWAKPGSGVEVPLIDTFGP 456
            +G W ++L    +GAFGG NGG + A+ V VAR +S  R P S+D R++R    G ARVVP +L+EGRTLSV+ +DI D    +C  +TV++ +  AL    EH      P      D+ +PW  P +   +PLI T+ P
Sbjct:   15 DGVWTFELMERFNGAFGGTNGGTLTALSVYVARQISA-RQPTSIDSRYLRSFRPGLARVVPSVLNEGRTLSVVGIDIVDENDNVCCHSTVTLVDPAALATSLEHPAIEPPPALAAAQDQ-RPWVAPAAQA-IPLIATYRP 151          
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Match: A0A2X1T4G2_MYCXE (Uncharacterized protein n=1 Tax=Mycobacterium xenopi TaxID=1789 RepID=A0A2X1T4G2_MYCXE)

HSP 1 Score: 52.8 bits (125), Expect = 2.210e-6
Identity = 27/52 (51.92%), Postives = 31/52 (59.62%), Query Frame = 1
Query:   55 YDLGRELHGAFGGANGGVVGAVCVNVARSLSPGRAPASLDVRFIRGLTEGTA 210
            + LGR LHGAFG        A  +  AR    GR PASLD+RF+RGL  GTA
Sbjct:   23 FGLGRHLHGAFGXXXXXXXXAAALQTARHAVSGRMPASLDIRFLRGLPAGTA 74          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10410.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A3C0TWR3_9PROT4.850e-9387.58Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A353LUE9_9PROT3.280e-8480.39Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A538BCD7_9ACTN5.810e-3848.70Thioesterase family protein n=1 Tax=Actinomycetia ... [more]
A0A538HGU9_9ACTN4.440e-3448.03Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A375YU91_MYCSH3.700e-2742.31Uncharacterized protein n=2 Tax=Mycobacterium shim... [more]
UPI001BEE0F612.430e-2642.38Uncharacterized protein n=2 Tax=Mycobacterium spon... [more]
A0A2D9SNQ9_9GAMM3.950e-2642.96Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A523LW13_9GAMM2.740e-2240.71Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2X1T4G2_MYCXE2.210e-651.92Uncharacterized protein n=1 Tax=Mycobacterium xeno... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10410contigP-wetherbeei_contig10410:1894..2352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog457425.XNR_0877
PFAMs4HBT
Model size459
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.95e-06
EggNOG OGsCOG2050@1|root,COG2050@2|Bacteria,2IQXX@201174|Actinobacteria
DescriptionThioesterase superfamily
Cds size459
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185868.3615534-CDS-P-wetherbeei_contig10410:1893..23521683185868.3615534-CDS-P-wetherbeei_contig10410:1893..2352Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10410 1894..2352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10410.2.1prot_P-wetherbeei_contig10410.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10410 1894..2352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10410.2.1

>prot_P-wetherbeei_contig10410.2.1 ID=prot_P-wetherbeei_contig10410.2.1|Name=mRNA_P-wetherbeei_contig10410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=153bp
MKVLEFLGGKPAGNGEWHYDLGRELHGAFGGANGGVVGAVCVNVARSLSP
GRAPASLDVRFIRGLTEGTARVVPVMLHEGRTLSVISVDIFDGRGKLCTR
ATVSMANLEALEPFEHAGFAGVPEGWKPYDEGKPWAKPGSGVEVPLIDTF
GPR
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mRNA from alignment at P-wetherbeei_contig10410:1894..2352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10410.2.1 ID=mRNA_P-wetherbeei_contig10410.2.1|Name=mRNA_P-wetherbeei_contig10410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig10410:1894..2352+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGTACTGGAATTTTTAGGTGGCAAACCTGCGGGCAATGGCGAATG GCATTATGATCTGGGCCGCGAACTGCATGGCGCATTCGGTGGGGCCAATG GCGGCGTGGTAGGGGCGGTGTGTGTAAACGTGGCGCGTTCGCTTTCGCCC GGCCGTGCGCCCGCCAGTCTGGATGTGCGTTTCATCCGTGGATTGACCGA AGGCACGGCGCGGGTCGTGCCGGTAATGCTGCATGAAGGACGCACTTTAT CAGTAATCAGTGTGGATATTTTTGATGGGCGCGGCAAGCTATGCACCCGC GCCACCGTCAGCATGGCCAATCTGGAGGCGCTGGAGCCATTTGAACATGC GGGCTTTGCCGGCGTTCCAGAAGGCTGGAAGCCCTATGACGAAGGAAAGC CCTGGGCAAAACCTGGCAGCGGTGTGGAAGTGCCACTGATAGATACATTC GGTCCGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10410:1894..2352+

>mRNA_P-wetherbeei_contig10410.2.1 ID=mRNA_P-wetherbeei_contig10410.2.1|Name=mRNA_P-wetherbeei_contig10410.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=459bp|location=Sequence derived from alignment at P-wetherbeei_contig10410:1894..2352+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAGTACTGGAATTTTTAGGTGGCAAACCTGCGGGCAATGGCGAATG
GCATTATGATCTGGGCCGCGAACTGCATGGCGCATTCGGTGGGGCCAATG
GCGGCGTGGTAGGGGCGGTGTGTGTAAACGTGGCGCGTTCGCTTTCGCCC
GGCCGTGCGCCCGCCAGTCTGGATGTGCGTTTCATCCGTGGATTGACCGA
AGGCACGGCGCGGGTCGTGCCGGTAATGCTGCATGAAGGACGCACTTTAT
CAGTAATCAGTGTGGATATTTTTGATGGGCGCGGCAAGCTATGCACCCGC
GCCACCGTCAGCATGGCCAATCTGGAGGCGCTGGAGCCATTTGAACATGC
GGGCTTTGCCGGCGTTCCAGAAGGCTGGAAGCCCTATGACGAAGGAAAGC
CCTGGGCAAAACCTGGCAGCGGTGTGGAAGTGCCACTGATAGATACATTC
GGTCCGAGG
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