mRNA_P-wetherbeei_contig1040.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1040.2.1
Unique NamemRNA_P-wetherbeei_contig1040.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1040.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1040contigP-wetherbeei_contig1040:2781..4244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1012
Hectar predicted targeting categoryother localisation
Exons3
Cds size1008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.6731968-CDS-P-wetherbeei_contig1040:2780..28561683185867.6731968-CDS-P-wetherbeei_contig1040:2780..2856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 2781..2856 -
1683185867.6836429-CDS-P-wetherbeei_contig1040:3153..37131683185867.6836429-CDS-P-wetherbeei_contig1040:3153..3713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 3154..3713 -
1683185867.693346-CDS-P-wetherbeei_contig1040:3870..42421683185867.693346-CDS-P-wetherbeei_contig1040:3870..4242Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 3871..4242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.7042956-UTR-P-wetherbeei_contig1040:4242..42441683185867.7042956-UTR-P-wetherbeei_contig1040:4242..4244Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1040 4243..4244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1040.2.1prot_P-wetherbeei_contig1040.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1040 2781..4242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1040.2.1

>prot_P-wetherbeei_contig1040.2.1 ID=prot_P-wetherbeei_contig1040.2.1|Name=mRNA_P-wetherbeei_contig1040.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=336bp
MNRPEEGGPRLGFSASKAGSDVGAKKPSQPQYATAVECHGTAGMSVKNAP
VDSVGVVGEGSTTAATSDSETSRTPTPAASGLTLELSALLDTAAGSASGT
GTSFDSCGVGHERFFECTDPIATQAGSAANGEALRPSVATVESHACESAP
AASSERGGSKSGGGDDSSTDSESTPGGGGSDESTAGGGPGGESAANDGGG
NDDVGGGGNVAGGNSGDNSSSDNGAGENGGSKNGGGHKGGGGNGGGENSG
GENGGDDNSSGRRRRRRISLSLENGADERAAEDADAPRYSARELGARIEA
AEAAAAAAHERAAQDAQTRLEQELTAAHAAADESRR
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mRNA from alignment at P-wetherbeei_contig1040:2781..4244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1040.2.1 ID=mRNA_P-wetherbeei_contig1040.2.1|Name=mRNA_P-wetherbeei_contig1040.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1464bp|location=Sequence derived from alignment at P-wetherbeei_contig1040:2781..4244- (Phaeothamnion wetherbeei SAG_119_79)
GGATGAACCGACCTGAGGAAGGCGGCCCGAGGCTCGGATTTTCGGCCAGC
AAGGCAGGAAGCGATGTCGGCGCAAAGAAGCCCTCCCAGCCGCAGTATGC
TACCGCCGTGGAGTGCCATGGCACCGCCGGCATGTCCGTCAAGAACGCCC
CGGTGGACTCGGTCGGCGTCGTGGGTGAGGGCTCCACCACCGCCGCCACT
TCCGACAGCGAGACCTCGCGTACTCCGACGCCGGCCGCCAGCGGCCTCAC
CCTCGAGCTGTCTGCGCTCCTGGATACCGCCGCCGGCTCGGCGTCGGGAA
CCGGGACCAGTTTTGACAGCTGCGGCGTGGGCCACGAGCGATTTTTCGAA
TGTACCGACCCCATCGCGACCCAGGTGATGCATCGTGTCTTTCCAAAGCT
TCAATCCCTTTTCGATACTGTTTTGCCAGCGGCTCGAGGAAGAGCCCCGG
CAGGTTCATACTGCTTTTCTCCTTCATCATCCGAGGCGTTCTTTTCCACG
ACCTTTTGGACTGAGCCTGCCACATGTACAGGCCGGATCCGCTGCGAACG
GCGAGGCGCTGCGGCCTTCCGTCGCGACCGTAGAAAGCCATGCCTGCGAG
AGCGCTCCCGCTGCCTCATCGGAACGTGGTGGCAGCAAAAGCGGCGGCGG
CGACGACAGCAGCACTGACAGCGAGAGCACTCCGGGCGGCGGGGGCAGTG
ACGAAAGCACGGCCGGCGGCGGGCCTGGCGGCGAAAGCGCGGCCAACGAC
GGGGGCGGCAACGATGACGTCGGCGGCGGTGGCAATGTCGCTGGCGGCAA
CAGCGGCGACAACAGTAGTAGCGACAACGGTGCCGGCGAGAACGGCGGCA
GCAAAAACGGTGGCGGTCACAAGGGCGGCGGCGGGAACGGTGGCGGCGAG
AACAGCGGCGGCGAGAATGGCGGCGACGACAACAGCAGCGGGCGGCGGCG
GCGCCGCCGCATTTCCCTGAGCCTGGAGAACGGCGCGGACGAGCGGGCGG
CTGAAGATGCGGATGCGCCGCGCTATTCGGCCCGCGAACTGGGGGCGCGT
ATCGAGGCGGCGGAGGCGGCGGCAGCGGCAGCCCACGAAAGGTGAGAAGA
AAGCGGAAAATGGGGAACCGCGGTGAAAGCGAATGTGATCTTTGTCATCT
CGCTGCCTGAAAAGCGCCCAAAGAATTGTTAAAATTGTCACGGATCTTAT
TTTGCTTAGCGGCTGGTCGTGCGTCAGGAGCGTGGTCTCAAACTTGTCTT
GCTTCCCCCTCATCTTTCAGCTTGCACCCCTTGCACCCCTCCAAAAGGCC
TCTGCCTGCTGACTCTTTCCCCGACCTCTCTTGTCGGGCGGCCGTTTTCT
TCCGCTTCTTTCTCCTGCAATGTGCCCTTCCGCGACAGAGCGGCCCAAGA
CGCCCAGACGCGGCTGGAACAGGAGCTGACCGCGGCGCACGCCGCCGCAG
ACGAGTCGCGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1040:2781..4244-

>mRNA_P-wetherbeei_contig1040.2.1 ID=mRNA_P-wetherbeei_contig1040.2.1|Name=mRNA_P-wetherbeei_contig1040.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1008bp|location=Sequence derived from alignment at P-wetherbeei_contig1040:2781..4244- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCGACCTGAGGAAGGCGGCCCGAGGCTCGGATTTTCGGCCAGCAA
GGCAGGAAGCGATGTCGGCGCAAAGAAGCCCTCCCAGCCGCAGTATGCTA
CCGCCGTGGAGTGCCATGGCACCGCCGGCATGTCCGTCAAGAACGCCCCG
GTGGACTCGGTCGGCGTCGTGGGTGAGGGCTCCACCACCGCCGCCACTTC
CGACAGCGAGACCTCGCGTACTCCGACGCCGGCCGCCAGCGGCCTCACCC
TCGAGCTGTCTGCGCTCCTGGATACCGCCGCCGGCTCGGCGTCGGGAACC
GGGACCAGTTTTGACAGCTGCGGCGTGGGCCACGAGCGATTTTTCGAATG
TACCGACCCCATCGCGACCCAGGCCGGATCCGCTGCGAACGGCGAGGCGC
TGCGGCCTTCCGTCGCGACCGTAGAAAGCCATGCCTGCGAGAGCGCTCCC
GCTGCCTCATCGGAACGTGGTGGCAGCAAAAGCGGCGGCGGCGACGACAG
CAGCACTGACAGCGAGAGCACTCCGGGCGGCGGGGGCAGTGACGAAAGCA
CGGCCGGCGGCGGGCCTGGCGGCGAAAGCGCGGCCAACGACGGGGGCGGC
AACGATGACGTCGGCGGCGGTGGCAATGTCGCTGGCGGCAACAGCGGCGA
CAACAGTAGTAGCGACAACGGTGCCGGCGAGAACGGCGGCAGCAAAAACG
GTGGCGGTCACAAGGGCGGCGGCGGGAACGGTGGCGGCGAGAACAGCGGC
GGCGAGAATGGCGGCGACGACAACAGCAGCGGGCGGCGGCGGCGCCGCCG
CATTTCCCTGAGCCTGGAGAACGGCGCGGACGAGCGGGCGGCTGAAGATG
CGGATGCGCCGCGCTATTCGGCCCGCGAACTGGGGGCGCGTATCGAGGCG
GCGGAGGCGGCGGCAGCGGCAGCCCACGAAAGAGCGGCCCAAGACGCCCA
GACGCGGCTGGAACAGGAGCTGACCGCGGCGCACGCCGCCGCAGACGAGT
CGCGCCGC
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