mRNA_P-wetherbeei_contig1040.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1040.1.1
Unique NamemRNA_P-wetherbeei_contig1040.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1040.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1040contigP-wetherbeei_contig1040:2..2704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1329
Hectar predicted targeting categoryother localisation
Exons5
Cds size828
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1040.1.1prot_P-wetherbeei_contig1040.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1040 281..2482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.736523-UTR-P-wetherbeei_contig1040:1..2801683185867.736523-UTR-P-wetherbeei_contig1040:1..280Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1040 2..280 -
1683185867.7836695-UTR-P-wetherbeei_contig1040:2482..27041683185867.7836695-UTR-P-wetherbeei_contig1040:2482..2704Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1040 2483..2704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.7472746-CDS-P-wetherbeei_contig1040:280..4611683185867.7472746-CDS-P-wetherbeei_contig1040:280..461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 281..461 -
1683185867.7542477-CDS-P-wetherbeei_contig1040:694..8221683185867.7542477-CDS-P-wetherbeei_contig1040:694..822Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 695..822 -
1683185867.7611084-CDS-P-wetherbeei_contig1040:1203..13681683185867.7611084-CDS-P-wetherbeei_contig1040:1203..1368Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 1204..1368 -
1683185867.7682877-CDS-P-wetherbeei_contig1040:1708..18821683185867.7682877-CDS-P-wetherbeei_contig1040:1708..1882Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 1709..1882 -
1683185867.775724-CDS-P-wetherbeei_contig1040:2302..24821683185867.775724-CDS-P-wetherbeei_contig1040:2302..2482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1040 2303..2482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1040.1.1

>prot_P-wetherbeei_contig1040.1.1 ID=prot_P-wetherbeei_contig1040.1.1|Name=mRNA_P-wetherbeei_contig1040.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
MDRTVLYSPHTGNAQGDSTAAEKSLQLDLMTKEYLGYKAASQRRLDEAVE
AGKKRLDEAKVELERERSERQQALARAAEETERLSAEVGRRRGELVALEK
AEREKRAAAVLKMKGDMKALAEKQFAEANKYYRALQQSHKRVEAEAAAAA
KRADNAQLAADAAAKEATQLREQMAASQGALAATEKELKETRSKVKAAEA
VAAKAVADAQHAIEARDTAQTLAQSLMMDKTALESEKEGLRERNHELEEI
SHKLLSMVDEANAAAAAAREGQAQG*
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mRNA from alignment at P-wetherbeei_contig1040:2..2704-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1040.1.1 ID=mRNA_P-wetherbeei_contig1040.1.1|Name=mRNA_P-wetherbeei_contig1040.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2703bp|location=Sequence derived from alignment at P-wetherbeei_contig1040:2..2704- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGGAGGAGCGGCTGGCGACGACAGAAAAGAAGCTCTCGTCCCTCGCC
AGCCAGGTGCGCGCTGCTATGCATTCCGTTTTCAGGCTGCTCTCTCTTCG
TCTCCCTCTCGTCCCTTTCTTTAAAGTTCCTCTGAAATCAACTTTGTTTT
GAGGATTTCAATTAACTTGGCTGGGCGCTCGGCGGGGAGCCTCTTCCTCA
ATCAGTATCTGCAAACCGCGCAATGGACAGAACTGTGCTGTACTCCCCCC
ACACGGGGAACGCGCAGGGCGACTCGACAGCCGCGGAGAAGTCGCTGCAG
CTAGACCTCATGACGAAGGAGTACCTCGGCTATAAGGCCGCCAGCCAGCG
CCGCCTCGACGAGGCTGTCGAGGCCGGCAAGAAGCGCCTCGACGAAGCCA
AGGTGGTTCAATATGTGGAGGGAACCCCCAAACCCTAAACCCTAAGTCCA
TCACAGTCAGTCAGCGAGGGAAGAAGGGTTGGTGCTAGGGGGTGATGGCG
GCGGCGGCCGCGGCGGTGGCGGGCGACGGCAGCCGGCGGCAAGGGCTGCG
ATGGATGGCGGGTGTGGTAGTAGCGGTGGACGGTGTTGGTGGCGGTCTGC
TATGCCATGGCTGGGAAGAGGACGGCTGAAAGTAGTGGGAACAGGGTTGG
CAACAAGGGTATAATCCGATGCAATGGCGTTAGCCATGAAGTCAGGATGG
GCGGCAAATGCGCCTAGCGCATTCTTGCGGTCAAACGCCGAATCTCTTTC
GCTGCCGGGATGACTGACGCCCCTTTCGTCTTCTTCTCACAAAATTCCGC
GGCCGAACGATGCTAAATGCAGGTGGAGCTGGAGCGGGAGCGCAGCGAGA
GGCAGCAGGCGCTGGCACGGGCCGCCGAGGAGACGGAGCGGCTGTCGGCA
GAGGTGGGGCGGCGTCGCGGGGAGCTCGTGGCGCTTGAGAAGGCAGAGCG
GGAGAAGCGTGCCGCTGCCGTCCTCAAGATGAAGGGCGACATGAAGGTGT
GTTTGGGGGAGAAGGGTTGGCACGGTTGGGCATTGGGCCACAATAGGCCA
CGAAAGAGGGACTGAATGGCGGGTGGAGCGGACCGGCAGCGGCCGGTGGG
GGGTTTAGTGGCTCGCACTGCCTTGAGGTTGGTGTGCATTTAGAGGTGCA
ATTCCACGGAGGAAGCAGCTAGGTGCTTTATTGACACGGCGTTTTTGCCG
CTTGAGTGCGCGTCCTCAGCCACATTAGGTGACCTTGTCTAACCTCCCCT
CCGTCCGTTTCTCTCTCCCACCCTCACTTCCTTTGGGGTTGACCGTCACG
CGGCCAACGCCGACCGGGGACGAACTGAACCGGCAGGCGCTGGCGGAGAA
GCAGTTCGCAGAGGCCAACAAGTACTACCGGGCGCTGCAGCAGAGCCATA
AACGGGTCGAGGCAGAGGCCGCCGCCGCCGCCAAGCGGGCCGACAATGCA
CAGCTGGCCGCCGATGCCGCTGCCAAAGAGGCCACGCAGCTTCGGGAGCA
GGTGCGGCGAATGAGCGGGATGACCCTTTGGGGTGCGTCGGGGGGGTGCG
TATGGCAGGCCCGTTGGGGCGGGGCGGGCGGGGGCGAGGCGGGGCCGTCT
CTGATGAAGGGGACGACGGCAGCGGCAAACAATCGATCGTTGTGAAGCAC
AGACCTTGTGCATCCGAGTGCCGGTGTGGCGGCAAGACCTCCGTTCGTTT
CGTGGTCGGGTGATTTGGTTCGTTCTCTTTCGCACGCGGTGGCCGGGAGG
ATTTGATTGATTATGGCAAGCCGTTAGTACCATGGGCCATGCCTCCGACG
CTTCTCTCCAATTTACACTTGCGTCTCTTCGGACTTTGTCCTTTCCCGCC
TTCCGTTCTTCTCCTCGCCATCCTCCCGGCAGATGGCGGCGTCGCAGGGA
GCGCTGGCGGCGACAGAGAAGGAGCTTAAGGAGACGCGCAGCAAGGTTAA
AGCCGCCGAGGCGGTCGCCGCCAAAGCCGTTGCGGACGCCCAGCACGCCA
TCGAGGCCAGGTAAGCAGTGCGGCGCGGCAGGGCAGGCCACTTTACCTTT
GCGTGCGGCGGAATGGATGGGATGTGTTGAGAGACCCTGAAAACATGCTG
TCTTACTTCAGTCTGTGTTTACCTCGGTATGTCCTTGCAAGCCCTCTTTC
CTATCCATGCGATTAAATAAAATTTCTTCAAAATGCCTTTGTTTCCTGTG
CCTTGGTCTTCATTTTCCTGGATGGTCTTGTGTCGGGCGGCAGAGACACG
GCCCAGACGCTGGCCCAGTCGTTGATGATGGATAAGACGGCGCTCGAGTC
AGAGAAGGAGGGCCTTCGGGAGCGCAATCACGAGCTTGAAGAGATCTCCC
ACAAGCTGCTCTCCATGGTCGACGAAGCCAACGCCGCCGCCGCCGCTGCA
AGGGAAGGCCAGGCACAGGGATAGGCCTTGAGGGGGGACCATAACGGTTA
AAACATGTTGGCGCCAGCCGCCGAAAGGCACCACACCACTTGCAGTCTTA
GTTGAGAACGAGCTGCTCCGGACTGGAAGGTTTTCTGCTGCCGCCACGGT
ACGTTTTTCGCCCGGCAGAGACCATATGGAGGCGACATTGGCGGCGGCGG
CGGCGATGGCGGCAGCCGCGGTGGCGATCCGAGGCGGCTGCGGCCCGCGG
CGGCGGCGTCCATCGAGCCAGCCTTGGCGTTGGCAGGTGGACCATGGGGC
CGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1040:2..2704-

>mRNA_P-wetherbeei_contig1040.1.1 ID=mRNA_P-wetherbeei_contig1040.1.1|Name=mRNA_P-wetherbeei_contig1040.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig1040:2..2704- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAGAACTGTGCTGTACTCCCCCCACACGGGGAACGCGCAGGGCGA
CTCGACAGCCGCGGAGAAGTCGCTGCAGCTAGACCTCATGACGAAGGAGT
ACCTCGGCTATAAGGCCGCCAGCCAGCGCCGCCTCGACGAGGCTGTCGAG
GCCGGCAAGAAGCGCCTCGACGAAGCCAAGGTGGAGCTGGAGCGGGAGCG
CAGCGAGAGGCAGCAGGCGCTGGCACGGGCCGCCGAGGAGACGGAGCGGC
TGTCGGCAGAGGTGGGGCGGCGTCGCGGGGAGCTCGTGGCGCTTGAGAAG
GCAGAGCGGGAGAAGCGTGCCGCTGCCGTCCTCAAGATGAAGGGCGACAT
GAAGGCGCTGGCGGAGAAGCAGTTCGCAGAGGCCAACAAGTACTACCGGG
CGCTGCAGCAGAGCCATAAACGGGTCGAGGCAGAGGCCGCCGCCGCCGCC
AAGCGGGCCGACAATGCACAGCTGGCCGCCGATGCCGCTGCCAAAGAGGC
CACGCAGCTTCGGGAGCAGATGGCGGCGTCGCAGGGAGCGCTGGCGGCGA
CAGAGAAGGAGCTTAAGGAGACGCGCAGCAAGGTTAAAGCCGCCGAGGCG
GTCGCCGCCAAAGCCGTTGCGGACGCCCAGCACGCCATCGAGGCCAGAGA
CACGGCCCAGACGCTGGCCCAGTCGTTGATGATGGATAAGACGGCGCTCG
AGTCAGAGAAGGAGGGCCTTCGGGAGCGCAATCACGAGCTTGAAGAGATC
TCCCACAAGCTGCTCTCCATGGTCGACGAAGCCAACGCCGCCGCCGCCGC
TGCAAGGGAAGGCCAGGCACAGGGATAG
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