mRNA_P-wetherbeei_contig104.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig104.8.1
Unique NamemRNA_P-wetherbeei_contig104.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A3C0TS57_9PROT (BolA family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TS57_9PROT)

HSP 1 Score: 134 bits (338), Expect = 8.260e-40
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAMQAAEIEQLIR  LPDA+VRIEDLRGDGDHYAA+V SAAFKGK+RVQQHQMVYAAL+GRMGGELHAL L TSVP+
Sbjct:    1 MAMQAAEIEQLIRQGLPDAEVRIEDLRGDGDHYAAYVRSAAFKGKTRVQQHQMVYAALQGRMGGELHALMLHTSVPE 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: UPI001A071E54 (BolA family transcriptional regulator n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A071E54)

HSP 1 Score: 132 bits (333), Expect = 4.780e-39
Identity = 62/77 (80.52%), Postives = 76/77 (98.70%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAM+A+EIE+LI++ALPDA++RIEDLRGDGDHY+A+V+SA+FKGK+RVQQHQMVYAAL+GRMGGELHALALQT+ PD
Sbjct:    1 MAMEASEIERLIKEALPDAEIRIEDLRGDGDHYSAYVSSASFKGKNRVQQHQMVYAALQGRMGGELHALALQTAAPD 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A7C2FH91_9PROT (BolA family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C2FH91_9PROT)

HSP 1 Score: 132 bits (331), Expect = 9.660e-39
Identity = 64/77 (83.12%), Postives = 73/77 (94.81%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAM A EIE+LI++++PDA+VRIEDLRGDGDHYAA+V SAAFKGKSRVQQHQMVYAALKGRMGGELHALALQT+ P+
Sbjct:    1 MAMDANEIERLIKESIPDAEVRIEDLRGDGDHYAAYVQSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTTAPE 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A2S6QXG7_9PROT (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A2S6QXG7_9PROT)

HSP 1 Score: 131 bits (330), Expect = 1.450e-38
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            M+M AAEIE LIR+A+PDAQVRIEDLRGDGDHYAA+VTS +FKGKSRVQQHQ+VY ALKG MGG+LHALALQTSVP+
Sbjct:    1 MSMDAAEIEHLIREAIPDAQVRIEDLRGDGDHYAAYVTSQSFKGKSRVQQHQLVYQALKGAMGGQLHALALQTSVPE 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A6C1SWK5_9PROT (BolA family transcriptional regulator n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6C1SWK5_9PROT)

HSP 1 Score: 130 bits (328), Expect = 3.020e-38
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAM+AAEIE+LIR+ALPDA V IEDLRGDGDHYAA VTS AF GKSRVQQHQMVY ALKGRMGGELHALALQT+VP+
Sbjct:    1 MAMEAAEIERLIREALPDAVVTIEDLRGDGDHYAALVTSRAFAGKSRVQQHQMVYQALKGRMGGELHALALQTAVPE 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A1H4XTK2_9HYPH (Transcriptional regulator, BolA protein family n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1H4XTK2_9HYPH)

HSP 1 Score: 129 bits (324), Expect = 1.130e-37
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAMQA EIE+LIR+ALPDAQV I+DL GDGDHYAA V SAAFKGKSRVQQHQ+VYAALKG+MGG LHALALQTSVPD
Sbjct:    1 MAMQANEIERLIREALPDAQVEIKDLAGDGDHYAATVVSAAFKGKSRVQQHQIVYAALKGQMGGVLHALALQTSVPD 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A7Y6YWT5_9HYPH (BolA family transcriptional regulator n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A7Y6YWT5_9HYPH)

HSP 1 Score: 129 bits (324), Expect = 1.340e-37
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAM+A EIEQLI+D LP A+VRIEDLRGDGDHYAA+V S AF+GK+RVQQHQMVYAALKG+MGG+LHALALQTS PD
Sbjct:    1 MAMEAHEIEQLIKDGLPGAEVRIEDLRGDGDHYAAYVVSDAFEGKNRVQQHQMVYAALKGKMGGDLHALALQTSTPD 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A418VYC7_9PROT (BolA family transcriptional regulator n=1 Tax=Azospirillum cavernae TaxID=2320860 RepID=A0A418VYC7_9PROT)

HSP 1 Score: 129 bits (323), Expect = 1.700e-37
Identity = 64/77 (83.12%), Postives = 70/77 (90.91%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAM+AA IE+LI+D +PDA V I DLRGDGDHYAA VTSAAFKGKSRVQQHQMVYAAL+GRMGGELHALAL T+VPD
Sbjct:    1 MAMEAATIEKLIKDGIPDAAVEIADLRGDGDHYAALVTSAAFKGKSRVQQHQMVYAALQGRMGGELHALALTTAVPD 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A850KGW1_9HYPH (BolA family transcriptional regulator n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A850KGW1_9HYPH)

HSP 1 Score: 129 bits (323), Expect = 1.910e-37
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            MAM+A EIEQLIRD LP A VRIEDLRGDGDHYAA+V SAAF+GKSRVQQHQMVY+ L+G+MGG+LHALALQTS PD
Sbjct:    1 MAMEAHEIEQLIRDGLPGADVRIEDLRGDGDHYAAYVVSAAFEGKSRVQQHQMVYSTLQGKMGGDLHALALQTSTPD 77          
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Match: A0A2E4XTR3_9PROT (BolA family transcriptional regulator n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E4XTR3_9PROT)

HSP 1 Score: 128 bits (321), Expect = 3.430e-37
Identity = 60/77 (77.92%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQHQMVYAALKGRMGGELHALALQTSVPD 231
            M M A EIEQ+I++A+PDA+VRI+DLRGDGDHYAAF++S+AFKGK+RVQQHQMVYAAL+GRMG ELHALALQTS P+
Sbjct:    1 MPMSAGEIEQMIKEAMPDAEVRIDDLRGDGDHYAAFISSSAFKGKTRVQQHQMVYAALQGRMGNELHALALQTSAPE 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig104.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TS57_9PROT8.260e-4087.01BolA family transcriptional regulator n=1 Tax=Alph... [more]
UPI001A071E544.780e-3980.52BolA family transcriptional regulator n=1 Tax=Prot... [more]
A0A7C2FH91_9PROT9.660e-3983.12BolA family transcriptional regulator n=1 Tax=Alph... [more]
A0A2S6QXG7_9PROT1.450e-3883.12Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6C1SWK5_9PROT3.020e-3885.71BolA family transcriptional regulator n=1 Tax=Rhod... [more]
A0A1H4XTK2_9HYPH1.130e-3785.71Transcriptional regulator, BolA protein family n=2... [more]
A0A7Y6YWT5_9HYPH1.340e-3781.82BolA family transcriptional regulator n=1 Tax=Meth... [more]
A0A418VYC7_9PROT1.700e-3783.12BolA family transcriptional regulator n=1 Tax=Azos... [more]
A0A850KGW1_9HYPH1.910e-3781.82BolA family transcriptional regulator n=1 Tax=Meth... [more]
A0A2E4XTR3_9PROT3.430e-3777.92BolA family transcriptional regulator n=3 Tax=Alph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig104contigP-wetherbeei_contig104:5054..5287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1528106.JRJE01000029_gene322
PFAMsBolA
Model size234
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.31e-38
EggNOG OGsCOG0271@1|root,COG0271@2|Bacteria,1R3MM@1224|Proteobacteria,2UBUW@28211|Alphaproteobacteria,2JTE0@204441|Rhodospirillales
DescriptionBelongs to the BolA IbaG family
Cds size234
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.5038927-CDS-P-wetherbeei_contig104:5053..52871683185867.5038927-CDS-P-wetherbeei_contig104:5053..5287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig104 5054..5287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig104.8.1prot_P-wetherbeei_contig104.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig104 5054..5287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig104.8.1

>prot_P-wetherbeei_contig104.8.1 ID=prot_P-wetherbeei_contig104.8.1|Name=mRNA_P-wetherbeei_contig104.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MAMQAAEIEQLIRDALPDAQVRIEDLRGDGDHYAAFVTSAAFKGKSRVQQ
HQMVYAALKGRMGGELHALALQTSVPD*
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mRNA from alignment at P-wetherbeei_contig104:5054..5287-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig104.8.1 ID=mRNA_P-wetherbeei_contig104.8.1|Name=mRNA_P-wetherbeei_contig104.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig104:5054..5287- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCATGCAGGCGGCTGAAATTGAACAATTGATCCGTGACGCCCTGCC TGATGCACAGGTGCGCATCGAAGATCTACGCGGCGATGGCGACCATTACG CGGCCTTTGTCACCTCTGCCGCATTTAAAGGCAAATCACGGGTGCAGCAG CATCAGATGGTTTATGCCGCCTTGAAAGGCCGCATGGGGGGCGAATTACA CGCGCTGGCGTTACAGACCAGCGTGCCGGATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig104:5054..5287-

>mRNA_P-wetherbeei_contig104.8.1 ID=mRNA_P-wetherbeei_contig104.8.1|Name=mRNA_P-wetherbeei_contig104.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig104:5054..5287- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCATGCAGGCGGCTGAAATTGAACAATTGATCCGTGACGCCCTGCC
TGATGCACAGGTGCGCATCGAAGATCTACGCGGCGATGGCGACCATTACG
CGGCCTTTGTCACCTCTGCCGCATTTAAAGGCAAATCACGGGTGCAGCAG
CATCAGATGGTTTATGCCGCCTTGAAAGGCCGCATGGGGGGCGAATTACA
CGCGCTGGCGTTACAGACCAGCGTGCCGGATTAG
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