mRNA_P-wetherbeei_contig104.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig104.7.1
Unique NamemRNA_P-wetherbeei_contig104.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A7C4IVL8_9DELT (Plasmid maintenance system killer protein n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A7C4IVL8_9DELT)

HSP 1 Score: 148 bits (373), Expect = 1.220e-44
Identity = 69/93 (74.19%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MIVSFRDKRT+E A+G R+KAF+  +  A+LKLDQLESAT L DL+LPGNRLEAL+GDR+GQYSIRINDQ R+CFE PKG+ GP+NVEI+DYH
Sbjct:    1 MIVSFRDKRTKELAEGNRVKAFSGFEHKAELKLDQLESATSLLDLSLPGNRLEALKGDRQGQYSIRINDQWRICFEWPKGSPGPINVEIVDYH 93
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BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A534DXQ1_9GAMM (Plasmid maintenance system killer protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534DXQ1_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 5.960e-44
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            +I+S+RDKRTR FA+GKR+KAF  I R A+++LDQLE+AT L DL LPGNRLEAL+GDRKGQYSIRINDQ R+CFE PKG KGP NVEI+DYH
Sbjct:    7 VILSYRDKRTRSFAEGKRVKAFGGIARNAEMRLDQLEAATSLLDLDLPGNRLEALKGDRKGQYSIRINDQWRVCFEWPKGGKGPSNVEIVDYH 99
[Close]
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A534EG24_9GAMM (Plasmid maintenance system killer protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534EG24_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 4.090e-43
Identity = 69/93 (74.19%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MI  FRDKRTR FA G+R+KAF  I R    KLDQL++AT L DL LPGNRLEALRGDRKGQYSIR+NDQ R+CFE PKGAKGPVNVE++DYH
Sbjct:    1 MIGGFRDKRTRSFAAGQRVKAFDGIARKLSAKLDQLDAATSLRDLDLPGNRLEALRGDRKGQYSIRVNDQWRVCFEWPKGAKGPVNVEVVDYH 93
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BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: UPI0019AA0E08 (Type II toxin-antitoxin system RelE/ParE family toxin n=1 Tax=Aeromicrobium sp. TaxID=1871063 RepID=UPI0019AA0E08)

HSP 1 Score: 141 bits (356), Expect = 4.770e-42
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MI+ +RDKRTR+FADGKR+KAF  I   A++KLDQL++AT L DLALPGNRLE+L+GDRKGQYSIRINDQ R+CFE P  + GP NVEI+DYH
Sbjct:    1 MILRYRDKRTRDFADGKRVKAFDGIHHKAEIKLDQLDAATNLGDLALPGNRLESLKGDRKGQYSIRINDQWRVCFEWPDKSPGPTNVEIVDYH 93
[Close]
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A1Q7EIB3_9BACT (Plasmid maintenance system killer protein n=1 Tax=Candidatus Rokubacteria bacterium 13_1_40CM_69_27 TaxID=1805367 RepID=A0A1Q7EIB3_9BACT)

HSP 1 Score: 141 bits (355), Expect = 6.990e-42
Identity = 69/94 (73.40%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLA-LPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MIVS+R+KRTREFA GKR+KAF+ I+R+A +KLD+L++A  L DLA LPGNRLEAL GDRKGQYSIRINDQ R+CFE P+G+ GPVNVEI+DYH
Sbjct:    1 MIVSYRNKRTREFAAGKRVKAFSGIERSAQVKLDRLDAAVSLKDLAALPGNRLEALFGDRKGQYSIRINDQWRICFEWPEGSAGPVNVEIVDYH 94
[Close]
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A521WBM2_9GAMM (Plasmid maintenance system killer protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521WBM2_9GAMM)

HSP 1 Score: 140 bits (354), Expect = 9.930e-42
Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLA-LPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MI+S RD+ TR+FADGKR+KAF  I + A +KLDQL+SA  L DLA LPGNRLEAL+GDRKGQYSIRINDQ R+CFE PKG++GP+NVEI+DYH
Sbjct:    1 MILSCRDQHTRDFADGKRVKAFDGIAQKASMKLDQLDSAITLEDLAALPGNRLEALKGDRKGQYSIRINDQWRICFEWPKGSRGPINVEIVDYH 94
[Close]
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A1M7PMX6_9BURK (Proteic killer suppression protein n=1 Tax=Rhizobacter sp. OV335 TaxID=1500264 RepID=A0A1M7PMX6_9BURK)

HSP 1 Score: 140 bits (353), Expect = 1.370e-41
Identity = 66/93 (70.97%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MIVS+RDKRTR FA+G R+KAF+   R A L+LDQL++AT + DL LPGNRLEAL+GDRKGQYS+RINDQ R+CFE  KGA+GP NVEI+DYH
Sbjct:    1 MIVSYRDKRTRTFAEGNRVKAFSGFDRKAALRLDQLDAATSVLDLDLPGNRLEALKGDRKGQYSVRINDQWRICFEWKKGARGPSNVEIVDYH 93
[Close]
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A1F4DNL0_9PROT (Plasmid maintenance system killer protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DNL0_9PROT)

HSP 1 Score: 140 bits (352), Expect = 2.000e-41
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDL-ALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MIVSF+DKRTREFADGK  KAF+   R A++KLD+LE+AT + DL ALPGNRLEAL+GDRKGQYSIRINDQ R+CFE P  + GPVNVEI+DYH
Sbjct:    1 MIVSFKDKRTREFADGKYTKAFSGFARQAEMKLDRLEAATTVQDLGALPGNRLEALKGDRKGQYSIRINDQWRICFEWPSRSPGPVNVEIVDYH 94
[Close]
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: A0A2M6YK34_9DELT (Plasmid maintenance system killer protein n=2 Tax=unclassified Syntrophobacteraceae TaxID=869804 RepID=A0A2M6YK34_9DELT)

HSP 1 Score: 138 bits (348), Expect = 7.920e-41
Identity = 66/93 (70.97%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MIVSF DKRTR FA+G RI+AF+  +R A+LKLDQL++A  L DL LPGNRLEAL+G+R+GQYSIRINDQ R+CFE PKG+ GP+NV+IIDYH
Sbjct:    1 MIVSFGDKRTRHFAEGNRIQAFSGFERKAELKLDQLDAAMSLLDLDLPGNRLEALKGNRQGQYSIRINDQWRICFEWPKGSAGPLNVQIIDYH 93
[Close]
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Match: UPI001474BDBF (type II toxin-antitoxin system RelE/ParE family toxin n=1 Tax=Tautonia rosea TaxID=2728037 RepID=UPI001474BDBF)

HSP 1 Score: 138 bits (348), Expect = 7.920e-41
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    7 MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGNRLEALRGDRKGQYSIRINDQ*RMCFE*PKGAKGPVNVEIIDYH 285
            MIVS+ DKRTR FA+G+R+KAFA I+R A ++LD+LE+AT L DL LPGNRLEAL+GDRKG +SIRINDQ R+CFE P G+ GP NVEI+DYH
Sbjct:    1 MIVSYGDKRTRSFAEGRRVKAFAGIERKAQMRLDRLEAATSLLDLDLPGNRLEALKGDRKGLFSIRINDQWRICFEWPNGSPGPCNVEIVDYH 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig104.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4IVL8_9DELT1.220e-4474.19Plasmid maintenance system killer protein n=1 Tax=... [more]
A0A534DXQ1_9GAMM5.960e-4474.19Plasmid maintenance system killer protein n=1 Tax=... [more]
A0A534EG24_9GAMM4.090e-4374.19Plasmid maintenance system killer protein n=1 Tax=... [more]
UPI0019AA0E084.770e-4270.97Type II toxin-antitoxin system RelE/ParE family to... [more]
A0A1Q7EIB3_9BACT6.990e-4273.40Plasmid maintenance system killer protein n=1 Tax=... [more]
A0A521WBM2_9GAMM9.930e-4272.34Plasmid maintenance system killer protein n=1 Tax=... [more]
A0A1M7PMX6_9BURK1.370e-4170.97Proteic killer suppression protein n=1 Tax=Rhizoba... [more]
A0A1F4DNL0_9PROT2.000e-4173.40Plasmid maintenance system killer protein n=1 Tax=... [more]
A0A2M6YK34_9DELT7.920e-4170.97Plasmid maintenance system killer protein n=2 Tax=... [more]
UPI001474BDBF7.920e-4169.89type II toxin-antitoxin system RelE/ParE family to... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig104contigP-wetherbeei_contig104:4715..4999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1298867.AUES01000002_gene1526
PFAMsHigB-like_toxin
Model size285
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07334
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.73e-24
EggNOG OGsCOG3549@1|root,COG3549@2|Bacteria,1MZKX@1224|Proteobacteria,2UBQF@28211|Alphaproteobacteria,3K02Z@41294|Bradyrhizobiaceae
DescriptionRelE-like toxin of type II toxin-antitoxin system HigB
Cds size213
COG categoryS
BRITEko00000,ko02048
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.467129-UTR-P-wetherbeei_contig104:4714..47801683185867.467129-UTR-P-wetherbeei_contig104:4714..4780Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig104 4715..4780 -
1683185867.4823358-UTR-P-wetherbeei_contig104:4993..49991683185867.4823358-UTR-P-wetherbeei_contig104:4993..4999Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig104 4994..4999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.4753377-CDS-P-wetherbeei_contig104:4780..49931683185867.4753377-CDS-P-wetherbeei_contig104:4780..4993Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig104 4781..4993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig104.7.1prot_P-wetherbeei_contig104.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig104 4781..4993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig104.7.1

>prot_P-wetherbeei_contig104.7.1 ID=prot_P-wetherbeei_contig104.7.1|Name=mRNA_P-wetherbeei_contig104.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MIVSFRDKRTREFADGKRIKAFAAIQRAADLKLDQLESATELHDLALPGN
RLEALRGDRKGQYSIRINDQ*
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mRNA from alignment at P-wetherbeei_contig104:4715..4999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig104.7.1 ID=mRNA_P-wetherbeei_contig104.7.1|Name=mRNA_P-wetherbeei_contig104.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig104:4715..4999- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGAATGATTGTTAGCTTCCGGGATAAGCGCACCCGCGAATTTGCTGA
TGGAAAACGCATAAAAGCTTTTGCGGCCATCCAGAGAGCTGCTGATTTGA
AACTCGATCAGCTTGAATCCGCTACTGAATTACATGACCTCGCCTTACCC
GGCAATCGCCTTGAGGCGCTGCGCGGTGACCGTAAGGGCCAATATAGCAT
ACGCATCAATGACCAGTGACGGATGTGTTTTGAATGACCCAAGGGGGCAA
AAGGCCCCGTTAATGTAGAGATTATCGACTATCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig104:4715..4999-

>mRNA_P-wetherbeei_contig104.7.1 ID=mRNA_P-wetherbeei_contig104.7.1|Name=mRNA_P-wetherbeei_contig104.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig104:4715..4999- (Phaeothamnion wetherbeei SAG_119_79)
ATGATTGTTAGCTTCCGGGATAAGCGCACCCGCGAATTTGCTGATGGAAA
ACGCATAAAAGCTTTTGCGGCCATCCAGAGAGCTGCTGATTTGAAACTCG
ATCAGCTTGAATCCGCTACTGAATTACATGACCTCGCCTTACCCGGCAAT
CGCCTTGAGGCGCTGCGCGGTGACCGTAAGGGCCAATATAGCATACGCAT
CAATGACCAGTGA
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