mRNA_P-wetherbeei_contig104.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig104.6.1
Unique NamemRNA_P-wetherbeei_contig104.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A351AY81_9DELT (Addiction module antidote protein, HigA family (Fragment) n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A351AY81_9DELT)

HSP 1 Score: 140 bits (354), Expect = 7.130e-42
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIK 261
            M R+ IHPG HL EQL ELDM AAELARQL VPTNRITEIL G+RA+TGDTALRLGHFF TS +FWLNLQKLYELRLAE+K G +IK
Sbjct:    1 MGRSAIHPGEHLAEQLEELDMSAAELARQLNVPTNRITEILNGQRAVTGDTALRLGHFFGTSPEFWLNLQKLYELRLAEQKSGEIIK 87
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BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A521WBN0_9GAMM (Addiction module antidote protein, HigA family n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521WBN0_9GAMM)

HSP 1 Score: 139 bits (349), Expect = 6.470e-41
Identity = 66/92 (71.74%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M+R  IHPG HL EQL EL M AAELARQ++VPTNR+T+IL G+RAITGDTALRLGHFF T+A+FWLNLQKLYELR+AER+ G  ++ LP+L
Sbjct:    1 MARMAIHPGEHLAEQLEELSMSAAELARQIKVPTNRVTQILNGQRAITGDTALRLGHFFGTTAEFWLNLQKLYELRIAERESGKAVEALPRL 92
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BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A7C4IVK5_9DELT (Addiction module antidote protein, HigA family n=2 Tax=root TaxID=1 RepID=A0A7C4IVK5_9DELT)

HSP 1 Score: 138 bits (347), Expect = 1.570e-40
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M R PIHPG HL EQL EL M AAELARQL+VPTNRIT IL G+RA+TGDTALRLGHFF TSA+FW+NLQKLYELR+AE++ G  I+ LP L
Sbjct:    1 MGRKPIHPGEHLAEQLEELGMSAAELARQLRVPTNRITAILNGQRAVTGDTALRLGHFFGTSAEFWMNLQKLYELRIAEQETGNTIERLPTL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A3N5UAM9_9DELT (Addiction module antidote protein, HigA family n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3N5UAM9_9DELT)

HSP 1 Score: 138 bits (347), Expect = 1.570e-40
Identity = 69/92 (75.00%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M RT IHPG HL EQL EL M AAELARQL+VPTNRIT IL G+RAITGDTALRLGHFF TSA+FW+NLQKLYELR+AE+K G  +  LP L
Sbjct:    1 MGRTAIHPGEHLAEQLEELGMSAAELARQLKVPTNRITAILNGQRAITGDTALRLGHFFGTSAEFWMNLQKLYELRIAEQKTGNTVGALPTL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A1F4ASZ1_9PROT (Addiction module antidote protein, HigA family n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 TaxID=1797486 RepID=A0A1F4ASZ1_9PROT)

HSP 1 Score: 138 bits (347), Expect = 1.570e-40
Identity = 70/92 (76.09%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M+RT IHPG HL EQL EL M AAEL RQL VPTNRIT IL G+RAITGD+ALRL HFF TSA+FWLNLQKLYELRLAE K GA I+ LP+L
Sbjct:    1 MARTAIHPGEHLAEQLKELGMSAAELGRQLDVPTNRITGILNGQRAITGDSALRLAHFFGTSAEFWLNLQKLYELRLAEAKAGATIRRLPRL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A534DN71_9GAMM (HigA family addiction module antidote protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534DN71_9GAMM)

HSP 1 Score: 137 bits (346), Expect = 1.590e-40
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M+R  IHPG HL EQL  L M AA LARQL+VPTNRIT IL G+RAITGDTALRLGHFF TSA+FWLNLQK+YELR+AER++GA +K LP+L
Sbjct:    1 MTRAAIHPGEHLAEQLEALGMSAAALARQLKVPTNRITHILNGQRAITGDTALRLGHFFGTSAEFWLNLQKIYELRVAEREVGADVKNLPRL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A1F2RBP5_9BACT (Addiction module antidote protein, HigA family n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 TaxID=1797180 RepID=A0A1F2RBP5_9BACT)

HSP 1 Score: 137 bits (346), Expect = 1.750e-40
Identity = 70/92 (76.09%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M RTPIHPG HL E+L  L M AA+LARQL+VPTNRITEIL G+RAITGDTALRL HFF TSA FWLNLQ LY+LRLAE K G  IKTLP L
Sbjct:    1 MGRTPIHPGEHLAEELEALHMSAAQLARQLRVPTNRITEILNGQRAITGDTALRLAHFFGTSAQFWLNLQSLYDLRLAELKAGKSIKTLPTL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A521W451_9GAMM (Addiction module antidote protein, HigA family n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A521W451_9GAMM)

HSP 1 Score: 137 bits (346), Expect = 2.220e-40
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M+RT IHPG HL EQL EL M AAEL RQL+VPTNRIT IL G+RA+TGD+ALRL HFF TSA+FWLNLQK+YELR+AE+K+G  I++LPKL
Sbjct:    1 MARTAIHPGEHLAEQLKELGMSAAELGRQLKVPTNRITGILNGQRAVTGDSALRLAHFFGTSAEFWLNLQKVYELRVAEQKVGVTIRSLPKL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A524PYG1_9GAMM (Addiction module antidote protein, HigA family n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A524PYG1_9GAMM)

HSP 1 Score: 137 bits (344), Expect = 4.490e-40
Identity = 67/92 (72.83%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M+R+ IHPG HL EQL EL M AAEL RQL+VPTNRIT +L G RA+TGDTALR GHFF TSA+FWLNLQKLYELRLAE+K GA +++LP L
Sbjct:    1 MARSVIHPGEHLAEQLTELGMSAAELGRQLKVPTNRITGVLNGTRAVTGDTALRRGHFFGTSAEFWLNLQKLYELRLAEQKAGATVRSLPTL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Match: A0A1F2TE13_9BACT (Addiction module antidote protein, HigA family n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 TaxID=1797178 RepID=A0A1F2TE13_9BACT)

HSP 1 Score: 136 bits (343), Expect = 6.370e-40
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    1 MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGDTALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL 276
            M+RT IHPG HL EQL EL+M AAEL RQL+VPTNRIT IL G+RAITGD+ALRL HFF TSA+FWLNLQKLYELRLAE + GA I+ LP L
Sbjct:    1 MARTAIHPGEHLAEQLRELEMSAAELGRQLKVPTNRITGILNGQRAITGDSALRLAHFFGTSAEFWLNLQKLYELRLAEAQAGATIRRLPTL 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig104.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A351AY81_9DELT7.130e-4279.31Addiction module antidote protein, HigA family (Fr... [more]
A0A521WBN0_9GAMM6.470e-4171.74Addiction module antidote protein, HigA family n=1... [more]
A0A7C4IVK5_9DELT1.570e-4073.91Addiction module antidote protein, HigA family n=2... [more]
A0A3N5UAM9_9DELT1.570e-4075.00Addiction module antidote protein, HigA family n=1... [more]
A0A1F4ASZ1_9PROT1.570e-4076.09Addiction module antidote protein, HigA family n=1... [more]
A0A534DN71_9GAMM1.590e-4073.91HigA family addiction module antidote protein n=1 ... [more]
A0A1F2RBP5_9BACT1.750e-4076.09Addiction module antidote protein, HigA family n=1... [more]
A0A521W451_9GAMM2.220e-4072.83Addiction module antidote protein, HigA family n=1... [more]
A0A524PYG1_9GAMM4.490e-4072.83Addiction module antidote protein, HigA family n=1... [more]
A0A1F2TE13_9BACT6.370e-4075.00Addiction module antidote protein, HigA family n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig104contigP-wetherbeei_contig104:4428..4703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog880072.Desac_0145
PFAMsHTH_3
Model size276
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K21498
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.82e-40
EggNOG OGsCOG3093@1|root,COG3093@2|Bacteria,1N76J@1224|Proteobacteria,42VQB@68525|delta/epsilon subdivisions,2WRF4@28221|Deltaproteobacteria
DescriptionTIGRFAM addiction module antidote protein, HigA family
Cds size276
COG categoryK
BRITEko00000,ko02048
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.4369226-CDS-P-wetherbeei_contig104:4427..47031683185867.4369226-CDS-P-wetherbeei_contig104:4427..4703Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig104 4428..4703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig104.6.1prot_P-wetherbeei_contig104.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig104 4428..4703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig104.6.1

>prot_P-wetherbeei_contig104.6.1 ID=prot_P-wetherbeei_contig104.6.1|Name=mRNA_P-wetherbeei_contig104.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MSRTPIHPGAHLEEQLVELDMRAAELARQLQVPTNRITEILRGERAITGD
TALRLGHFFDTSADFWLNLQKLYELRLAERKMGAVIKTLPKL
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mRNA from alignment at P-wetherbeei_contig104:4428..4703-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig104.6.1 ID=mRNA_P-wetherbeei_contig104.6.1|Name=mRNA_P-wetherbeei_contig104.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig104:4428..4703- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGAACACCCATTCATCCCGGCGCGCATCTTGAAGAACAGCTTGT
AGAGCTTGACATGCGCGCCGCTGAACTGGCCCGTCAACTGCAAGTGCCTA
CCAACCGGATAACTGAAATTCTGCGCGGAGAACGGGCGATTACCGGCGAC
ACAGCTTTGCGGCTGGGGCATTTCTTTGACACCAGCGCTGATTTTTGGCT
AAATCTGCAAAAGCTTTATGAACTGAGACTTGCCGAGCGTAAAATGGGTG
CGGTCATCAAGACCTTACCAAAACTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig104:4428..4703-

>mRNA_P-wetherbeei_contig104.6.1 ID=mRNA_P-wetherbeei_contig104.6.1|Name=mRNA_P-wetherbeei_contig104.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig104:4428..4703- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCCGAACACCCATTCATCCCGGCGCGCATCTTGAAGAACAGCTTGT
AGAGCTTGACATGCGCGCCGCTGAACTGGCCCGTCAACTGCAAGTGCCTA
CCAACCGGATAACTGAAATTCTGCGCGGAGAACGGGCGATTACCGGCGAC
ACAGCTTTGCGGCTGGGGCATTTCTTTGACACCAGCGCTGATTTTTGGCT
AAATCTGCAAAAGCTTTATGAACTGAGACTTGCCGAGCGTAAAATGGGTG
CGGTCATCAAGACCTTACCAAAACTG
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