mRNA_P-wetherbeei_contig104.13.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig104.13.1
Unique NamemRNA_P-wetherbeei_contig104.13.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: A0A3C0TUB3_9PROT (NADH-ubiquinone oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUB3_9PROT)

HSP 1 Score: 330 bits (847), Expect = 9.740e-111
Identity = 161/281 (57.30%), Postives = 213/281 (75.80%), Query Frame = 1
Query:    1 RIAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAHGEGVAGIMLHPAMIYGGADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRDTGAEPIIIAGPAPLSYAEIIAACAGAAGRRVRIAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLARMRRAGDL 843
            R+A+IGATGNVGRAL  AL++ GA+++T+AR  +RF+ LG+   Q ALDLD+DGP L + L   DC INVAH ++T  II ALP P  RLITLGSTRKF++FPD+K A +++AE A+  GV G++LHP MIYGG DNNI R++RI+R  P +P+P AG +L+QPIHRDDVV+ L+AAI ++    P++IAG   LSYA ++ AC  A GR V+I + P+  MR+LA ++++ PG P+V  DEV RLLEDKAFDI  MQ RLGV+PCTF+EGL RMR AG++
Sbjct:    5 RVAIIGATGNVGRALAPALLERGAKLVTIARRAERFRFLGYGTAQVALDLDRDGPLLKQVLAEVDCAINVAHVKHTRAIIKALPEPSLRLITLGSTRKFTRFPDQKTAQVMDAETAYA-GVKGVILHPTMIYGGGDNNISRILRIVRRAPFVPMPQAGAALMQPIHRDDVVRALIAAIGQEVSGPPLVIAGAEALSYAALVKACGKAVGREVKIISIPIRGMRLLARMSRMTPGLPSVTADEVQRLLEDKAFDIAPMQARLGVSPCTFEEGLTRMRMAGEI 284          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: A0A353LQH9_9PROT (NADH-ubiquinone oxidoreductase n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LQH9_9PROT)

HSP 1 Score: 261 bits (668), Expect = 1.170e-83
Identity = 142/282 (50.35%), Postives = 177/282 (62.77%), Query Frame = 1
Query:    1 RIAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAHGEGVA-GIMLHPAMIYGGADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRDTGAEPIIIAGPAPLSYAEIIAACAGAAGRRVRIAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLARMRRAGDL 843
            ++AVIG TGN G+ + A L   G   I +AR+     P G  +     D   D   L  AL+  DC+IN AHARYT  II ALP    RLITLGSTRKF++FPD+KAAD+ +AE AH +    G+++HP MIYGG DNNIRR+  +IR  PVLPLPL G++L+QP+HRDDV +    A  +D G  PI + G   LSY EI+  C  A GRR  I A P  ++   A LT ILP  PT+  DEV RL EDK FD+T   +RLG  P  F EG+ARMR AG+L
Sbjct:    7 KVAVIGGTGNTGKVIAAQLRDAGYMTIVIARTAVNSSPAG--IIFRTADAGGDKAQLQAALEDVDCVINAAHARYTRNIIAALPSSGTRLITLGSTRKFTRFPDQKAADVSDAEDAHRDAHGNGLIIHPTMIYGGQDNNIRRLAGLIRKLPVLPLPLGGQALMQPVHRDDVARAACTAACKDVGEGPITLPGGQALSYREIVTICGEAVGRRPCIIAVPASLLGFAAPLTGILPFLPTIGPDEVRRLTEDKDFDVTPAARRLGFTPIGFAEGIARMRAAGEL 286          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: UPI001667B0E9 (NAD(P)H-binding protein n=1 Tax=Roseomonas lacus TaxID=287609 RepID=UPI001667B0E9)

HSP 1 Score: 212 bits (540), Expect = 2.260e-64
Identity = 128/276 (46.38%), Postives = 168/276 (60.87%), Query Frame = 1
Query:    4 IAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAA-HGEGVAGIMLHPAMIYGG-ADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRDT-GAEPIIIAGPAPLSYAEIIAACAGAAGRRVR-IAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLA 819
            IA++GATG  G AL  AL   G   I +AR+   +  LG        DL +D  AL  AL  AD +++  HAR+   ++ A   P A  + +GSTR+FSQ+PD     +   EAA    G  G+MLHP MIYG   ++N+RR+  ++   PV PLP  GR+L+QPIH+DDV +CL+AA  RD   AE I+IAGP PL Y + + A AGAAG R   I      ++R+LA LT+I+PG P + GDEV RL EDKAFDI AM+  LGV+P   D GLA
Sbjct:    2 IALVGATGRSGAALARALAAAGVAFIPVARNAAAWAALGLPGALRVADL-RDPAALKRALAGADRVVSTVHARWAPALLAAAE-PGASFVLMGSTRRFSQWPDAHGDGVRAGEAAFRASGRPGVMLHPTMIYGAQGEDNVRRLAALVARLPVAPLPGGGRALVQPIHQDDVTRCLMAAAMRDWHAAETIVIAGPKPLPYRDFLRAVAGAAGLRTPPILPISALLLRLLAPLTRIVPGLPRIGGDEVRRLTEDKAFDIGAMRNVLGVDPMPLDRGLA 275          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: UPI001E6225E9 (NAD(P)H-binding protein n=1 Tax=Roseomonas sp. CECT 9278 TaxID=2845823 RepID=UPI001E6225E9)

HSP 1 Score: 211 bits (538), Expect = 4.660e-64
Identity = 124/276 (44.93%), Postives = 172/276 (62.32%), Query Frame = 1
Query:    4 IAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAH-GEGVAGIMLHPAMIYGG-ADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRD-TGAEPIIIAGPAPLSYAEIIAACAGAAGRRVR-IAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLA 819
            IA++GATG  G AL  AL + G   I +AR   +++ LG      A DL +D  ALA AL  AD +++  HAR+   ++ A   P A  + +GSTR+FS++PD     +   EAA    G AG+MLHP MIYG   ++N+RR+  ++   PV PLP  GR+L+QPIH+ DV +CL+AA+  D  GA+ I+IAGPAP++Y + + A A AAG R   I   P   +R++A L +++PG P V GDE+ RL EDK FDI  M++ LGVNP    EGLA
Sbjct:    3 IALVGATGRSGLALARALAEAGTPFIPVARDAAKWRALGLPGDPRAADL-RDATALARALAGADRVVSTVHARWAPALL-AAADPGASFVLMGSTRRFSRWPDDHGDGVRAGEAALLASGRAGVMLHPTMIYGAQGEDNVRRLAALLARLPVAPLPGGGRALVQPIHQGDVTRCLVAALRHDWDGAQAIVIAGPAPMAYRDFLRAVAAAAGLRAPPILPIPALPLRLVAPLARLIPGLPRVGGDEIRRLTEDKDFDIAPMRRLLGVNPIGLAEGLA 276          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: A0A1M3Q274_9PROT (NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillales bacterium 70-18 TaxID=1895826 RepID=A0A1M3Q274_9PROT)

HSP 1 Score: 211 bits (537), Expect = 7.200e-64
Identity = 127/275 (46.18%), Postives = 170/275 (61.82%), Query Frame = 1
Query:   10 VIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAH-GEGVAGIMLHPAMIYGG-ADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRD-TGAEPIIIAGPAPLSYAEIIAACAGAAGR-RVRIAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLAR 822
            VIGA+G  G AL  ALV  G  V+ + R P  +Q LG        +L +D  ALA AL +A  I + AHAR+T+ I+ A P  +ARL+ LGSTR+F+++ D   + +L  E A    G  G+MLHP MIYG   ++N+RR+ R++RW PV+PLP  GR L+QPIH+DDV +C+LAA+D    G + ++IAGP PL YA  + A A AAG  R RI   P W++   A LT++L   P +   EV RL+EDKAF I  M   L V P   +EGLAR
Sbjct:   13 VIGASGRSGAALCRALVARGVAVVAVVRRPAAWQALGIPGEMRVAEL-RDPAALATALGNAARIASCAHARHTAAILAAAPR-RARLVLLGSTRRFTRWIDAHGSGVLAGEVALLASGRPGVMLHPTMIYGAQGEDNVRRLARLLRWLPVVPLPGGGRHLVQPIHQDDVTRCVLAALDYPWQGPQAMVIAGPTPLPYAAFVRAVAAAAGLGRPRIVPVPGWLLMAAAPLTRLLTFLPRIRAAEVRRLMEDKAFPIATMTATLDVRPIPLEEGLAR 285          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: A0A8J4HAZ6_9PROT (NADH-ubiquinone oxidoreductase n=1 Tax=Acidicaldus sp. TaxID=1872105 RepID=A0A8J4HAZ6_9PROT)

HSP 1 Score: 210 bits (534), Expect = 1.980e-63
Identity = 125/275 (45.45%), Postives = 174/275 (63.27%), Query Frame = 1
Query:   10 VIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAH-GEGVAGIMLHPAMIYGGA-DNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRD-TGAEPIIIAGPAPLSYAEIIAACAGAAG-RRVRIAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLAR 822
            VIGATG  G A+V  L  GG QV+ + R+   F+ LG  +     DL  D  AL  AL  A  I+N AHAR+T+ ++ A P   ARL+ LGSTR+F++FPD +AA++   EAA    G  G+MLHP MIYG A + N++R+  I+R  P++PLP  GR+L+QPI++DDV   ++AA+       E ++IAGPAP++YA+   A A AAG RR R+   P +++ + A   + +PG P V  +E+ RLLEDK+FDI  M  RLG+ P    EGLAR
Sbjct:    7 VIGATGKSGLAVVRRLRAGGIQVVPVVRNGPAFRALGLDIAPRVADL-ADARALRAALMDAGAIVNTAHARHTAALLAASP-EAARLVLLGSTRRFTRFPDPRAAEVAAGEAAFLASGRPGVMLHPTMIYGAAGERNVQRLADILRRLPIVPLPGGGRNLVQPIYQDDVTAAIVAALGIAWEKPEILVIAGPAPITYADFTRAVAAAAGLRRPRLVPAPGFLLALAARFGRHVPGVPRVDKEEIRRLLEDKSFDIEPMIARLGIRPTPLAEGLAR 279          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: A0A840Y096_9PROT (Nucleoside-diphosphate-sugar epimerase n=1 Tax=Roseomonas alkaliterrae TaxID=1452450 RepID=A0A840Y096_9PROT)

HSP 1 Score: 209 bits (533), Expect = 2.560e-63
Identity = 125/276 (45.29%), Postives = 168/276 (60.87%), Query Frame = 1
Query:    4 IAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAH-GEGVAGIMLHPAMIYGG-ADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRD-TGAEPIIIAGPAPLSYAEIIAACAGAAGRRVR-IAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLA 819
            IA+IGATG  G AL   L   G   I + R  +R++ LG        DL +D  AL  AL  A  I++ AHAR+   I+ A P   A  + +GSTR+FS++PD     +   EAA    G  G+MLHP MIYG   ++N++R+  ++   PV PLP  GR+L+QPIH+ DV +CLLAA+ RD  G   I+IAGPAPL+Y + +AA A AAG RV  I   P  ++R+LA L +++PG P +  DE+ RL EDKAFDI  M+  LGV P   D+GLA
Sbjct:    2 IALIGATGRSGAALARDLATSGIAFIPVVRDAERWRALGLPGQARIADL-RDAQALRAALAGAARIVSTAHARHAPAILAAAPA-DASFVFMGSTRRFSRWPDAHGQGVRAGEAAFLASGRRGVMLHPTMIYGAQGEDNVQRLAALLARLPVAPLPGGGRALVQPIHQSDVTRCLLAALRRDWAGTGTIVIAGPAPLAYRDFLAAVARAAGLRVPPILPVPALLLRLLAPLARLIPGLPRIGADEIRRLTEDKAFDIAPMRAELGVEPIPLDQGLA 275          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: A0A7W4J8U1_9PROT (NADH-ubiquinone oxidoreductase n=4 Tax=Gluconacetobacter TaxID=89583 RepID=A0A7W4J8U1_9PROT)

HSP 1 Score: 209 bits (531), Expect = 6.120e-63
Identity = 122/276 (44.20%), Postives = 168/276 (60.87%), Query Frame = 1
Query:   10 VIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAH-GEGVAGIMLHPAMIYGG-ADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRD-TGAEPIIIAGPAPLSYAEIIAACAGAAGRRVR-IAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLARM 825
            V+GA+G  G AL  AL+  G  V  + R   R++  G   T    DL     ALAEAL  A  + + AHAR+   ++ A+P   A L+ LGSTRKF+++PD     +L  EAA    G  G +LHP MIYG   +NN++R+  ++R  PV+PLP  GRSL+QPIH+DDV + LLAA++R   G   ++IAG   ++Y +  A  A  AG R R I   P+W MR+ A+ T ++PG PTV   E+ RLLEDKAFDI  MQ+ LG+ P T +EGL+ +
Sbjct:   14 VVGASGRSGAALCRALLDRGTTVAPVVRDAARWRATGLPGTARVADLTGPAAALAEALAGATRVASTAHARHVPALLAAMPA-DAALVCLGSTRKFTRWPDAHGNGVLAGEAALLSSGRNGAILHPTMIYGAQGENNVQRLAALMRRLPVIPLPQGGRSLVQPIHQDDVTRSLLAALERRWEGPHALVIAGGTAVAYRDFAAMVARRAGLRPRAILPVPMWTMRLAALATGLVPGLPTVGAAEIRRLLEDKAFDIGPMQRELGLTPMTLEEGLSHL 288          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: A0A5B2TCQ0_9PROT (NAD(P)H-binding protein n=1 Tax=Roseomonas oryzae TaxID=1608942 RepID=A0A5B2TCQ0_9PROT)

HSP 1 Score: 207 bits (528), Expect = 1.360e-62
Identity = 126/276 (45.65%), Postives = 169/276 (61.23%), Query Frame = 1
Query:    4 IAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAH-GEGVAGIMLHPAMIYGG-ADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRD-TGAEPIIIAGPAPLSYAEIIAACAGAAGRRVR-IAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLA 819
            +AVIGA+G  G AL  AL   G   I + R P+ +   G        DL +DG AL  AL  A  +++ AHAR+   I+DA   P A L+ +GSTR+FS++PD     +   EAA  G G  G+MLHP MIYG   +NN++R+  ++R  PV PLP  G++L+QPIH+DDV   LLAA+D D    E +++AGP  L Y + +AA A AAG R   +   P   +R+LA LT+ LPG PT+  DE+ RL EDKAFDI  M+QRLGV P   ++GLA
Sbjct:    4 LAVIGASGRSGAALCRALAARGRHYIPVLRRPEAWAAQGLPGVPRLADL-QDGAALRRALAGASRVVSCAHARWAPAILDAAE-PGAMLVLMGSTRRFSRWPDAHGDGVRAGEAAFLGGGHPGVMLHPTMIYGAEGENNVQRLAALMRRLPVAPLPGGGQALVQPIHQDDVTASLLAALDLDWREPETMVVAGPEALRYRDFLAAVARAAGLRAPPVLPVPAGPLRLLAPLTRWLPGLPTIGADEIRRLTEDKAFDIAPMRQRLGVAPRPLEQGLA 277          
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Match: UPI001AE0B5E0 (NADH-ubiquinone oxidoreductase n=1 Tax=Roseomonas sp. PWR1 TaxID=2820810 RepID=UPI001AE0B5E0)

HSP 1 Score: 207 bits (528), Expect = 1.450e-62
Identity = 123/276 (44.57%), Postives = 169/276 (61.23%), Query Frame = 1
Query:    4 IAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDLDKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFSQFPDRKAADILEAEAAH-GEGVAGIMLHPAMIYGG-ADNNIRRMMRIIRWTPVLPLPLAGRSLLQPIHRDDVVQCLLAAIDRD-TGAEPIIIAGPAPLSYAEIIAACAGAAGRRVR-IAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDKAFDITAMQQRLGVNPCTFDEGLA 819
            IA++GATG  G AL   L  GG   I +AR+   ++ LG        DL +D  ALA AL  A  I++ AHAR+   ++ A   P A  + +GSTR+FS++PD     +   EAA    G  G+MLHP MIYG   ++N+RR+  ++   PV PLP  GR+L+QPIH+ DV +CLLAA+ RD  GA  I+IAGP+P+ Y + + A A AAG R   I   P   +R+LA LT+++PG P +  DE+ RL EDKAFDI  M+  LGV+P   ++GLA
Sbjct:    2 IALVGATGRSGAALARVLAAGGIPFIPVARNAAAWRALGLPGELRVADL-RDAAALAHALAGATRIVSTAHARWAPALLAAAE-PGADFVLMGSTRRFSRWPDAHGDGVRAGEAAFLASGRRGVMLHPTMIYGAEGEDNVRRLAALVARLPVAPLPGGGRALVQPIHQSDVARCLLAALRRDWDGARTIVIAGPSPMPYRDFLRAVAAAAGLRAPPILPIPALPLRLLAPLTRLIPGLPRIGADEIRRLTEDKAFDIGPMRDLLGVDPIPLEQGLA 275          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig104.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TUB3_9PROT9.740e-11157.30NADH-ubiquinone oxidoreductase n=1 Tax=Alphaproteo... [more]
A0A353LQH9_9PROT1.170e-8350.35NADH-ubiquinone oxidoreductase n=6 Tax=Alphaproteo... [more]
UPI001667B0E92.260e-6446.38NAD(P)H-binding protein n=1 Tax=Roseomonas lacus T... [more]
UPI001E6225E94.660e-6444.93NAD(P)H-binding protein n=1 Tax=Roseomonas sp. CEC... [more]
A0A1M3Q274_9PROT7.200e-6446.18NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospiril... [more]
A0A8J4HAZ6_9PROT1.980e-6345.45NADH-ubiquinone oxidoreductase n=1 Tax=Acidicaldus... [more]
A0A840Y096_9PROT2.560e-6345.29Nucleoside-diphosphate-sugar epimerase n=1 Tax=Ros... [more]
A0A7W4J8U1_9PROT6.120e-6344.20NADH-ubiquinone oxidoreductase n=4 Tax=Gluconaceto... [more]
A0A5B2TCQ0_9PROT1.360e-6245.65NAD(P)H-binding protein n=1 Tax=Roseomonas oryzae ... [more]
UPI001AE0B5E01.450e-6244.57NADH-ubiquinone oxidoreductase n=1 Tax=Roseomonas ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig104contigP-wetherbeei_contig104:10777..11622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1054213.HMPREF9946_03848
PFAMsNAD_binding_10
Model size846
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.43e-60
EggNOG OGsCOG0702@1|root,COG0702@2|Bacteria,1R6XG@1224|Proteobacteria,2U42S@28211|Alphaproteobacteria
Descriptionepimerase
Cds size846
COG categoryGM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.6446824-CDS-P-wetherbeei_contig104:10776..116221683185867.6446824-CDS-P-wetherbeei_contig104:10776..11622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig104 10777..11622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig104.13.1prot_P-wetherbeei_contig104.13.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig104 10777..11622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig104.13.1

>prot_P-wetherbeei_contig104.13.1 ID=prot_P-wetherbeei_contig104.13.1|Name=mRNA_P-wetherbeei_contig104.13.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
RIAVIGATGNVGRALVAALVQGGAQVITLARSPQRFQPLGHRVTQCALDL
DKDGPALAEALQHADCIINVAHARYTSKIIDALPGPQARLITLGSTRKFS
QFPDRKAADILEAEAAHGEGVAGIMLHPAMIYGGADNNIRRMMRIIRWTP
VLPLPLAGRSLLQPIHRDDVVQCLLAAIDRDTGAEPIIIAGPAPLSYAEI
IAACAGAAGRRVRIAATPLWVMRMLAMLTKILPGFPTVAGDEVLRLLEDK
AFDITAMQQRLGVNPCTFDEGLARMRRAGDL*
back to top

mRNA from alignment at P-wetherbeei_contig104:10777..11622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig104.13.1 ID=mRNA_P-wetherbeei_contig104.13.1|Name=mRNA_P-wetherbeei_contig104.13.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig104:10777..11622+ (Phaeothamnion wetherbeei SAG_119_79)
CGCATTGCCGTGATTGGCGCCACCGGCAATGTCGGGCGGGCGCTTGTGGC GGCGCTGGTGCAGGGCGGGGCGCAGGTGATTACCCTCGCGCGGTCGCCGC AGCGTTTTCAGCCGCTTGGCCATCGCGTTACGCAATGCGCACTTGATCTG GACAAAGACGGCCCGGCCCTGGCGGAGGCGCTGCAACATGCCGATTGCAT TATCAATGTGGCGCATGCCCGCTACACCAGCAAAATAATTGACGCATTGC CGGGGCCGCAGGCGCGCCTGATTACCCTGGGCTCTACCCGCAAATTCAGC CAGTTTCCCGATCGGAAAGCCGCAGACATTCTGGAAGCAGAAGCCGCCCA TGGCGAAGGCGTTGCGGGGATAATGCTGCACCCCGCCATGATTTATGGCG GGGCGGACAATAATATCCGCCGCATGATGCGCATTATCCGGTGGACGCCG GTTTTGCCTTTGCCGTTGGCGGGCAGATCGCTGTTACAGCCCATTCATCG TGATGATGTGGTGCAGTGCTTGCTGGCGGCGATAGACAGGGATACGGGGG CTGAGCCGATAATTATTGCCGGGCCCGCGCCATTGTCTTATGCGGAAATC ATTGCAGCCTGCGCGGGGGCGGCGGGCAGGCGGGTGCGCATTGCCGCAAC GCCGCTATGGGTGATGCGGATGCTGGCGATGCTGACGAAAATTCTTCCGG GTTTTCCTACGGTGGCGGGCGATGAGGTGTTGCGCCTGCTGGAAGACAAG GCCTTTGACATAACGGCGATGCAGCAAAGGCTGGGGGTTAATCCCTGCAC GTTTGATGAGGGGCTGGCGCGTATGCGGCGCGCAGGCGATCTATAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig104:10777..11622+

>mRNA_P-wetherbeei_contig104.13.1 ID=mRNA_P-wetherbeei_contig104.13.1|Name=mRNA_P-wetherbeei_contig104.13.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig104:10777..11622+ (Phaeothamnion wetherbeei SAG_119_79)
CGCATTGCCGTGATTGGCGCCACCGGCAATGTCGGGCGGGCGCTTGTGGC
GGCGCTGGTGCAGGGCGGGGCGCAGGTGATTACCCTCGCGCGGTCGCCGC
AGCGTTTTCAGCCGCTTGGCCATCGCGTTACGCAATGCGCACTTGATCTG
GACAAAGACGGCCCGGCCCTGGCGGAGGCGCTGCAACATGCCGATTGCAT
TATCAATGTGGCGCATGCCCGCTACACCAGCAAAATAATTGACGCATTGC
CGGGGCCGCAGGCGCGCCTGATTACCCTGGGCTCTACCCGCAAATTCAGC
CAGTTTCCCGATCGGAAAGCCGCAGACATTCTGGAAGCAGAAGCCGCCCA
TGGCGAAGGCGTTGCGGGGATAATGCTGCACCCCGCCATGATTTATGGCG
GGGCGGACAATAATATCCGCCGCATGATGCGCATTATCCGGTGGACGCCG
GTTTTGCCTTTGCCGTTGGCGGGCAGATCGCTGTTACAGCCCATTCATCG
TGATGATGTGGTGCAGTGCTTGCTGGCGGCGATAGACAGGGATACGGGGG
CTGAGCCGATAATTATTGCCGGGCCCGCGCCATTGTCTTATGCGGAAATC
ATTGCAGCCTGCGCGGGGGCGGCGGGCAGGCGGGTGCGCATTGCCGCAAC
GCCGCTATGGGTGATGCGGATGCTGGCGATGCTGACGAAAATTCTTCCGG
GTTTTCCTACGGTGGCGGGCGATGAGGTGTTGCGCCTGCTGGAAGACAAG
GCCTTTGACATAACGGCGATGCAGCAAAGGCTGGGGGTTAATCCCTGCAC
GTTTGATGAGGGGCTGGCGCGTATGCGGCGCGCAGGCGATCTATAA
back to top