mRNA_P-wetherbeei_contig10397.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10397.2.1
Unique NamemRNA_P-wetherbeei_contig10397.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10397.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10397contigP-wetherbeei_contig10397:1024..1408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size387
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185867.2827256-CDS-P-wetherbeei_contig10397:1024..14081683185867.2827256-CDS-P-wetherbeei_contig10397:1024..1408Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10397 1025..1408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10397.2.1prot_P-wetherbeei_contig10397.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10397 1025..1408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10397.2.1

>prot_P-wetherbeei_contig10397.2.1 ID=prot_P-wetherbeei_contig10397.2.1|Name=mRNA_P-wetherbeei_contig10397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
YSCSVRSGLVGGSLRSANWQVKVVAFVGSVCCGCVCGKLWEENGNSGTRI
ADCFGDESLPGGGFSGYHSDTGRRGAAEAQSSVLLCNESLHVIHPNVFAF
SLVRSFRPCQVTVEARKSEPRLFRPTRG
back to top

mRNA from alignment at P-wetherbeei_contig10397:1024..1408-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10397.2.1 ID=mRNA_P-wetherbeei_contig10397.2.1|Name=mRNA_P-wetherbeei_contig10397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=385bp|location=Sequence derived from alignment at P-wetherbeei_contig10397:1024..1408- (Phaeothamnion wetherbeei SAG_119_79)
TATTCCTGTTCGGTTCGGTCCGGTTTGGTTGGCGGGTCGTTGAGATCAGC
TAACTGGCAAGTTAAAGTGGTCGCATTTGTTGGAAGTGTTTGTTGCGGTT
GTGTCTGTGGGAAGCTCTGGGAGGAGAATGGGAACAGCGGTACGAGAATT
GCAGACTGTTTTGGGGATGAAAGCCTTCCCGGTGGCGGCTTCAGCGGCTA
CCATAGTGACACTGGTCGCAGGGGGGCGGCGGAGGCGCAGTCTTCGGTTC
TCCTCTGCAATGAAAGCCTTCACGTCATCCATCCAAATGTTTTTGCGTTC
TCTCTTGTACGCTCTTTTCGCCCGTGCCAGGTGACGGTGGAAGCGCGCAA
GTCGGAGCCCCGCCTGTTCCGGCCCACGAGGGGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10397:1024..1408-

>mRNA_P-wetherbeei_contig10397.2.1 ID=mRNA_P-wetherbeei_contig10397.2.1|Name=mRNA_P-wetherbeei_contig10397.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig10397:1024..1408- (Phaeothamnion wetherbeei SAG_119_79)
TATTCCTGTTCGGTTCGGTCCGGTTTGGTTGGCGGGTCGTTGAGATCAGC
TAACTGGCAAGTTAAAGTGGTCGCATTTGTTGGAAGTGTTTGTTGCGGTT
GTGTCTGTGGGAAGCTCTGGGAGGAGAATGGGAACAGCGGTACGAGAATT
GCAGACTGTTTTGGGGATGAAAGCCTTCCCGGTGGCGGCTTCAGCGGCTA
CCATAGTGACACTGGTCGCAGGGGGGCGGCGGAGGCGCAGTCTTCGGTTC
TCCTCTGCAATGAAAGCCTTCACGTCATCCATCCAAATGTTTTTGCGTTC
TCTCTTGTACGCTCTTTTCGCCCGTGCCAGGTGACGGTGGAAGCGCGCAA
GTCGGAGCCCCGCCTGTTCCGGCCCACGAGGGGC
back to top