mRNA_P-wetherbeei_contig10372.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10372.1.1
Unique NamemRNA_P-wetherbeei_contig10372.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: D7FZR4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR4_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 1.320e-118
Identity = 176/276 (63.77%), Postives = 219/276 (79.35%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEP--VLGEDPLVFLREYQKFARLIGVKANAQIVAALQDEENFPVEQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGGCEADATALETFRDAMVSC 828
            M PKK   DKKA  G    V GEDP +FL+ YQ+F+RLIG+ AN ++VA LQ +EN P+ Q+V++DE GPLGPGGTRAL TA++G G +MRGG Y+L+KSLR+WRA CGD+G   +AE+LRLGGA EV+LEY+ELFDD +GP GA ALG +LSIGCN+SLL+LKLDYNP LGS+G AALCRGLRTN+ L+QLHLPYC +G + G  LGE+L+Y +  L VLNLQGNR+ A+G   ++PGLARN SL +LS+ADN IG  +AD  ALE FRDAM+SC
Sbjct:    1 MGPKK--SDKKATKGVDGEVQGEDPALFLQNYQRFSRLIGISANPKVVAQLQSDENQPLAQIVVDDEHGPLGPGGTRALMTAIMGTGQDMRGGPYRLIKSLRLWRAHCGDEGARSIAEVLRLGGA-EVKLEYVELFDDNIGPTGATALGQSLSIGCNKSLLSLKLDYNPSLGSEGTAALCRGLRTNSSLKQLHLPYCDLGSDAGAPLGEMLSYTKLQLAVLNLQGNRLEAEGTKALSPGLARNRSLVYLSLADNGIGSGDADVDALEDFRDAMMSC 273          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A835YWH7_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH7_9STRA)

HSP 1 Score: 352 bits (902), Expect = 2.630e-118
Identity = 175/274 (63.87%), Postives = 214/274 (78.10%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEPVLGEDPLVFLREYQKFARLIGVKANAQIVAALQDEENFPVEQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGGCEADATALETFRDAMVSC 828
            MPPKKK+  KK  NGE V GEDPL  L  YQKF RLIGV  N ++V+ LQD+E+ P+ QLV++DE GPLGPGGTRALTT++LG G +M+GG YKLLK LR+WR  C D+GT  ++E+LRLGG  +++LEYLE+ D  VG  GALALG AL+ GCN+SLL+LKLDYN  LGS+GA ALCRGLRTNA LRQLHLPYCGVG + G ALGE+L+Y +  L VLNLQGNR+G +GL  +APGLARN S+ +LS+ADN IGG   D  AL  FRDA+++C
Sbjct:    1 MPPKKKAA-KKEHNGEAVAGEDPLQLLNNYQKFCRLIGVPINPKVVSQLQDQEHLPITQLVVDDEFGPLGPGGTRALTTSILGTGQDMKGGPYKLLKGLRLWRVNCADEGTRSISEILRLGGG-DIKLEYLEMLDCRVGGTGALALGQALAAGCNRSLLSLKLDYNQTLGSEGARALCRGLRTNATLRQLHLPYCGVGGDAGAALGEMLSYSKLQLAVLNLQGNRLGGEGLRDLAPGLARNGSVTYLSLADNAIGGVARDVEALALFRDAILAC 272          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A7S3HG08_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG08_9STRA)

HSP 1 Score: 293 bits (749), Expect = 3.340e-95
Identity = 154/273 (56.41%), Postives = 189/273 (69.23%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEPVLGEDPLVFLREYQKFARLIGVKANAQIVAALQDEENFPVEQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGGCEADATALETFRDAMVS 825
            MPPKKK G  KAA GE V GEDP+V L+ YQKF + IG+  N  +   L DEE +PV QL+I+DE GPLGPGGTRAL TA++G+G  M+GG YKLL SLRMWRA C DDG A +AE+LRLGGA +V+L +LELFD+ +GPKGA ALG+ALS G N SLLTLKLDYN  LG +G   LC+GLRTNA L+QLHL +C +    G AL EVLA  R  L V N+ GNR+G  GLA +  GL  N     + +ADN I   E D   L   ++ +++
Sbjct:    5 MPPKKKEG--KAAAGEAVEGEDPVVLLQNYQKFCKSIGLPVNTIVTKNLNDEEKYPVHQLLIDDEFGPLGPGGTRALMTAVMGSGAGMKGGPYKLLNSLRMWRANCSDDGAAAIAEILRLGGA-DVKLSFLELFDNNIGPKGANALGSALSYGHNLSLLTLKLDYNATLGDEGVINLCKGLRTNATLKQLHLQFCNLSSASGPALSEVLANSRSGLEVFNIGGNRLGGQGLASLCVGLMHNTKCETICLADNMIDQMEDDIIGLTALKECLLN 274          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A7S2XX61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX61_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.390e-79
Identity = 126/196 (64.29%), Postives = 149/196 (76.02%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEPVLGEDPLVFLREYQKFARLIGVKANAQIVAALQDEE-NFPVEQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYC 591
            M PKKK   KK  + E V GEDP + L+ Y KF++LI +  N QIV    DEE   PVEQLV++D +G LGPGGTRAL TA+LG GP M+GG YK LKSLR+WR   GDDG  C+AELLRLGG  +V + YLELFD+ +GP+GALALGNALS G NQSL+TLKLDYN  LG++G AALCRGLRTN+ L+QLHLPYC
Sbjct:    1 MAPKKKGDKKKKQDVEGVQGEDPAILLQNYVKFSKLIAIPVNQQIVDTCSDEELEGPVEQLVVDDRKGVLGPGGTRALCTAILGTGPGMQGGPYKKLKSLRLWRCNVGDDGAQCMAELLRLGGG-DVVIPYLELFDNNIGPRGALALGNALSFGTNQSLMTLKLDYNISLGAEGTAALCRGLRTNSTLKQLHLPYC 195          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A482S5Z2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Z2_9ARCH)

HSP 1 Score: 243 bits (620), Expect = 3.010e-76
Identity = 129/236 (54.66%), Postives = 162/236 (68.64%), Query Frame = 1
Query:  121 VKANAQIVAALQDEENFPVEQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAP-GLARNASLAFLSVADNEIGGCEADATALETFRDAMVS 825
            +  N+ I   L DEE +P+EQL+I+DE GPLGPGGTRAL TA++G+GP M+GG YKLLKSLR+WRA CGDDG A +AE+LRLGGA +V L YLEL D+ +  +GA ALG++LS G N SLLTLKLDYN  LG DG  ALCRGLRTN  LRQLHL +C +    G AL ++LA  R  L VLN+ GNR+   G+  +   GL  N     L+++DN I   E D   L   RD +++
Sbjct:    1 MSTNSLIGRTLNDEEKYPIEQLLIDDELGPLGPGGTRALMTAIMGSGPGMKGGPYKLLKSLRLWRANCGDDGAAAIAEVLRLGGA-DVALTYLELLDNNISIRGATALGSSLSFGHNISLLTLKLDYNQTLGDDGLVALCRGLRTNMSLRQLHLQFCNLTSASGHALADLLANSRSALEVLNVAGNRLTGQGVYVLCTKGLVVNTKCETLNLSDNLIDQLEEDLAGLTALRDCLMT 235          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A8J2X6V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X6V8_9STRA)

HSP 1 Score: 233 bits (595), Expect = 6.660e-72
Identity = 136/276 (49.28%), Postives = 175/276 (63.41%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEPVLGEDPLVFLREYQKFARLIGVKANAQIVAALQ-DEENFPV----EQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGGCEADATALETFRDAM 819
            MPPKKK G   +A        +P   +  Y+K+ +L  +  + +++A L  DEE   +    EQLVI+ E   LGP GTRAL TAL+GN P M G  +K+ K+ R WR  CGDDG ACLAE+LRLGGA E+ + YLE+ D  VG +GA ALG +L  G N+SLLTLKLDYN  LGSDG  ALC+GLRTNA L+QLHL YCG+  + G  LGEVL+Y +  L  L+LQGN++   GL+ +  G+  N  L +LS+ADN I   + D  ALE     M
Sbjct:    1 MPPKKKGG---SAIDPDDPSMNPEAVVDNYKKYCKLAALTPHPKVLAQLGGDEEQLEIMMKNEQLVIDGEP-VLGPHGTRALCTALMGNAPGMSGAVFKMAKNFRFWRMDCGDDGAACLAEILRLGGA-ELPMAYLEMLDCGVGYRGAHALGQSLMCGQNRSLLTLKLDYNSSLGSDGCKALCQGLRTNASLKQLHLCYCGLDEDAGAPLGEVLSYAKTTLQKLHLQGNKMRGGGLSGILSGMDNNNKLEYLSLADNAIAATDEDLEALEQLAGVM 271          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A7S1XUG2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUG2_9STRA)

HSP 1 Score: 218 bits (556), Expect = 1.820e-63
Identity = 132/262 (50.38%), Postives = 165/262 (62.98%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEPVLGE--DPLVFLREYQKFARLIGVKANAQIVAALQDEENFPVEQLVINDEQGPLGPGGTRALTTALL---GNGPEMRG-GSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGG 774
            M PKKK G K A  G+    E  +PL     + K  + IG + N  +VA LQ EE F   Q++I+ E  P+GP G RAL TA+L   G    + G G Y  L SLR+W    GDDG + +AE+LRLGGA EV++ YLEL D  V P GA  LG ALS G N SLLTLKL+ N  LGS G AALCRGLR+N++L+QLHL +C +GP+GGG L E L+Y R  L VL ++GNR+G  GL  +A G+  N SL  L V+DN I G
Sbjct:  250 MGPKKKGGKKAAPAGDGKEDESANPLTLCTNFTKICKTIGQQPNPGLVAQLQSEE-FSKTQIIIDGEP-PIGPAGMRALATAVLAPPGTPGLVAGCGPYTPLSSLRVWGGGLGDDGVSAVAEILRLGGA-EVKISYLELLDSGVSPYGARMLGRALSYGSNMSLLTLKLNCNLNLGSAGVAALCRGLRSNSVLKQLHLEFCNIGPDGGGPLAEALSYSRTALQVLCMKGNRLGNVGLRDLATGIQLNQSLTTLDVSDNAING 508          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A7R9U7G5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7G5_9STRA)

HSP 1 Score: 177 bits (448), Expect = 4.290e-50
Identity = 110/254 (43.31%), Postives = 151/254 (59.45%), Query Frame = 1
Query:   85 LREYQKFARLIGVKANAQIVAALQ--DEE---NFPVEQLVINDEQGPLGPGGTRALTTALLG--NGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGGCEADATALETFRDAMVS 825
            LR ++   RL+    N +I++ L   DE+      V ++V+  +   L PG  RAL  ALL      +M G  Y  LK+L++WR+  G  G + +AELLRLGGA +++L  LEL D  V   GA+ALG +L+ G N SL  L+LDYNP +GS+G AAL RGLRTN  L +LH  +C +GPE G  L ++L + +  L VLN+QGNR+   GL  +A GL  N++L  L+VADN IG  E D  AL      + S
Sbjct:   12 LRNFKCMCRLLNEDINQEILSQLSISDEDAKKGKGVSEIVVEAD---LTPGNARALAAALLAPPGMSKMLGDVYTALKTLKIWRSNLGASGVSAIAELLRLGGA-DLQLALLELVDAGVEIDGAVALGRSLATGMNVSLRILRLDYNPGIGSEGIAALSRGLRTNRSLEELHACFCSLGPEAGVFLADILEFSQSSLRVLNVQGNRLEGVGLNDVAHGLMENSALLELNVADNAIGNSELDVVALRVLAQVISS 261          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A7S2G5E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5E5_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.170e-49
Identity = 116/278 (41.73%), Postives = 148/278 (53.24%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEPVLGEDPLVFLREYQKFARLIGVKANAQIVAALQDEENFPVEQLVI--NDEQGP----LGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGGCEADATALETFRDAMV 822
            MPPKKK G KK+ N EP  GEDP  FL +Y+KF ++  +    QI  A  DEEN    Q VI  N+   P    LGPGGTRAL TA++G GP M    +K +KSLR+W +  GDDG   LAELLRLGGA E+++ YL                                                GLRTN+ L+QLHLPYC +    G  L E+L+Y R  LT+LNL+GN+I   GL  + PGL ++ SL  L ++DN+IG  E D  AL  F  A++
Sbjct:   35 MPPKKKDGAKKS-NAEPDPGEDPETFLAQYKKFCKMTAIPECEQITQAFSDEENPYAGQFVIHPNEPMDPTEPRLGPGGTRALATAIMGTGPGMVT-PFKSVKSLRIWWSNIGDDGCQALAELLRLGGA-EIQINYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLRTNSSLKQLHLPYCNLDSAVGQPLSEMLSYTRLGLTMLNLKGNQIRGQGLLELCPGLEKSKSLVDLDLSDNDIG--EQDIEALNAFAVALM 307          
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Match: A0A813A1V5_9DINO (Rnh1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1V5_9DINO)

HSP 1 Score: 175 bits (443), Expect = 2.440e-49
Identity = 111/273 (40.66%), Postives = 157/273 (57.51%), Query Frame = 1
Query:    7 MPPKKKSGDKKAANGEPVLGEDPLVFLREYQKFARLIGVKANAQIVAAL------QDEENFPVEQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLRMWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNALSIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPEGGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVADNEIGGCEADATALETF 807
            MPPK+KS D+       V  E+ L  L  Y++  + +G+  + +++A+L      + +E   ++Q+ ++ + G LG   TRAL  A+LG G  M+   Y  L+SLR W A  GD G A +A LL++G    V L  +E  +  VGP+G  ALG+AL +G N SL TL LD NP +   G   LC GLR+N  L +L L YC V  +G  AL EVL+   C L  L+L GNR+G++GLA +A GLA N SL  L++ADN IG    DA  ++  
Sbjct:    1 MPPKRKSQDE-------VDYEEEL--LSNYKRVCKALGIPESKELLASLFPAEQSKGKEAEHIQQVCVDSKLGALG---TRALAAAVLGKGQGMKS-HYPFLRSLRFWEAETGDAGVAAVAALLKVGPPL-VALGNVEFMNCGVGPEGCWALGDALMLGANTSLQTLSLDINPGIADAGTMQLCEGLRSNPTLTKLQLSYCEVAADGAAALAEVLSMPTCALKSLDLSGNRLGSEGLASLASGLAANTSLEELNLADNGIGATVDDAMTIDAL 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10372.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZR4_ECTSI1.320e-11863.77Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YWH7_9STRA2.630e-11863.87Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A7S3HG08_9STRA3.340e-9556.41Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2XX61_9STRA1.390e-7964.29Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A482S5Z2_9ARCH3.010e-7654.66Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2X6V8_9STRA6.660e-7249.28Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XUG2_9STRA1.820e-6350.38Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U7G5_9STRA4.290e-5043.31Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2G5E5_9STRA1.170e-4941.73Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A813A1V5_9DINO2.440e-4940.66Rnh1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10372contigP-wetherbeei_contig10372:3..2238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZR4
PFAMsLRR_6
Model size829
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.01e-119
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_004060.1
Descriptioninterleukin-8 biosynthetic process
Cds size822
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.0685163-CDS-P-wetherbeei_contig10372:2..1581683185866.0685163-CDS-P-wetherbeei_contig10372:2..158Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10372 3..158 -
1683185866.076822-CDS-P-wetherbeei_contig10372:711..9521683185866.076822-CDS-P-wetherbeei_contig10372:711..952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10372 712..952 -
1683185866.0839853-CDS-P-wetherbeei_contig10372:1587..18351683185866.0839853-CDS-P-wetherbeei_contig10372:1587..1835Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10372 1588..1835 -
1683185866.091135-CDS-P-wetherbeei_contig10372:2055..22321683185866.091135-CDS-P-wetherbeei_contig10372:2055..2232Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10372 2056..2232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185866.1052504-UTR-P-wetherbeei_contig10372:2232..22381683185866.1052504-UTR-P-wetherbeei_contig10372:2232..2238Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10372 2233..2238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10372.1.1prot_P-wetherbeei_contig10372.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10372 3..2232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10372.1.1

>prot_P-wetherbeei_contig10372.1.1 ID=prot_P-wetherbeei_contig10372.1.1|Name=mRNA_P-wetherbeei_contig10372.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MPPKKKSGDKKAANGEPVLGEDPLVFLREYQKFARLIGVKANAQIVAALQ
DEENFPVEQLVINDEQGPLGPGGTRALTTALLGNGPEMRGGSYKLLKSLR
MWRARCGDDGTACLAELLRLGGAAEVRLEYLELFDDEVGPKGALALGNAL
SIGCNQSLLTLKLDYNPRLGSDGAAALCRGLRTNAMLRQLHLPYCGVGPE
GGGALGEVLAYGRCHLTVLNLQGNRIGADGLARMAPGLARNASLAFLSVA
DNEIGGCEADATALETFRDAMVSC
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mRNA from alignment at P-wetherbeei_contig10372:3..2238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10372.1.1 ID=mRNA_P-wetherbeei_contig10372.1.1|Name=mRNA_P-wetherbeei_contig10372.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2236bp|location=Sequence derived from alignment at P-wetherbeei_contig10372:3..2238- (Phaeothamnion wetherbeei SAG_119_79)
GATGCGATGCCGCCGAAGAAGAAGAGCGGCGACAAGAAGGCCGCGAACGG CGAACCCGTCCTCGGCGAGGATCCCCTCGTCTTTCTGAGAGAATACCAAA AGTTTGCGAGATTGATCGGTGTCAAGGCGAACGCTCAAATCGTGGCCGCA CTGCAAGATGAAGAAAACTTCCCCGTGGAGCAGGTATGGGTGAGAATACG TTTGCTTGGATTCACGGCATGGTGGTAGTTGTCTCTCTTGTGCCGCGGGT CGCTTCTCTGTGCGCTGTGTGTGAACTCTAGAAGCCCGTTCGAAAAGCCT TCTCCGCCCGCAAGCTCCTCGGAATCCCGGGAGTTGGACTTGAGCCCTTC CCTTCCTCCCATCCCCGCAACATCCCTCTCTCCCCGGCCGCCTATCCCGT CAGCTCGTCATCAACGACGAGCAGGGGCCCCTCGGCCCCGGTGGCACCCG CGCCCTCACCACCGCCCTGCTTGGCAACGGGCCGGAGATGCGGGGTGGTT CGTACAAGCTTTTAAAGAGCCTACGGATGTGGCGCGCCCGCTGCGGCGAC GACGGCACCGCCTGCCTGGCCGAGCTGCTGCGGCTGGGCGGCGCGGCGGA GGTCCGGCTGGAATATCTGGAGCTCTTCGACGACGAGGTCGGCCCCAAGG GGTGAGATATATGGTTTTAGGGTTACAAGAGTTTTTGTGCAGGTATGTGG TGCGAATTTCTTGTCATCCGCCTGACTTGTCTCTTGCGCCTGCTACTATT CAATTAAGTTTGAAAGTCCTCGCTTCGTGGTTGCAAAAACGGATCACTGG GGCTGGCAGTTTATATATGTGTATATATGTGTGTAGGTATATGTACACTT TAGATAAAATATATAGTATACCGGCAGTTGAGGAGGCTCTAGTATTTGTT TTTGCCCTCCAGCGAAGGTGTTTCGAGCTTATTCAGAAAGGTGGAAGATA CCCTGTCTTTCCTCTTGCAAACTTGTCCTTTGAAGACCAAGGCGTGGTAT TTCTTTAGGGCGAAGTTTCTGCAAAAGCTTCAAGAATGTGAGGAAGAATG GGTGTTTCTCTTCTCTCTTTCAAGTGGCTGACCCATTTGTACGCTTCCAA AAAAAGCAGGCGGTAGCTGCGCCTATCAACAACAATCTTTTGTTTCACAC TCCTCCCCCATCTCCTTCCTCTCCCTCCCTCCCTTCTCTCCCTGCTCTAT CGGCCCTCTAATGCAATGTCCACCGGCGGCCTCAAAAATGACGCGTCGCG ACCACCGCAAACCGATCCGACGGGCCCGGCCTGCAGGGCACTGGCGCTTG GCAACGCGCTCAGCATCGGCTGCAACCAGTCCCTCCTCACCTTAAAACTC GACTACAACCCGCGGCTTGGCAGCGACGGCGCTGCCGCCCTCTGCCGCGG CCTCCGCACCAACGCCATGCTGCGGCAGCTACACTTGCCGTATTGCGGCG TCGGCCCCGAGGGCGGCGGGGCGCTCGGAGAGGTGCTGGCGTACGGGCGC TGCCACCTGACCGTTCTAAACTTGCAGGTAAACTTACCGAAGGCGTTGTT TGGTTGAAAGAGGTTTCTATTTCGCTGCCGTGTGTTTCGGGTTTTGTAGA TGGACGCCGTAGTGGCGGAAGCTGAGCAGGCAACAGCTTGCAGGAGGGAA CTTCCTGTTTGCAGATTTACTTCTGAGTCTGCGGTTTATGGCTGGGTTTC CCTGAGATTTGAATCGCGACGAGGATGCGCGCGCTTGAGGCGGTTCTTGG TTCTTCCATCCCTTTCAAAGGCTTCTGCCTGCAGGCTACCTGCCGCAGCC CGCCTCCACGCTCACGTCCTGAGTCGCGCACTGCGACTGCGGTTTTGCCC TGTGGTAGAAATGTTGCAGCTGGTGCGTGTAAAATCGTCCCTCGGTTCAC GATGCTCCGTTCACATTCGCCTGCCGTGTTCCTGCCTTTTCTTTCTGTTT CGCTTTCTCTGCCACCCTCCGTACCGAATTTCTCGTCAACCTTCTACCGC CAACCATCGTTTCATCGCGACGAATGTGTCCCGATTGCTGCCTGCCGAAC GTCGCAAACGACGGCGAACACCTAACACAGGGTAACCGCATCGGCGCCGA CGGCCTCGCCCGCATGGCGCCCGGCCTGGCGCGCAATGCGTCGCTGGCCT TCCTGTCGGTCGCCGACAATGAGATTGGTGGCTGCGAGGCGGACGCGACG GCACTCGAAACCTTCCGGGACGCTATGGTTTCGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10372:3..2238-

>mRNA_P-wetherbeei_contig10372.1.1 ID=mRNA_P-wetherbeei_contig10372.1.1|Name=mRNA_P-wetherbeei_contig10372.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig10372:3..2238- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGAAGAAGAAGAGCGGCGACAAGAAGGCCGCGAACGGCGAACC
CGTCCTCGGCGAGGATCCCCTCGTCTTTCTGAGAGAATACCAAAAGTTTG
CGAGATTGATCGGTGTCAAGGCGAACGCTCAAATCGTGGCCGCACTGCAA
GATGAAGAAAACTTCCCCGTGGAGCAGCTCGTCATCAACGACGAGCAGGG
GCCCCTCGGCCCCGGTGGCACCCGCGCCCTCACCACCGCCCTGCTTGGCA
ACGGGCCGGAGATGCGGGGTGGTTCGTACAAGCTTTTAAAGAGCCTACGG
ATGTGGCGCGCCCGCTGCGGCGACGACGGCACCGCCTGCCTGGCCGAGCT
GCTGCGGCTGGGCGGCGCGGCGGAGGTCCGGCTGGAATATCTGGAGCTCT
TCGACGACGAGGTCGGCCCCAAGGGGGCACTGGCGCTTGGCAACGCGCTC
AGCATCGGCTGCAACCAGTCCCTCCTCACCTTAAAACTCGACTACAACCC
GCGGCTTGGCAGCGACGGCGCTGCCGCCCTCTGCCGCGGCCTCCGCACCA
ACGCCATGCTGCGGCAGCTACACTTGCCGTATTGCGGCGTCGGCCCCGAG
GGCGGCGGGGCGCTCGGAGAGGTGCTGGCGTACGGGCGCTGCCACCTGAC
CGTTCTAAACTTGCAGGGTAACCGCATCGGCGCCGACGGCCTCGCCCGCA
TGGCGCCCGGCCTGGCGCGCAATGCGTCGCTGGCCTTCCTGTCGGTCGCC
GACAATGAGATTGGTGGCTGCGAGGCGGACGCGACGGCACTCGAAACCTT
CCGGGACGCTATGGTTTCGTGT
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