mRNA_P-wetherbeei_contig10368.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10368.2.1
Unique NamemRNA_P-wetherbeei_contig10368.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10368.2.1 vs. uniprot
Match: K3WTV5_GLOUD (BRCT domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTV5_GLOUD)

HSP 1 Score: 52.4 bits (124), Expect = 2.680e-6
Identity = 20/59 (33.90%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   13 KVIVVATPLSYRKYKYVYGVAAGHRIVHHKWVERSILQSTFLQTPPFLLPGGVAFFRRK 189
            K +V+ATP+S+RK K++Y +A G  +VH +W+   +     +    + +P G +F  RK
Sbjct:   89 KAVVIATPVSWRKLKFIYAIACGIPVVHPEWIHACVTAGKVVSFDGYFIPSGYSFTTRK 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10368.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
K3WTV5_GLOUD2.680e-633.90BRCT domain-containing protein n=1 Tax=Globisporan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10368contigP-wetherbeei_contig10368:1571..1759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T008401
PFAMsBRCT,BRCT_2
Model size189
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.4e-07
EggNOG OGs2CKM1@1|root,2S28W@2759|Eukaryota,1MF72@121069|Pythiales
Ec32 ortholog descriptionBRCT domain
Ec32 orthologEc-00_000140.1
Descriptionfunction. Source PGD
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.7701216-CDS-P-wetherbeei_contig10368:1570..17591683185865.7701216-CDS-P-wetherbeei_contig10368:1570..1759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10368 1571..1759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10368.2.1prot_P-wetherbeei_contig10368.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10368 1571..1759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10368.2.1

>prot_P-wetherbeei_contig10368.2.1 ID=prot_P-wetherbeei_contig10368.2.1|Name=mRNA_P-wetherbeei_contig10368.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
PASQKVIVVATPLSYRKYKYVYGVAAGHRIVHHKWVERSILQSTFLQTPP
FLLPGGVAFFRRK
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mRNA from alignment at P-wetherbeei_contig10368:1571..1759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10368.2.1 ID=mRNA_P-wetherbeei_contig10368.2.1|Name=mRNA_P-wetherbeei_contig10368.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig10368:1571..1759+ (Phaeothamnion wetherbeei SAG_119_79)
CCAGCCTCTCAAAAGGTCATCGTAGTGGCGACGCCGCTCTCGTACCGCAA
GTACAAGTACGTCTATGGCGTCGCCGCGGGCCACCGCATCGTGCACCACA
AGTGGGTGGAGCGCAGCATCCTCCAGAGCACTTTCCTGCAGACGCCGCCC
TTTTTGCTGCCCGGCGGGGTGGCTTTCTTCCGCCGGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10368:1571..1759+

>mRNA_P-wetherbeei_contig10368.2.1 ID=mRNA_P-wetherbeei_contig10368.2.1|Name=mRNA_P-wetherbeei_contig10368.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig10368:1571..1759+ (Phaeothamnion wetherbeei SAG_119_79)
CCAGCCTCTCAAAAGGTCATCGTAGTGGCGACGCCGCTCTCGTACCGCAA
GTACAAGTACGTCTATGGCGTCGCCGCGGGCCACCGCATCGTGCACCACA
AGTGGGTGGAGCGCAGCATCCTCCAGAGCACTTTCCTGCAGACGCCGCCC
TTTTTGCTGCCCGGCGGGGTGGCTTTCTTCCGCCGGAAG
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