mRNA_P-wetherbeei_contig10353.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10353.1.1
Unique NamemRNA_P-wetherbeei_contig10353.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10353.1.1 vs. uniprot
Match: A0A835ZB85_9STRA (Ammonium transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB85_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.210e-5
Identity = 34/88 (38.64%), Postives = 42/88 (47.73%), Query Frame = 1 
Query:    1 WGLLGAGFLASPAAYMEAYGAARAGDCCGILYGCGGSQLAAQVTWCLATTMLAMAAVVVPGVLLRAAKQLRVSQAAEVEGTDVMLHGG 264
            WG+   G LA P  Y   Y   R+G CCG  YGCGGSQL AQ+ + L           +   + +    LRVS+  E  G D   HGG
Sbjct:  372 WGMFAVGLLAEPNNYGRVYYEDRSGICCGAFYGCGGSQLGAQIVFILVNLAWTGVTSALMFTVAKYTVGLRVSKEIEELGMDTSKHGG 459
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10353.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZB85_9STRA5.210e-538.64Ammonium transporter n=1 Tax=Tribonema minus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10353contigP-wetherbeei_contig10353:97..1941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1Q4
Preferred nameamt-1
PFAMsAmmonium_transp
Model size983
Max annot lvl2759|Eukaryota
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categorysignal peptide
Exons3
Evalue3.37e-06
EggNOG OGsCOG0004@1|root,KOG0682@2759|Eukaryota
Descriptionammonium transmembrane transporter activity
Cds size981
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185865.2254071-CDS-P-wetherbeei_contig10353:96..3931683185865.2254071-CDS-P-wetherbeei_contig10353:96..393Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10353 97..393 -
1683185865.2438633-CDS-P-wetherbeei_contig10353:829..12131683185865.2438633-CDS-P-wetherbeei_contig10353:829..1213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10353 830..1213 -
1683185865.2584147-CDS-P-wetherbeei_contig10353:1641..19411683185865.2584147-CDS-P-wetherbeei_contig10353:1641..1941Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10353 1642..1941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10353.1.1prot_P-wetherbeei_contig10353.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10353 97..1941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10353.1.1

>prot_P-wetherbeei_contig10353.1.1 ID=prot_P-wetherbeei_contig10353.1.1|Name=mRNA_P-wetherbeei_contig10353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
WGLLGAGFLASPAAYMEAYGAARAGDCCGILYGCGGSQLAAQVTWCLATT
MLAMAAVVVPGVLLRAAKQLRVSQAAEVEGTDVMLHGGAEVGEHATTLLQ
LLTSDASFHTATDGIFSDRKMDEAAASSNFERSSTHQMTRTLSSKESDSV
SMNKPDGNSVNGASRSARSGEATKRLAKALRDGKAKQSGSGRAILNVAGG
MSPPVSPLASPAGSPTGRGASFKITLPQDASLLHDSSAEQSVSRGAERSV
SMRDMHTGDRSTVDDPNSEAHTGPVAVHRLSSITPPSLATSATAAAVAAF
TSGTSSAKGGARPSSRAGGDAATANAG
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mRNA from alignment at P-wetherbeei_contig10353:97..1941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10353.1.1 ID=mRNA_P-wetherbeei_contig10353.1.1|Name=mRNA_P-wetherbeei_contig10353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1845bp|location=Sequence derived from alignment at P-wetherbeei_contig10353:97..1941- (Phaeothamnion wetherbeei SAG_119_79)
TGGGGCCTTCTCGGGGCCGGGTTCCTCGCCTCCCCAGCTGCTTACATGGA
GGCCTACGGCGCCGCCCGCGCCGGCGACTGCTGTGGCATACTCTACGGCT
GCGGCGGCTCGCAGCTCGCGGCGCAGGTGACGTGGTGCCTGGCGACGACG
ATGCTGGCGATGGCCGCCGTGGTGGTGCCTGGGGTGCTTTTGCGGGCGGC
GAAGCAGCTGCGCGTGTCGCAGGCGGCCGAGGTAGAGGGCACGGATGTCA
TGCTGCACGGCGGCGCTGAGGTCGGGGAGCACGCCACCACGCTGCTGCAG
GTGAGTGGAAGCGGTGGGTGATCGCGTACCGGAAAATTGGAAGGGGAGAA
GGGCTTGCCGGCGGGCACCGAGACGCCACAGTTTTTCGAGGGACGAAAGG
AGCAAAAAAGTGAGGGAGAAGTCGGAGCTACGTCGCGGCTCGGAGGGAGG
TTGGCGGGCGGGGTGGGCGCACGCAGTGGCGGGGGGGGCTGAGCGCATTG
CTTTCCTCCGGTTCTCTCTCTTGCTTCCTTCGCCGCCTGCTGATGATATT
GATACTGACAGCAGCTGGGGAAGCGGCGCCGTCGTGTTACCGTTTGTGGC
CTTGCAACCGCAACTCGGTTTCCGTCTAGGCCTGTCCCATCCTCCATTTC
TGTTCCTCCCAGCCAGAGCCAAAGCAACCACCACCCCTGCCCTCCTTCCC
GCCAAACTCAACCCTCAAAAATTAACAGCTGCTGACGAGCGACGCGTCGT
TCCACACGGCGACCGACGGCATCTTCAGCGACCGCAAGATGGACGAGGCG
GCGGCCAGCAGCAACTTCGAGCGCAGCTCCACCCACCAGATGACACGCAC
TCTCAGCTCCAAGGAGTCCGACTCCGTCTCTATGAACAAGCCGGACGGCA
ACAGCGTCAATGGTGCCAGCCGAAGCGCGCGCAGCGGCGAGGCGACGAAG
CGCTTGGCCAAGGCACTCCGGGACGGCAAGGCAAAGCAGAGCGGCAGCGG
CCGCGCCATCCTCAACGTGGCGGGGGGAATGTCGCCGCCCGTCTCGCCGC
TGGCGTCGCCGGCCGGTTCACCGACCGGCCGGGGCGCGTCCTTCAAGATC
ACCCTGCCGCAGGTGAGCACAGTGCGGACTCTATTTGCTCTTTCTTGCAT
GGACGTAGCAGATTGGCACCGCTATTATTGGTACGGATGACGGAAGCGAT
GGCAGCGGGTGTGGGAGTGGCGGTGGCGAAGGCGGCGGCGGCAGCGACGG
TGGTGGCGAAGGCGGCGGCGGCAGCGACGGTGGTGGCTGCAGCGGCGGCA
GAGGTGGCTGGTGCGGCAGAGGTGGCATGGGTAATGTTGGGCACCATATT
TCGCTGCATCCTTCTTCCCTGATGGTATGCTGTGGCTTTGAAAGACTTGG
GGGATGCAATAAGAATCGCTACCCGCGAAGTTGTAATTTTAAAGCGGTAC
TTATCCACCCGTTCCTTCCGTATATCCCCTCCGTCACCGCCTGACTTTCC
GTCACTTTCTTCCCTGCTATTCCTTTCGTTTTGCTTCTTCTCTCCCAGGA
CGCGAGCCTGCTGCACGACAGTAGCGCGGAGCAGTCGGTGTCGCGTGGCG
CAGAAAGGTCGGTGTCGATGCGTGACATGCACACTGGGGACAGAAGCACA
GTGGACGATCCCAACTCCGAAGCCCACACCGGCCCAGTGGCCGTCCATCG
CCTCTCCAGCATTACTCCGCCGTCGCTCGCCACTAGTGCGACGGCCGCCG
CCGTTGCCGCCTTCACATCTGGCACGTCGTCTGCCAAAGGTGGCGCGAGG
CCTAGCAGCAGGGCTGGAGGCGACGCAGCCACCGCGAACGCCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10353:97..1941-

>mRNA_P-wetherbeei_contig10353.1.1 ID=mRNA_P-wetherbeei_contig10353.1.1|Name=mRNA_P-wetherbeei_contig10353.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig10353:97..1941- (Phaeothamnion wetherbeei SAG_119_79)
TGGGGCCTTCTCGGGGCCGGGTTCCTCGCCTCCCCAGCTGCTTACATGGA
GGCCTACGGCGCCGCCCGCGCCGGCGACTGCTGTGGCATACTCTACGGCT
GCGGCGGCTCGCAGCTCGCGGCGCAGGTGACGTGGTGCCTGGCGACGACG
ATGCTGGCGATGGCCGCCGTGGTGGTGCCTGGGGTGCTTTTGCGGGCGGC
GAAGCAGCTGCGCGTGTCGCAGGCGGCCGAGGTAGAGGGCACGGATGTCA
TGCTGCACGGCGGCGCTGAGGTCGGGGAGCACGCCACCACGCTGCTGCAG
CTGCTGACGAGCGACGCGTCGTTCCACACGGCGACCGACGGCATCTTCAG
CGACCGCAAGATGGACGAGGCGGCGGCCAGCAGCAACTTCGAGCGCAGCT
CCACCCACCAGATGACACGCACTCTCAGCTCCAAGGAGTCCGACTCCGTC
TCTATGAACAAGCCGGACGGCAACAGCGTCAATGGTGCCAGCCGAAGCGC
GCGCAGCGGCGAGGCGACGAAGCGCTTGGCCAAGGCACTCCGGGACGGCA
AGGCAAAGCAGAGCGGCAGCGGCCGCGCCATCCTCAACGTGGCGGGGGGA
ATGTCGCCGCCCGTCTCGCCGCTGGCGTCGCCGGCCGGTTCACCGACCGG
CCGGGGCGCGTCCTTCAAGATCACCCTGCCGCAGGACGCGAGCCTGCTGC
ACGACAGTAGCGCGGAGCAGTCGGTGTCGCGTGGCGCAGAAAGGTCGGTG
TCGATGCGTGACATGCACACTGGGGACAGAAGCACAGTGGACGATCCCAA
CTCCGAAGCCCACACCGGCCCAGTGGCCGTCCATCGCCTCTCCAGCATTA
CTCCGCCGTCGCTCGCCACTAGTGCGACGGCCGCCGCCGTTGCCGCCTTC
ACATCTGGCACGTCGTCTGCCAAAGGTGGCGCGAGGCCTAGCAGCAGGGC
TGGAGGCGACGCAGCCACCGCGAACGCCGGC
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