mRNA_P-wetherbeei_contig10347.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10347.2.1
Unique NamemRNA_P-wetherbeei_contig10347.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A4D9DG01_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DG01_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.160e-49
Identity = 78/119 (65.55%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   13 VIVTPACATRIKKLRQMKGQEGLRLRLSVEGGGCSGFSYSFNVEDAPPDPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            V+VT AC  RIK L+   G+E L+LRLSVEGGGCSGF+Y+F +ED P + + D+V+  +GA++VVDE S EFVRG+TVDF +DMMRSAFAV++NP SE+ACGCGSSFA+KNFE NPA+D
Sbjct:    7 VVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDD-DKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAIKNFEKNPAID 124          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: W7UC88_9STRA (Iron-sulfur cluster assembly 2 mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC88_9STRA)

HSP 1 Score: 163 bits (413), Expect = 1.840e-48
Identity = 78/119 (65.55%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   13 VIVTPACATRIKKLRQMKGQEGLRLRLSVEGGGCSGFSYSFNVEDAPPDPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            V+VT AC  RIK L+   G+E L+LRLSVEGGGCSGF+Y+F +ED P + + D+V+  +GA++VVDE S EFVRG+TVDF +DMMRSAFAV++NP SE+ACGCGSSFA+KNFE NPA+D
Sbjct:   76 VVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDD-DKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A7S2RUW2_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUW2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 9.990e-46
Identity = 72/119 (60.50%), Postives = 92/119 (77.31%), Query Frame = 1
Query:   13 VIVTPACATRIKKLRQMKGQEGLRLRLSVEGGGCSGFSYSFNVEDAPPDPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            ++VT +CA RI +L++    E ++LRL+VEGGGCSGF Y F+++  P D E D VF  DGA +V+DE S EFV GATVDF ++M+RS+F V+NNPNSE+ACGCGSSFALK F  NPAVD
Sbjct:   41 IVVTKSCARRILELQKESSSEYVKLRLTVEGGGCSGFQYQFHMDSEPVDEEEDSVFERDGASVVIDEASLEFVTGATVDFVEEMIRSSFVVVNNPNSESACGCGSSFALKAFSDNPAVD 159          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A835ZPC5_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC5_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.120e-45
Identity = 79/125 (63.20%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    7 DMVIVTPACATRIKKLRQMKGQEG-LRLRLSVEGGGCSGFSYSFNVEDAPPDPETDR---VFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            D VIVT +CA RI +LR+ +G +  LRLRLSVEGGGCSGF Y+F ++D   D E D    +F  DGA++V+DE S  FV+GATVDF  DMMR+AF+V+NNPNSENACGCGSSFA+K FE+NPA D
Sbjct:  109 DAVIVTKSCAERINQLRKRRGGDAPLRLRLSVEGGGCSGFQYTFTMDDGTGDEEIDTPDIIFERDGAQVVIDEVSLGFVKGATVDFQQDMMRAAFSVLNNPNSENACGCGSSFAVKAFEANPARD 233          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A6H5KCK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 2.020e-44
Identity = 83/146 (56.85%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 FADMVIVTPACATRIKKLRQMKGQEGLRLRLSVEGGGCSGFSYSFNVEDAP-----------------------PDPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            F D +IVT  CA R+ +LRQ K Q  L+LRLSVEGGGCSGF Y F++EDA                                F  DGA LVVD TS EFV+GATVDF +DMMRSAFAV+NNP SE+ACGCGSSFALKNFE NPA+D
Sbjct:   92 FGDTIIVTKRCAERLNELRQAKAQPDLKLRLSVEGGGCSGFQYKFSLEDAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEFERDGAVLVVDATSLEFVKGATVDFEEDMMRSAFAVLNNPVSESACGCGSSFALKNFEKNPALD 237          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A7S3NJQ0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJQ0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 4.440e-44
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    7 DMVIVTPACATRIKKLRQMKGQEGLRLRLSVEGGGCSGFSYSFNVEDAPPD-PETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            D +IVT A A RI  L+   G E  RLRL V+GGGCSGF Y+F  E A     E D VF+ DG ++VVDETS EFVRGATVD+ ++M+RSAF VINNPNSE+ACGCGSSFALKNF+SNPA+D
Sbjct:   26 DGLIVTAAAAKRIAVLKTNDG-EASRLRLGVDGGGCSGFQYTFTTEAATAKLAEDDSVFSRDGHDVVVDETSLEFVRGATVDYQEEMIRSAFVVINNPNSESACGCGSSFALKNFDSNPAID 146          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A7S2CX78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CX78_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.420e-38
Identity = 69/121 (57.02%), Postives = 87/121 (71.90%), Query Frame = 1
Query:   13 VIVTPACATRIKKLRQMKGQEGLR--LRLSVEGGGCSGFSYSFNVEDAPPDPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            +I+T +CA RI  L            LRLSVEGGGCSGF YSF ++ +   PE D  F  DG+ +V DE+S EFVRG+T+DF  +M+RS+FAV+NNPNSE+ACGCGSSFALK+F  NPA+D
Sbjct:   42 LIITKSCARRIANLNAHAADTSPSKYLRLSVEGGGCSGFQYSFELDGSELGPE-DLTFERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 161          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A7S2G7Q7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7Q7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.980e-37
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1
Query:   85 LRLSVEGGGCSGFSYSFNVEDAPPDPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            LRLSVEGGGCSGF YSF ++ +   PE D  F  DG+ +V DE+S EFVRG+T+DF  +M+RS+FAV+NNPNSE+ACGCGSSFALK+F  NPA+D
Sbjct:   12 LRLSVEGGGCSGFQYSFELDGSELGPE-DLTFERDGSRVVTDESSLEFVRGSTIDFTQEMIRSSFAVVNNPNSESACGCGSSFALKSFSDNPALD 105          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: B8BT66_THAPS (Fe-S_biosyn domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BT66_THAPS)

HSP 1 Score: 129 bits (324), Expect = 2.880e-35
Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = 1
Query:   19 VTPACATRIKKLRQMK-GQEGLRLRLSVEGGGCSGFSYSF---------------NVEDAPPDPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            +T +CA RIK+L   +   + + LRL V+ GGCSGF Y F               + ED   DP+ D +F  DG  +VVD+TS E +RG+T+D+  +M+RS+FAV++NP SE+ACGCGSSFA+KNFE+NPA+D
Sbjct:   39 ITASCAARIKQLASTRPNPDSIYLRLYVDAGGCSGFQYKFLLLSEDNDMNNSLEDDEEDGAIDPDEDIIFVKDGMRVVVDQTSLELLRGSTIDYVQEMIRSSFAVMSNPQSESACGCGSSFAVKNFETNPALD 171          
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Match: A0A7S1Z1W8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z1W8_TRICV)

HSP 1 Score: 127 bits (320), Expect = 6.670e-35
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    7 DMVIVTPACATRIKKLRQMKGQ-EGLRLRLSVEGGGCSGFSYSFNVEDAPP----------------------DPETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSENACGCGSSFALKNFESNPAVD 369
            D V+VT +CA RI +L   +   + + LR+ V+ GGCSGF Y F +E                          DP+ D VF  DGA +V+D +S E +RG+TVDF  +M+RS+FAVI NP SE+ACGCGSSFA+KNFE NPAVD
Sbjct:    9 DGVVVTASCAARILQLSSKRDDADSVYLRVYVDAGGCSGFQYKFELEGEAGESXXXXXXXXXXXXXXXXVVGIDPDEDVVFVKDGARVVIDRSSLELIRGSTVDFVREMIRSSFAVIGNPQSESACGCGSSFAVKNFEENPAVD 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10347.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9DG01_9STRA2.160e-4965.55Fe-S_biosyn domain-containing protein n=1 Tax=Nann... [more]
W7UC88_9STRA1.840e-4865.55Iron-sulfur cluster assembly 2 mitochondrial-like ... [more]
A0A7S2RUW2_9STRA9.990e-4660.50Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A835ZPC5_9STRA1.120e-4563.20Fe-S_biosyn domain-containing protein n=1 Tax=Trib... [more]
A0A6H5KCK6_9PHAE2.020e-4456.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3NJQ0_9STRA4.440e-4464.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2CX78_9STRA1.420e-3857.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2G7Q7_9STRA4.980e-3765.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8BT66_THAPS2.880e-3548.12Fe-S_biosyn domain-containing protein n=1 Tax=Thal... [more]
A0A7S1Z1W8_TRICV6.670e-3547.22Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10347contigP-wetherbeei_contig10347:1596..2364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps31510
PFAMsFe-S_biosyn
Model size447
Max annot lvl2836|Bacillariophyta
KEGG koko:K22072
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.35e-35
EggNOG OGsCOG0316@1|root,KOG1119@2759|Eukaryota,2XD5I@2836|Bacillariophyta
DescriptionIron-sulphur cluster biosynthesis
Cds size363
COG categoryCU
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.8041039-UTR-P-wetherbeei_contig10347:1595..16041683185864.8041039-UTR-P-wetherbeei_contig10347:1595..1604Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10347 1596..1604 +
1683185864.8445852-UTR-P-wetherbeei_contig10347:2289..23641683185864.8445852-UTR-P-wetherbeei_contig10347:2289..2364Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10347 2290..2364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.8241107-CDS-P-wetherbeei_contig10347:1604..17681683185864.8241107-CDS-P-wetherbeei_contig10347:1604..1768Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10347 1605..1768 +
1683185864.8349233-CDS-P-wetherbeei_contig10347:2090..22891683185864.8349233-CDS-P-wetherbeei_contig10347:2090..2289Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10347 2091..2289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10347.2.1prot_P-wetherbeei_contig10347.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10347 1605..2289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10347.2.1

>prot_P-wetherbeei_contig10347.2.1 ID=prot_P-wetherbeei_contig10347.2.1|Name=mRNA_P-wetherbeei_contig10347.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MVIVTPACATRIKKLRQMKGQEGLRLRLSVEGGGCSGFSYSFNVEDAPPD
PETDRVFAHDGAELVVDETSFEFVRGATVDFADDMMRSAFAVINNPNSEN
ACGCGSSFALKNFESNPAVD*
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mRNA from alignment at P-wetherbeei_contig10347:1596..2364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10347.2.1 ID=mRNA_P-wetherbeei_contig10347.2.1|Name=mRNA_P-wetherbeei_contig10347.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=769bp|location=Sequence derived from alignment at P-wetherbeei_contig10347:1596..2364+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGCGGACATGGTCATCGTCACGCCTGCTTGCGCAACTCGCATCAAGAA ACTGCGCCAGATGAAGGGGCAAGAGGGTCTGCGATTGCGGCTCAGCGTCG AGGGTGGAGGATGCTCGGGTTTCTCTTACAGCTTCAACGTGGAAGACGCG CCACCAGACCCTGAGACAGATCGGTGAGAAGGAGCATTTGGCTGCCTTGT TCTCTCGCAATTCCGGTTTTTTGAAATGCTTCGACTGCATTCATCATTAG GAGTGGAGATGCTGTAATACGGACCTGGCTTTTGTCACCGCCTGACGCAG CCAGAAATTGCTCCTTTCTTTCAAGTGTTCACCCTAAGCTTGCTGTAAAA CCAAGAGATCAATCCCTTAAAATCTCCTCGATTGTATCCCCTCTTTTCCG ACCAGACGCTCCAATGAACCGACCCCAACTCACCCACCACTTGCCGGCCG CGCCAATCGCCATTTACGGCCCATTCCGCAAAACAAATAAGGCAGGGTGT TCGCCCACGACGGCGCTGAGCTGGTGGTGGACGAGACGTCATTCGAATTC GTGCGCGGCGCAACGGTGGACTTTGCGGATGACATGATGCGGTCAGCCTT CGCCGTCATCAACAACCCAAACTCGGAGAATGCGTGCGGCTGCGGCAGCA GCTTCGCGCTGAAGAACTTCGAGTCGAATCCGGCGGTCGACTAATGGAAT GGCTTCCTGACGGACGCATGTTATTGATGGTGCTTCTTGCACCCGTGGCC GGCCCGGCGGTGCTCGCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10347:1596..2364+

>mRNA_P-wetherbeei_contig10347.2.1 ID=mRNA_P-wetherbeei_contig10347.2.1|Name=mRNA_P-wetherbeei_contig10347.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig10347:1596..2364+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCATCGTCACGCCTGCTTGCGCAACTCGCATCAAGAAACTGCGCCA
GATGAAGGGGCAAGAGGGTCTGCGATTGCGGCTCAGCGTCGAGGGTGGAG
GATGCTCGGGTTTCTCTTACAGCTTCAACGTGGAAGACGCGCCACCAGAC
CCTGAGACAGATCGGGTGTTCGCCCACGACGGCGCTGAGCTGGTGGTGGA
CGAGACGTCATTCGAATTCGTGCGCGGCGCAACGGTGGACTTTGCGGATG
ACATGATGCGGTCAGCCTTCGCCGTCATCAACAACCCAAACTCGGAGAAT
GCGTGCGGCTGCGGCAGCAGCTTCGCGCTGAAGAACTTCGAGTCGAATCC
GGCGGTCGACTAA
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