mRNA_P-wetherbeei_contig10338.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10338.2.1
Unique NamemRNA_P-wetherbeei_contig10338.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10338.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10338contigP-wetherbeei_contig10338:1149..2025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size877
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.2525122-UTR-P-wetherbeei_contig10338:1148..14321683185864.2525122-UTR-P-wetherbeei_contig10338:1148..1432Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10338 1149..1432 +
1683185864.2840078-UTR-P-wetherbeei_contig10338:1876..20251683185864.2840078-UTR-P-wetherbeei_contig10338:1876..2025Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10338 1877..2025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.2740328-CDS-P-wetherbeei_contig10338:1432..18761683185864.2740328-CDS-P-wetherbeei_contig10338:1432..1876Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10338 1433..1876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10338.2.1prot_P-wetherbeei_contig10338.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10338 1433..1876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10338.2.1

>prot_P-wetherbeei_contig10338.2.1 ID=prot_P-wetherbeei_contig10338.2.1|Name=mRNA_P-wetherbeei_contig10338.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MVVRKHSTLGPNAASPEALSLLKHPDGLGPLLEAVAAAHPSVAPLLEEMR
LLDAEFHSSARDLAEGQRRYLETLKDNFRKVNFTDWRRRPTPPPSATFLF
LRIGTGFLSTRPSDLCLFRSARSYSLVISKQCCPGEKYWSYLLRMTG*
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mRNA from alignment at P-wetherbeei_contig10338:1149..2025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10338.2.1 ID=mRNA_P-wetherbeei_contig10338.2.1|Name=mRNA_P-wetherbeei_contig10338.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=877bp|location=Sequence derived from alignment at P-wetherbeei_contig10338:1149..2025+ (Phaeothamnion wetherbeei SAG_119_79)
ATTGGTGCCTCTGTGCGCTTTTCTGTTGGAACGTGAGGTTGGTGTTTCCA
CGCTCCTACTATCCTCTCTGCATGATCACTTCCCTCAAGTATAATATATT
CTATACAAAACGAGGGAAGAGCGCCCGCCGGTAGCAAGAGAACTCTGCAT
GCGTTATGCCCCAGTTTGCAGTACCGCATCGTGCCTAAGCGACTTCTGTG
TGATGATTCCGTGTCGTTCTGCTTCAAACACGCCCAGGAAGGAGGAACCG
CTTCCCCTCCGCCCCTGCCGTTGTCGAGCAGAAAATGGTCGTGCGCAAGC
ACTCCACGCTCGGCCCCAACGCCGCGTCGCCGGAGGCGCTCTCCCTGCTG
AAGCATCCTGACGGCCTAGGGCCCCTTTTGGAGGCCGTTGCCGCTGCCCA
CCCATCCGTGGCCCCGTTGCTGGAGGAGATGCGGCTGCTCGACGCGGAGT
TCCACAGCTCGGCGCGCGACCTGGCGGAGGGACAGAGGCGTTACCTGGAG
ACACTCAAGGACAACTTTCGCAAGGTAAACTTTACGGATTGGAGGAGGCG
GCCGACCCCACCGCCGAGCGCTACTTTCCTCTTTCTCCGCATCGGCACGG
GATTTCTTTCCACTCGCCCGTCAGATCTGTGTTTATTCCGGTCTGCTCGT
TCATATTCCCTAGTGATATCGAAACAATGTTGCCCTGGGGAGAAATATTG
GAGTTATTTGCTAAGAATGACGGGCTGAGTAATGCATTAGCTACAGCGGA
CATGCTCTGGCAACCTTGTTCGGGAGTTCTCTTAGGCGACCAAGACTTTC
CAACTATTTCCCTTTAATCATGTCTTCGTAGAACCACTCCACTTCCTATA
TCTAATTCATCATTTCCTAATCCTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10338:1149..2025+

>mRNA_P-wetherbeei_contig10338.2.1 ID=mRNA_P-wetherbeei_contig10338.2.1|Name=mRNA_P-wetherbeei_contig10338.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig10338:1149..2025+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGTGCGCAAGCACTCCACGCTCGGCCCCAACGCCGCGTCGCCGGA
GGCGCTCTCCCTGCTGAAGCATCCTGACGGCCTAGGGCCCCTTTTGGAGG
CCGTTGCCGCTGCCCACCCATCCGTGGCCCCGTTGCTGGAGGAGATGCGG
CTGCTCGACGCGGAGTTCCACAGCTCGGCGCGCGACCTGGCGGAGGGACA
GAGGCGTTACCTGGAGACACTCAAGGACAACTTTCGCAAGGTAAACTTTA
CGGATTGGAGGAGGCGGCCGACCCCACCGCCGAGCGCTACTTTCCTCTTT
CTCCGCATCGGCACGGGATTTCTTTCCACTCGCCCGTCAGATCTGTGTTT
ATTCCGGTCTGCTCGTTCATATTCCCTAGTGATATCGAAACAATGTTGCC
CTGGGGAGAAATATTGGAGTTATTTGCTAAGAATGACGGGCTGA
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