mRNA_P-wetherbeei_contig10338.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10338.1.1
Unique NamemRNA_P-wetherbeei_contig10338.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10338.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10338contigP-wetherbeei_contig10338:3..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1073
Hectar predicted targeting categoryother localisation
Exons1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.2233646-CDS-P-wetherbeei_contig10338:2..5631683185864.2233646-CDS-P-wetherbeei_contig10338:2..563Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10338 3..563 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185864.2308898-UTR-P-wetherbeei_contig10338:563..10741683185864.2308898-UTR-P-wetherbeei_contig10338:563..1074Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10338 564..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10338.1.1prot_P-wetherbeei_contig10338.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10338 3..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10338.1.1

>prot_P-wetherbeei_contig10338.1.1 ID=prot_P-wetherbeei_contig10338.1.1|Name=mRNA_P-wetherbeei_contig10338.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp
MLAALRQGEPLPSLVAAFVREQGGLLRQQAAVQRAHCAWLTAERCTHAAS
ATTTSAPTLGAGASTVAAAGALGSALNSRQRMSSSLPLSASGVGTGAVAS
TGPRKKHLSRTVTLGASTSAEGTMPAPPATPEALVEAALRGVWIESARAC
EAVCAPFQPLLRLVTALLQPPRPHHQTAAAAVGAGAA
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mRNA from alignment at P-wetherbeei_contig10338:3..1074-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10338.1.1 ID=mRNA_P-wetherbeei_contig10338.1.1|Name=mRNA_P-wetherbeei_contig10338.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1072bp|location=Sequence derived from alignment at P-wetherbeei_contig10338:3..1074- (Phaeothamnion wetherbeei SAG_119_79)
TTTTTAAACGCAGCAATTTTCTACAACGATGACGCCACCAATCACGAGCT
CGCAGGCCTCGACTGCAACGCCGCCGACGCCGGGAGAGGTACCTCGCTTT
TTCTGCGCAGAGGACGCTCTTGGTATTAATACATTAGCCGATCGCCAACG
CCCACCATTAAGCGCCCTTTTCGGCTTCCCTTTTCTGGACCGTCGATGTT
CTTCACGCCATTTCTTTCATCAAATCCTCTGCCTTCCTCGTCCACTTTTA
ATCTCACGTCCCGTTGCACCGAACGCCAATGCCAACGCGAACGGCACGTC
CTCTGCCTCCCTCTCCCGGCTCACATGCGCTGCGCAAACCTTGCTTCCTA
ACGAACCTCTTTCCTAGCTGCGCCGAGGCCGGAAGCGACCCCGCGGCGCC
GTTTCCCCGTACGATTGCTTCCCGTGCCCGGTCCTGGACGCGCACGGATG
GTCCGGCGGATGCGCCGCAGATGAAGCGCTCGCGCACCGGTTCACAGCGT
CACACCTCGCCATGCTTGCCGCGCTGCGTCAAGGGGAGCCGCTGCCGTCG
CTTGTCGCAGCATTTGTCCGGGAGCAAGGCGGGCTCTTGCGGCAGCAGGC
GGCCGTCCAACGCGCTCACTGCGCCTGGCTGACGGCGGAGAGATGCACAC
ATGCCGCCTCTGCGACCACGACTAGTGCTCCCACTCTCGGTGCCGGTGCT
AGCACCGTCGCCGCCGCCGGCGCTCTCGGTTCTGCGCTCAACAGCCGGCA
AAGAATGTCATCATCGTTGCCGTTGTCGGCATCGGGAGTGGGGACGGGAG
CGGTGGCTTCGACCGGCCCGCGCAAGAAGCACCTCTCCCGAACCGTAACC
TTGGGGGCCTCTACTTCCGCCGAGGGCACCATGCCGGCGCCCCCCGCGAC
ACCCGAGGCGCTCGTGGAGGCGGCGCTGCGGGGCGTATGGATCGAGTCGG
CGCGCGCGTGCGAAGCGGTGTGCGCGCCGTTTCAACCGCTGCTGCGATTG
GTGACGGCGCTTCTCCAGCCGCCACGTCCACACCACCAAACCGCTGCCGC
CGCCGTCGGAGCAGGCGCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10338:3..1074-

>mRNA_P-wetherbeei_contig10338.1.1 ID=mRNA_P-wetherbeei_contig10338.1.1|Name=mRNA_P-wetherbeei_contig10338.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig10338:3..1074- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGCCGCGCTGCGTCAAGGGGAGCCGCTGCCGTCGCTTGTCGCAGC
ATTTGTCCGGGAGCAAGGCGGGCTCTTGCGGCAGCAGGCGGCCGTCCAAC
GCGCTCACTGCGCCTGGCTGACGGCGGAGAGATGCACACATGCCGCCTCT
GCGACCACGACTAGTGCTCCCACTCTCGGTGCCGGTGCTAGCACCGTCGC
CGCCGCCGGCGCTCTCGGTTCTGCGCTCAACAGCCGGCAAAGAATGTCAT
CATCGTTGCCGTTGTCGGCATCGGGAGTGGGGACGGGAGCGGTGGCTTCG
ACCGGCCCGCGCAAGAAGCACCTCTCCCGAACCGTAACCTTGGGGGCCTC
TACTTCCGCCGAGGGCACCATGCCGGCGCCCCCCGCGACACCCGAGGCGC
TCGTGGAGGCGGCGCTGCGGGGCGTATGGATCGAGTCGGCGCGCGCGTGC
GAAGCGGTGTGCGCGCCGTTTCAACCGCTGCTGCGATTGGTGACGGCGCT
TCTCCAGCCGCCACGTCCACACCACCAAACCGCTGCCGCCGCCGTCGGAG
CAGGCGCTGCC
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