mRNA_P-wetherbeei_contig10320.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10320.2.1
Unique NamemRNA_P-wetherbeei_contig10320.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: A0A6H5L3S3_9PHAE (Fatty acid hydroxylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.010e-31
Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    1 WYGHDIHSSHHAIPFYHVCIDPPELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            W GHD+H +HH  PFYHVC+DPP+LV GW +        LLP PL +T +  Y++ GL+YE  H+  H RV   +   + +KRHHM HHL D+  WLAF AP ID +FGT
Sbjct:  200 WLGHDVHEAHHDKPFYHVCVDPPDLVAGWTLAAACVFKLLLPLPLAITVLVVYMSMGLVYEWVHFIVHTRVVPRSQLGKDLKRHHMLHHLKDDTCWLAFTAPPIDTLFGT 309          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: A0A4D9D3N1_9STRA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3N1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.070e-28
Identity = 53/110 (48.18%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 WYGHDIHSSHHAIPFYHVCIDPPELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            W+G +IH+ HHA+PFYHV IDPP +V  W     +     +PQPL  T + +Y T GL YE AH+  H RV       +A+K HH +HHLVDER W AF  P+ID   GT
Sbjct:  108 WFGREIHAQHHALPFYHVSIDPPLIVGIWGAIACILGWVFVPQPLVWTVLGTYWTMGLFYEWAHFSVHTRVRPRTALGKAIKAHHTKHHLVDERFWFAFSWPMIDASLGT 217          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: W7TJ02_9STRA (Fatty acid hydroxylase-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ02_9STRA)

HSP 1 Score: 109 bits (272), Expect = 3.290e-26
Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 WYGHDIHSSHHAIPFYHVCIDPPELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            W+G +IH+ HHA+PFYHV IDPP LV  W     +     +P+PL  T + +Y   GL YE AH+  H RV       +A+K HH +HHL+DER W AF  P+ID   GT
Sbjct:  239 WFGREIHAQHHALPFYHVSIDPPLLVGVWGAIACILGWVFVPRPLVWTVLGTYWIMGLFYEWAHFSVHTRVRPRTALGKAIKAHHTKHHLLDERFWFAFSWPMIDASLGT 348          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: K8Z8Q3_NANGC (Fatty acid hydroxylase-like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8Q3_NANGC)

HSP 1 Score: 72.8 bits (177), Expect = 3.010e-14
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   67 PELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            P  ++GW           +P+PL  T + +Y   GL YE AH+  H RV       +A+K HH +HHL+DER W AF  P+ID   GT
Sbjct:   13 PSCILGWVF---------VPRPLVWTVLGTYWIMGLFYEWAHFSVHTRVRPRTALGKAIKAHHTKHHLLDERFWFAFSWPMIDASLGT 91          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: A0A1Z1FD67_9SPHN (Fatty acid hydroxylase n=2 Tax=Croceicoccus marinus TaxID=450378 RepID=A0A1Z1FD67_9SPHN)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-6
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   16 IHSSHHAIPFYHVC-IDPPELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            IH SHH  P   +  + PP + I  A+C +    ALL    G  A   ++   ++Y+  H+  H ++ + +G  RA+KRHHMRHH +DE    A      D +FG+
Sbjct:   93 IHGSHHLQPNDRLRNLMPPVVSIPVALC-IWGIFALLLGDAGTWAFLGFMLGYVMYDLTHFACH-QLPMRSGLARAIKRHHMRHHHIDENANYAVTFLFWDRVFGS 196          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: UPI001FBAF767 (sterol desaturase family protein n=1 Tax=Sphingopyxis panaciterrae TaxID=363841 RepID=UPI001FBAF767)

HSP 1 Score: 53.5 bits (127), Expect = 2.310e-6
Identity = 36/116 (31.03%), Postives = 53/116 (45.69%), Query Frame = 1
Query:    1 WYGHDIHSSHHAIP------FYHVCIDPPELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            W+   IH +HH  P         + +  P   + W+      C+A L QP G  A   ++   ++Y+  HY  H R  +      A+KRHHMRHH +D+    A  A   D +FGT
Sbjct:   64 WFVFLIHGNHHDNPGDGMRNMMPLSVSVPVAALVWS-----GCVACLGQP-GTWAFLGWIMGYVIYDGVHYACHQR-PMTGRIGAALKRHHMRHHYIDDTANYAISAIFWDRVFGT 172          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: A0A538TCU8_9BACT (Fatty acid hydroxylase n=2 Tax=Candidatus Eisenbacteria bacterium TaxID=2212470 RepID=A0A538TCU8_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 1.750e-5
Identity = 38/116 (32.76%), Postives = 55/116 (47.41%), Query Frame = 1
Query:    1 WYGHDIHSSHHAIPFYHV-CIDPPELVIGWAICFVVPCLALLPQPLGMTAVSS-----YLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            WY   IH  HH  P      + PP L I  A+ F V  L  +   L +  +S      +LT  L Y+  HY  H  + +  GFL+ +KR+H+RHH  +        +P+ D +FGT
Sbjct:  100 WYL--IHGVHHEQPQCKTRLVMPPILSIPLALFFYVVFLVTVGMILALPRLSGPSFAGFLTGYLAYDMLHYAEH-HLSMRWGFLKFLKRYHLRHHYKNPNHGFGVSSPVWDVVFGT 212          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: A0A653IZM2_9SPHN (Fatty acid hydroxylase n=1 Tax=Novosphingobium sp. 9U TaxID=2653158 RepID=A0A653IZM2_9SPHN)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-5
Identity = 37/110 (33.64%), Postives = 50/110 (45.45%), Query Frame = 1
Query:   19 HSSHHAIP------FYHVCIDPPELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            H +HH  P         + +  P   + WA       LALL    G      ++T  ++Y+  HY  H R  +  GF   +KRHHMRHH VDER   A  A   D +FG+
Sbjct:   91 HGNHHVSPNDRMRNLMPLLVSLPVSALAWA-----TNLALLGSS-GTWLFLGWITGYVIYDLVHYACHQR-PMRGGFGAVLKRHHMRHHHVDERGNYAVSAIFWDRVFGS 193          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: UPI001F304522 (sterol desaturase family protein n=1 Tax=unclassified Novosphingobium TaxID=2644732 RepID=UPI001F304522)

HSP 1 Score: 50.1 bits (118), Expect = 3.890e-5
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1
Query:  130 PLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            P G   +  ++T  +LY+A H+  H +  +     +A+KRHHMRHH VDE    A  A  +D +FG+
Sbjct:   95 PAGTWMLLGFMTGYVLYDAVHFACH-QFPMRGRLGKALKRHHMRHHYVDEDSNFAITAIFLDRVFGS 160          
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Match: UPI001CA725DC (sterol desaturase family protein n=1 Tax=Sphingomonas colocasiae TaxID=1848973 RepID=UPI001CA725DC)

HSP 1 Score: 50.1 bits (118), Expect = 5.930e-5
Identity = 36/116 (31.03%), Postives = 53/116 (45.69%), Query Frame = 1
Query:    1 WYGHDIHSSHHAIP------FYHVCIDPPELVIGWAICFVVPCLALLPQPLGMTAVSSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFIAPIIDDIFGT 330
            W+   IH +HH  P         + +  P   + W +C +     LL  P G      ++T  ++Y+A HY  H +  +      A+KRHHMRHH VD+    A  A   D IFG+
Sbjct:   92 WFVFLIHGNHHDNPNDPMRDMMPLAVSIPVSALIWGLCIL-----LLGAP-GTWLFLGFITGYVIYDAIHYACH-QWPMRGRLGAALKRHHMRHHHVDDHGNYAISAIFWDYIFGS 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10320.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5L3S3_9PHAE1.010e-3150.00Fatty acid hydroxylase domain-containing protein n... [more]
A0A4D9D3N1_9STRA1.070e-2848.18Fatty acid hydroxylase domain-containing protein n... [more]
W7TJ02_9STRA3.290e-2646.36Fatty acid hydroxylase-like protein n=1 Tax=Nannoc... [more]
K8Z8Q3_NANGC3.010e-1439.77Fatty acid hydroxylase-like protein n=1 Tax=Nannoc... [more]
A0A1Z1FD67_9SPHN1.120e-633.96Fatty acid hydroxylase n=2 Tax=Croceicoccus marinu... [more]
UPI001FBAF7672.310e-631.03sterol desaturase family protein n=1 Tax=Sphingopy... [more]
A0A538TCU8_9BACT1.750e-532.76Fatty acid hydroxylase n=2 Tax=Candidatus Eisenbac... [more]
A0A653IZM2_9SPHN2.310e-533.64Fatty acid hydroxylase n=1 Tax=Novosphingobium sp.... [more]
UPI001F3045223.890e-537.31sterol desaturase family protein n=1 Tax=unclassif... [more]
UPI001CA725DC5.930e-531.03sterol desaturase family protein n=1 Tax=Sphingomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10320contigP-wetherbeei_contig10320:1834..2362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr33435
PFAMsFA_hydroxylase
Model size330
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.64e-32
EggNOG OGs2DACJ@1|root,2S5FH@2759|Eukaryota,2XGCR@2836|Bacillariophyta
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_002790.1
DescriptionFatty acid hydroxylase superfamily
Cds size330
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.6698267-CDS-P-wetherbeei_contig10320:1833..21031683185863.6698267-CDS-P-wetherbeei_contig10320:1833..2103Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10320 1834..2103 -
1683185863.680571-CDS-P-wetherbeei_contig10320:2302..23621683185863.680571-CDS-P-wetherbeei_contig10320:2302..2362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10320 2303..2362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10320.2.1prot_P-wetherbeei_contig10320.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10320 1834..2362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10320.2.1

>prot_P-wetherbeei_contig10320.2.1 ID=prot_P-wetherbeei_contig10320.2.1|Name=mRNA_P-wetherbeei_contig10320.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
WYGHDIHSSHHAIPFYHVCIDPPELVIGWAICFVVPCLALLPQPLGMTAV
SSYLTCGLLYEAAHYYAHIRVDINNGFLRAVKRHHMRHHLVDERRWLAFI
APIIDDIFGT
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mRNA from alignment at P-wetherbeei_contig10320:1834..2362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10320.2.1 ID=mRNA_P-wetherbeei_contig10320.2.1|Name=mRNA_P-wetherbeei_contig10320.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=529bp|location=Sequence derived from alignment at P-wetherbeei_contig10320:1834..2362- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATGGGCACGATATACATTCATCTCATCACGCGATACCTTTTTATCA TGTTTGCATAGTAAGTGTTCCTTTGGTTGAGATTGATCGCATTGAAAATG CGTAAAGATCCATTTATGCTTGTCGGGAAACTCTTCTCAACAATATTACT TTCGTCTCAGTGAACTTCGTGGTTCCGATGGCGCCAAAAGTGCCCGCGCT AGCTTTTCCTGACCGTTCTGTCCTGTCGAGTCTCTCTGTTGCGCCTTCTT CTGCGGCAGGACCCGCCGGAGCTAGTGATTGGCTGGGCGATATGTTTCGT GGTGCCATGCCTGGCACTGTTGCCGCAACCTCTCGGGATGACTGCGGTGT CGTCATACCTAACCTGTGGACTACTGTACGAAGCTGCTCACTACTACGCG CACATTCGCGTGGACATCAACAACGGCTTTCTTCGCGCCGTGAAGCGCCA TCACATGCGCCACCATCTTGTGGACGAACGCCGGTGGCTCGCTTTCATTG CGCCCATCATCGACGACATTTTCGGCACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10320:1834..2362-

>mRNA_P-wetherbeei_contig10320.2.1 ID=mRNA_P-wetherbeei_contig10320.2.1|Name=mRNA_P-wetherbeei_contig10320.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig10320:1834..2362- (Phaeothamnion wetherbeei SAG_119_79)
TGGTATGGGCACGATATACATTCATCTCATCACGCGATACCTTTTTATCA
TGTTTGCATAGACCCGCCGGAGCTAGTGATTGGCTGGGCGATATGTTTCG
TGGTGCCATGCCTGGCACTGTTGCCGCAACCTCTCGGGATGACTGCGGTG
TCGTCATACCTAACCTGTGGACTACTGTACGAAGCTGCTCACTACTACGC
GCACATTCGCGTGGACATCAACAACGGCTTTCTTCGCGCCGTGAAGCGCC
ATCACATGCGCCACCATCTTGTGGACGAACGCCGGTGGCTCGCTTTCATT
GCGCCCATCATCGACGACATTTTCGGCACG
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