mRNA_P-wetherbeei_contig10317.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10317.2.1
Unique NamemRNA_P-wetherbeei_contig10317.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A3D3IAG9_9BACT (Polysaccharide export protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D3IAG9_9BACT)

HSP 1 Score: 304 bits (779), Expect = 3.140e-101
Identity = 153/258 (59.30%), Postives = 199/258 (77.13%), Query Frame = 1
Query:   13 FWLIAGIIFLNSCISNKQVLLLQHGDE--LEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNAAN-LTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINLTR 777
            F L+ G+IF  SC+SN + + LQ  D       RD+VVRSY   ++ YK+QP+DI+SVRFESLTP++++F S+NQ+     N    G+A LIGELVD  GEI FP +GK+KV G+TVFEIQ KLQ + +QYLE+PVVKVRLLNFR +VLGE N EG V  +NNRV++LEAI  AGGL++LAD+SNIK+IRQ + ++ + Y+NLL E+F+NSPYYY+ QND+LI+  L+QRP+RKY G NLALV+S LSLL+L INLTR
Sbjct:    4 FILLGGLIFFGSCVSNTKYVYLQQDDVNVKNLPRDSVVRSYDLMQYEYKVQPEDIISVRFESLTPEDFDFLSKNQSSLGGGNNAINGNAQLIGELVDRNGEIPFPFIGKIKVAGMTVFEIQDKLQTIVSQYLESPVVKVRLLNFRFTVLGEANKEGAVILNNNRVTLLEAIGWAGGLTDLADKSNIKLIRQQNGQSTVQYINLLQENFMNSPYYYINQNDILIVPALKQRPYRKYLGQNLALVVSTLSLLILVINLTR 261          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A6N4EDF2_9RHOO (Polysaccharide export protein n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A6N4EDF2_9RHOO)

HSP 1 Score: 297 bits (761), Expect = 1.260e-98
Identity = 149/251 (59.36%), Postives = 196/251 (78.09%), Query Frame = 1
Query:   31 IIFLNSCISNKQVLLLQHGDE--LEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNAANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINLTR 777
            + FL+SC++N++V L Q  D       +D+VVR+Y    FNYKIQ  DI+SVRFESLT  E++ FS           TT + LLIGELVD +GEI FPV+GKVKV GLTVFEIQ KLQQLA+QYLE+P+VKVRL+N+R + LGEV  EGT  F N+RV+++EAIA+ GG S+LADRSN+K+IRQ + +T++ Y+NLLDE+F+ SPYYY+YQNDV+I+  L+QRPFRKYFG NL L++SA+SL++LTINL++
Sbjct:    1 MFFLDSCVTNQKVTLFQKEDVNVKNLPKDSVVRTYEVDSFNYKIQASDIVSVRFESLTQKEFDIFSNKNVSAAGLGGTTVNTLLIGELVDNKGEIPFPVIGKVKVSGLTVFEIQDKLQQLADQYLESPLVKVRLINYRATFLGEVKAEGTFVFDNHRVNLVEAIARTGGFSDLADRSNVKLIRQREGKTEVVYLNLLDENFITSPYYYIYQNDVIIVPALKQRPFRKYFGENLTLIVSAISLVILTINLSK 251          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A3D6EYE4_9BACT (Polysaccharide export protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3D6EYE4_9BACT)

HSP 1 Score: 297 bits (761), Expect = 2.160e-98
Identity = 149/257 (57.98%), Postives = 203/257 (78.99%), Query Frame = 1
Query:   10 TFWLIAGIIFLNSCISNKQVLLLQHGD--ELEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNAAN--LTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTIN 768
            TF  +  ++   SC++NK+ +LLQ  D       +D+VVRSY    F YK+QP+DI+ V FESLTPD+Y+F ++N   Q   N  L  G+ALLIGEL+D +GEI FP +GKVK+ GL+VFE Q +LQ +A QYL+ PVVKVRL+NFR +VLGEVN EGT+  +NNRV+MLEA+  AGG+++LADR+NIK+IRQ++ +T+I Y+NLLDEDF+NSPYYY+YQNDVL++S L+QRP+RKYFG N++LV+S+L+LL+LTI+
Sbjct:    6 TFLFLMLLVVGTSCVTNKKFVLLQKDDLHNKNLSKDSVVRSYQPATFEYKLQPEDIVYVTFESLTPDDYDFLNQNPMMQGGGNMNLQAGNALLIGELLDYKGEIPFPFLGKVKLGGLSVFEAQDRLQAIAEQYLDKPVVKVRLINFRFTVLGEVNKEGTININNNRVTMLEALGLAGGMTDLADRANIKLIRQINGKTEIQYLNLLDEDFINSPYYYIYQNDVLMVSSLKQRPYRKYFGQNISLVLSSLTLLLLTIS 262          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A7L9BJM3_9BACT (Polysaccharide export protein n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A7L9BJM3_9BACT)

HSP 1 Score: 294 bits (753), Expect = 3.190e-97
Identity = 147/259 (56.76%), Postives = 202/259 (77.99%), Query Frame = 1
Query:    1 MRFTFWLIAGIIFLNSCISNKQVLLLQHGD--ELEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNAANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINL 771
            MR  +WL    +  +SC++NK+ +LLQ  D  + +  +DTVVR+Y    + Y+IQP+D LSVRFESLTP+E++ F+R+       NLT G+ALLIGELVD  GEI++PV+GKVKV GLTV+E Q KLQ+LA++YL++PVVKVRL+NFR ++LGEV  EGTVT  NNRV+ +EAI  AGGL++LAD+ NIK+IRQ++ + ++ Y++LLDEDF+N P Y+VYQND+LI+  LRQRP++ YFG NL+L IS+LSL ++TI L
Sbjct:    2 MRIFWWLFCSSLLFSSCVTNKKYVLLQKDDVNKKDLPKDTVVRTYDLKMYEYRIQPEDNLSVRFESLTPEEFDIFNRSIQGNTNFNLTQGNALLIGELVDPNGEISYPVIGKVKVAGLTVYEAQDKLQKLADEYLKSPVVKVRLINFRFTILGEVKQEGTVTLPNNRVNYIEAIGLAGGLTDLADKRNIKLIRQVNGKAEVRYIDLLDEDFVNRPEYFVYQNDILIVPSLRQRPYQTYFGKNLSLFISSLSLFLITITL 260          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A136LNW7_9BACT (Soluble ligand binding domain protein n=1 Tax=Bacteroidetes bacterium OLB12 TaxID=1619897 RepID=A0A136LNW7_9BACT)

HSP 1 Score: 290 bits (742), Expect = 1.600e-95
Identity = 148/245 (60.41%), Postives = 195/245 (79.59%), Query Frame = 1
Query:   46 SCISNKQVLLLQHGDE--LEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQA-QQNAANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINL 771
            SC++NK+ +LLQ  D    +  +DTVVRSY +  + Y+IQP+D +SVRFESLTP EY+ F+R    QQ   NL   +ALLIGELVD +GE+ FPV+GKVKV GLTV+E+Q KLQ LA+QYLE+PVVKVRL+NFR ++LGE   EGTV  SNNRV+ +EAI  AGGL++LAD+ NIK+IRQ+D +T++ Y+NLL EDF+NSP Y+V+QND+LI+  LRQRP++ YFG NL+LV+S+LSLL++TI L
Sbjct:   18 SCVTNKKYVLLQKDDVNVADLPKDTVVRSYDRQNYEYRIQPEDNISVRFESLTPQEYDIFNRGVLNQQMNQNLNANNALLIGELVDPRGEVFFPVLGKVKVAGLTVYEVQDKLQTLADQYLESPVVKVRLINFRFTILGEAKQEGTVLLSNNRVNYIEAIGLAGGLTDLADKQNIKLIRQVDGKTEVRYLNLLKEDFINSPEYFVHQNDILIVPALRQRPYQTYFGKNLSLVLSSLSLLLITITL 262          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A355BW63_9BACT (Polysaccharide export protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A355BW63_9BACT)

HSP 1 Score: 284 bits (727), Expect = 3.560e-93
Identity = 146/261 (55.94%), Postives = 198/261 (75.86%), Query Frame = 1
Query:    1 MRFTFWLIAGIIFLNSCISNKQVLLLQHGD--ELEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNAANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINLTR 777
            +R   +L AG   ++SC++N++  LLQH D  +    +D+V R+Y   +F+YKIQ  DI+SVRFESLT  EY+F S      N  NL  G ALL G+LVDE GEI FPVVGK K+ G+TVF+ Q  LQ+LA++YLE+P VKVRLLN+RI+ LGEVN EG V+ +NNRV+MLEAIA AGGL++LAD+++IK+IRQ   + ++ Y+N+LDE+F+NSPYYYV+QNDV+I+  L+QRP+RKYF  NL L+IS LSLL++ +N T+
Sbjct:   13 LRVILFLAAGAYLMSSCVTNRKYQLLQHDDVNKSNLKKDSVFRTYQVEKFDYKIQTNDIVSVRFESLTAKEYDFLSTQTLTPNM-NLQVGGALLFGDLVDENGEIPFPVVGKTKIAGMTVFQAQDFLQKLADKYLESPSVKVRLLNYRITFLGEVNREGVVSINNNRVNMLEAIALAGGLTDLADKTDIKIIRQKGDKMEVAYLNVLDENFVNSPYYYVHQNDVVIVPALKQRPYRKYFAQNLGLLISTLSLLLIVLNYTK 272          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A401U6X0_9BACT (Polysaccharide export protein n=2 Tax=Chryseotalea sanaruensis TaxID=2482724 RepID=A0A401U6X0_9BACT)

HSP 1 Score: 284 bits (727), Expect = 3.560e-93
Identity = 144/253 (56.92%), Postives = 193/253 (76.28%), Query Frame = 1
Query:   19 LIAGIIFLNSCISNKQVLLLQHGDELEPV--RDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNAANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINL 771
            L A + FL SC+ N++ + LQ  D    V  +DTVVR Y   +F YKIQP+DILSVRFESLTP +Y+FF+++      +     + LLIGELVD +G + FPVVGKVKV GLT++E Q  LQ++ANQYL+ P+VKVRL+NFRI+ LGEVN EGT+T SNNRVS++EAI  AGGL++LAD+ NIK+IR  + +T + Y++LLDEDF+ SP +++ QND++I+  LRQRP+RKY G N++L ISAL+L+VLTINL
Sbjct:   17 LFASLAFLGSCVPNRKYVYLQKNDVNSKVLPKDTVVREYSYEDFAYKIQPEDILSVRFESLTPQQYDFFTKDIQLAGQSLSQQANPLLIGELVDNEGMVPFPVVGKVKVAGLTIYEAQDTLQKIANQYLQNPIVKVRLINFRITFLGEVNREGTITLSNNRVSLMEAIGLAGGLTDLADKKNIKLIRIRNGQTDVQYIDLLDEDFMQSPNFFINQNDLIIVPALRQRPYRKYVGQNVSLAISALTLVVLTINL 269          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A7D5MIQ9_9BACT (Polysaccharide export protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7D5MIQ9_9BACT)

HSP 1 Score: 283 bits (725), Expect = 5.870e-93
Identity = 143/250 (57.20%), Postives = 193/250 (77.20%), Query Frame = 1
Query:   31 IIFLNSCISNKQVLLLQHGDE--LEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRN-QAQQNAANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINL 771
            I+ L SC++NK+ + LQ  D       +DTVVRSY    + Y+IQP+D +SV+FESLTP EY+ F+RN   QQ   NL   +A+LIG+LVD  GE+ +PV+GKVKV GLTV+E Q KLQ LA+QYL++PVVKVRL+NFR ++LGEV  EGTV   NNRV  +EAI  AGGL++LAD+ NIK+IRQ+D + ++ Y+NLL+EDF+N+P Y+V+QND+LI+  LRQRP++ YFG NL+LV+S+LSLL++TI L
Sbjct:   12 IVLLGSCVTNKKYVYLQKDDVNVANLPKDTVVRSYDIQNYEYRIQPEDNISVKFESLTPQEYDIFNRNIVGQQQTQNLNPMNAILIGDLVDPNGEVAYPVIGKVKVAGLTVYEAQTKLQTLASQYLKSPVVKVRLINFRFTILGEVKQEGTVVLPNNRVGYIEAIGLAGGLTDLADKRNIKLIRQVDGKAEVRYLNLLEEDFINAPEYFVHQNDILIVPALRQRPYQTYFGKNLSLVLSSLSLLLITITL 261          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: UPI0019F2EB5B (Sugar transporter n=1 Tax=Cytophagales bacterium WSM2-2 TaxID=2774202 RepID=UPI0019F2EB5B)

HSP 1 Score: 281 bits (720), Expect = 3.050e-92
Identity = 144/254 (56.69%), Postives = 193/254 (75.98%), Query Frame = 1
Query:   25 AGIIFLNSCISNKQVLLLQHGD--ELEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNA-ANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINLTR 777
            A +   +SC+ N++ L LQ  D  + +   DT+ R+Y    F Y+IQ  DI+SVR++SLT  E++F ++ Q+QQNA AN+ T   LL+GELVD +GEI  PVVGKVKV GLTVF++Q  LQ+LAN YLE PVVKVRLLN+R ++LGEV  EG +TF NNRVS+ EAI  AGGL ELADRSNIK+IRQ  ++ ++ YVNLLDE+F  SP+YYV+QND++I+ PLRQRP+R YFG NL+L++S++S+L+L I L +
Sbjct:   10 AALTVFSSCVPNRKFLYLQKNDLAKKKSPTDTITRTYDLEPFEYRIQANDIISVRYQSLTQKEFDFLAQ-QSQQNAGANVATSGVLLLGELVDHRGEIPMPVVGKVKVSGLTVFQVQDTLQKLANLYLEGPVVKVRLLNYRFTILGEVVKEGAITFGNNRVSLPEAIGLAGGLHELADRSNIKIIRQNGNKVEVHYVNLLDENFFKSPFYYVHQNDIVIVPPLRQRPYRMYFGQNLSLILSSVSVLLLIITLNK 262          
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Match: A0A7Y5D292_9BACT (Polysaccharide export protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y5D292_9BACT)

HSP 1 Score: 271 bits (692), Expect = 8.540e-88
Identity = 138/256 (53.91%), Postives = 188/256 (73.44%), Query Frame = 1
Query:   25 AGIIFL---NSCISNKQVLLLQHGDE--LEPVRDTVVRSYPQFEFNYKIQPQDILSVRFESLTPDEYNFFSRNQAQQNAANLTTGSALLIGELVDEQGEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVLGEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIFYVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSLLVLTINLTR 777
            A ++ L   +SC++N++  ++Q  D        D+V+R Y    F YKIQ  DILSVRFESLTP E++FFS     Q       G ALL+G++VD++G I FPVVGKVKV GLTVFE Q  LQ +AN+YLE+P+VKVRLLN+R + LGEVN EG +  +NNR+SMLEAI  AGGL+++AD+S++K+IRQ   +T++ Y+NLLDE+F+NSPYYYVYQNDVL++  L+QR +RKY   N++LV+SA+SLL+L   L +
Sbjct:   22 AAVVILLAASSCVTNRKYQMMQKNDVNVSNLPSDSVMREYSVKGFEYKIQTNDILSVRFESLTPKEFDFFSSGNNAQLPGGGFVGGALLLGDIVDDEGLIPFPVVGKVKVSGLTVFEAQDSLQVIANRYLESPIVKVRLLNYRATFLGEVNREGVIPINNNRISMLEAIGLAGGLTDIADKSDVKLIRQKGDKTEVVYLNLLDENFINSPYYYVYQNDVLVVPALKQRAYRKYSAQNISLVLSAVSLLLLVFTLNK 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10317.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D3IAG9_9BACT3.140e-10159.30Polysaccharide export protein n=1 Tax=Cytophagales... [more]
A0A6N4EDF2_9RHOO1.260e-9859.36Polysaccharide export protein n=1 Tax=Azospira ory... [more]
A0A3D6EYE4_9BACT2.160e-9857.98Polysaccharide export protein n=1 Tax=Cytophagales... [more]
A0A7L9BJM3_9BACT3.190e-9756.76Polysaccharide export protein n=1 Tax=Flammeovirga... [more]
A0A136LNW7_9BACT1.600e-9560.41Soluble ligand binding domain protein n=1 Tax=Bact... [more]
A0A355BW63_9BACT3.560e-9355.94Polysaccharide export protein n=1 Tax=Cytophagales... [more]
A0A401U6X0_9BACT3.560e-9356.92Polysaccharide export protein n=2 Tax=Chryseotalea... [more]
A0A7D5MIQ9_9BACT5.870e-9357.20Polysaccharide export protein n=1 Tax=Cyclobacteri... [more]
UPI0019F2EB5B3.050e-9256.69Sugar transporter n=1 Tax=Cytophagales bacterium W... [more]
A0A7Y5D292_9BACT8.540e-8853.91Polysaccharide export protein n=1 Tax=Cyclobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10317contigP-wetherbeei_contig10317:1276..2055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog643867.Ftrac_0604
PFAMsPoly_export
Model size780
Max annot lvl976|Bacteroidetes
KEGG koko:K01991
KEGG TC1.B.18
KEGG Pathwayko02026,map02026
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.13e-82
EggNOG OGsCOG1596@1|root,COG1596@2|Bacteria,4NFXJ@976|Bacteroidetes,47R1R@768503|Cytophagia
DescriptionPFAM Polysaccharide biosynthesis export protein
Cds size780
COG categoryM
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.2739153-CDS-P-wetherbeei_contig10317:1275..20551683185863.2739153-CDS-P-wetherbeei_contig10317:1275..2055Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10317 1276..2055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10317.2.1prot_P-wetherbeei_contig10317.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10317 1276..2055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10317.2.1

>prot_P-wetherbeei_contig10317.2.1 ID=prot_P-wetherbeei_contig10317.2.1|Name=mRNA_P-wetherbeei_contig10317.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=260bp
MRFTFWLIAGIIFLNSCISNKQVLLLQHGDELEPVRDTVVRSYPQFEFNY
KIQPQDILSVRFESLTPDEYNFFSRNQAQQNAANLTTGSALLIGELVDEQ
GEITFPVVGKVKVQGLTVFEIQQKLQQLANQYLEAPVVKVRLLNFRISVL
GEVNHEGTVTFSNNRVSMLEAIAQAGGLSELADRSNIKVIRQLDHETQIF
YVNLLDEDFLNSPYYYVYQNDVLIISPLRQRPFRKYFGPNLALVISALSL
LVLTINLTR*
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mRNA from alignment at P-wetherbeei_contig10317:1276..2055-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10317.2.1 ID=mRNA_P-wetherbeei_contig10317.2.1|Name=mRNA_P-wetherbeei_contig10317.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig10317:1276..2055- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATTCACATTCTGGCTGATTGCCGGTATCATATTTTTAAATTCCTG TATTTCAAACAAACAGGTCTTGCTTTTGCAGCACGGTGACGAACTCGAGC CAGTGCGGGATACAGTGGTGCGCAGTTATCCCCAATTTGAATTTAATTAC AAGATCCAGCCCCAGGATATTCTTTCGGTACGGTTTGAGAGTCTTACCCC GGATGAATATAACTTCTTTTCAAGGAATCAGGCACAGCAAAACGCAGCAA ACTTGACCACCGGCAGTGCTTTATTGATTGGCGAGTTGGTTGATGAACAA GGTGAAATCACTTTTCCTGTAGTGGGAAAAGTAAAAGTTCAGGGGCTTAC CGTTTTTGAAATCCAGCAAAAGCTGCAACAACTGGCAAACCAGTACCTGG AGGCTCCTGTGGTAAAAGTCCGGTTGCTGAATTTTAGAATTTCAGTGTTG GGAGAAGTTAATCATGAAGGAACCGTTACCTTTTCTAATAACCGGGTAAG CATGCTGGAAGCGATTGCTCAGGCTGGCGGATTATCAGAATTAGCAGATC GAAGTAATATTAAGGTGATCCGGCAACTCGATCATGAAACGCAGATTTTT TATGTGAATTTACTGGATGAAGACTTTTTAAATTCACCCTATTACTACGT TTATCAGAATGACGTGTTGATTATATCACCGTTGCGACAACGGCCATTTA GAAAGTATTTTGGACCTAACCTGGCGTTAGTTATCTCCGCACTTTCACTT TTAGTACTGACTATCAACCTAACCCGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10317:1276..2055-

>mRNA_P-wetherbeei_contig10317.2.1 ID=mRNA_P-wetherbeei_contig10317.2.1|Name=mRNA_P-wetherbeei_contig10317.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig10317:1276..2055- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATTCACATTCTGGCTGATTGCCGGTATCATATTTTTAAATTCCTG
TATTTCAAACAAACAGGTCTTGCTTTTGCAGCACGGTGACGAACTCGAGC
CAGTGCGGGATACAGTGGTGCGCAGTTATCCCCAATTTGAATTTAATTAC
AAGATCCAGCCCCAGGATATTCTTTCGGTACGGTTTGAGAGTCTTACCCC
GGATGAATATAACTTCTTTTCAAGGAATCAGGCACAGCAAAACGCAGCAA
ACTTGACCACCGGCAGTGCTTTATTGATTGGCGAGTTGGTTGATGAACAA
GGTGAAATCACTTTTCCTGTAGTGGGAAAAGTAAAAGTTCAGGGGCTTAC
CGTTTTTGAAATCCAGCAAAAGCTGCAACAACTGGCAAACCAGTACCTGG
AGGCTCCTGTGGTAAAAGTCCGGTTGCTGAATTTTAGAATTTCAGTGTTG
GGAGAAGTTAATCATGAAGGAACCGTTACCTTTTCTAATAACCGGGTAAG
CATGCTGGAAGCGATTGCTCAGGCTGGCGGATTATCAGAATTAGCAGATC
GAAGTAATATTAAGGTGATCCGGCAACTCGATCATGAAACGCAGATTTTT
TATGTGAATTTACTGGATGAAGACTTTTTAAATTCACCCTATTACTACGT
TTATCAGAATGACGTGTTGATTATATCACCGTTGCGACAACGGCCATTTA
GAAAGTATTTTGGACCTAACCTGGCGTTAGTTATCTCCGCACTTTCACTT
TTAGTACTGACTATCAACCTAACCCGTTAA
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