mRNA_P-wetherbeei_contig10313.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10313.1.1
Unique NamemRNA_P-wetherbeei_contig10313.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10313.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10313contigP-wetherbeei_contig10313:675..1350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2B2
Model size559
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.79e-05
EggNOG OGs2E3VX@1|root,2SAVN@2759|Eukaryota
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.1529486-UTR-P-wetherbeei_contig10313:674..8311683185863.1529486-UTR-P-wetherbeei_contig10313:674..831Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10313 675..831 +
1683185863.1790223-UTR-P-wetherbeei_contig10313:1326..13501683185863.1790223-UTR-P-wetherbeei_contig10313:1326..1350Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10313 1327..1350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.1620724-CDS-P-wetherbeei_contig10313:831..9511683185863.1620724-CDS-P-wetherbeei_contig10313:831..951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10313 832..951 +
1683185863.172206-CDS-P-wetherbeei_contig10313:1068..13261683185863.172206-CDS-P-wetherbeei_contig10313:1068..1326Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10313 1069..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10313.1.1prot_P-wetherbeei_contig10313.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10313 832..1326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10313.1.1

>prot_P-wetherbeei_contig10313.1.1 ID=prot_P-wetherbeei_contig10313.1.1|Name=mRNA_P-wetherbeei_contig10313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MKRQTLSTIALVSALSVLRFWSVRAEFYDVYDVTCEAGCQGGRCRFMDCE
APTCRGGGCEFQGCRRPSCRGGGCRFVSCSHPTCDGGGCDFVEMQTTLKD
GYCRGGKCQLDGNPFPSVVKGRLSV*
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mRNA from alignment at P-wetherbeei_contig10313:675..1350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10313.1.1 ID=mRNA_P-wetherbeei_contig10313.1.1|Name=mRNA_P-wetherbeei_contig10313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=676bp|location=Sequence derived from alignment at P-wetherbeei_contig10313:675..1350+ (Phaeothamnion wetherbeei SAG_119_79)
AAAAGGGCGGAAAAGGAAGGAAAAACGAAGCGCAGTGGCTTTACTCATCA
AGAGCAGCGCAAAAGGTGACCCCTGACTGGACCAAACCCAAGTGCTTTTC
CTTTCCTCGCGGTTCTCCAAAGGTATCGATATTCTTTCAGCGAGAAACAA
CCAGGCAATGAAACGACAAACGTTATCGACTATCGCCCTGGTTTCTGCAC
TGTCGGTGCTACGCTTCTGGTCAGTCCGTGCTGAATTCTATGATGTATAC
GACGTTACATGCGAGGCCGGTTGTCAGGTAAGACCTTCGCTATCTAATAC
TAGATACTAGATATACATCGAATGCGTCATTACATATCCTCAATCAGCAT
GTTTCGCGCGCCTTCGCGCACCGTTTCTCTGCTCGTGGCTGCAGGGTGGC
CGCTGCAGGTTCATGGACTGTGAAGCGCCCACCTGCCGGGGTGGTGGCTG
CGAGTTCCAGGGCTGCCGACGGCCGTCTTGCCGAGGAGGCGGCTGCCGTT
TCGTTTCATGCAGCCATCCGACATGCGACGGCGGCGGATGTGACTTTGTC
GAGATGCAGACCACGCTGAAAGACGGGTACTGCCGCGGCGGCAAGTGCCA
ACTGGACGGAAACCCGTTTCCCTCCGTTGTCAAGGGGCGCCTCAGCGTTT
AGCAATGAAAGAAAGTATATTTAACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10313:675..1350+

>mRNA_P-wetherbeei_contig10313.1.1 ID=mRNA_P-wetherbeei_contig10313.1.1|Name=mRNA_P-wetherbeei_contig10313.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig10313:675..1350+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAACGACAAACGTTATCGACTATCGCCCTGGTTTCTGCACTGTCGGT
GCTACGCTTCTGGTCAGTCCGTGCTGAATTCTATGATGTATACGACGTTA
CATGCGAGGCCGGTTGTCAGGGTGGCCGCTGCAGGTTCATGGACTGTGAA
GCGCCCACCTGCCGGGGTGGTGGCTGCGAGTTCCAGGGCTGCCGACGGCC
GTCTTGCCGAGGAGGCGGCTGCCGTTTCGTTTCATGCAGCCATCCGACAT
GCGACGGCGGCGGATGTGACTTTGTCGAGATGCAGACCACGCTGAAAGAC
GGGTACTGCCGCGGCGGCAAGTGCCAACTGGACGGAAACCCGTTTCCCTC
CGTTGTCAAGGGGCGCCTCAGCGTTTAG
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