mRNA_P-wetherbeei_contig10311.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10311.2.1
Unique NamemRNA_P-wetherbeei_contig10311.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10311.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10311contigP-wetherbeei_contig10311:1379..2007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size629
Hectar predicted targeting categoryother localisation
Exons1
Cds size603
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.07879-UTR-P-wetherbeei_contig10311:1378..14041683185863.07879-UTR-P-wetherbeei_contig10311:1378..1404Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10311 1379..1404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185863.0884738-CDS-P-wetherbeei_contig10311:1404..20071683185863.0884738-CDS-P-wetherbeei_contig10311:1404..2007Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10311 1405..2007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10311.2.1prot_P-wetherbeei_contig10311.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10311 1405..2007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10311.2.1

>prot_P-wetherbeei_contig10311.2.1 ID=prot_P-wetherbeei_contig10311.2.1|Name=mRNA_P-wetherbeei_contig10311.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=201bp
MTRLNLYLCVEPPGEDAPAAAAEAAADGEAPAAGTTTATAVIAAALPAAE
GPPLSSHAVSQPGLAVAAAATATAAGGLLSRSASAWRRDSLASLTSSRRP
ARSRHGSDATISALAGASRAEQARYLARARRLDGMDAIICWAEQADAAGR
ATPPSQPSLPSPYRAAISRQSSTASFASASFYAAAAAGYTAAAAGLAGGG
G
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mRNA from alignment at P-wetherbeei_contig10311:1379..2007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10311.2.1 ID=mRNA_P-wetherbeei_contig10311.2.1|Name=mRNA_P-wetherbeei_contig10311.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=629bp|location=Sequence derived from alignment at P-wetherbeei_contig10311:1379..2007+ (Phaeothamnion wetherbeei SAG_119_79)
GCGGCGGCAACTTTTCCAGCGAGTTAATGACTCGACTCAACCTGTACCTT
TGCGTTGAGCCGCCGGGCGAAGACGCCCCCGCAGCGGCTGCGGAGGCTGC
CGCGGACGGTGAGGCCCCAGCCGCTGGCACTACCACGGCAACTGCCGTCA
TAGCCGCCGCCCTACCGGCGGCAGAGGGACCGCCTCTGTCGTCACATGCA
GTCTCGCAGCCAGGGCTAGCGGTCGCGGCCGCCGCTACCGCCACGGCCGC
CGGCGGCCTTTTGAGCCGGTCAGCGTCCGCGTGGCGGCGGGACTCCCTGG
CTTCATTGACGTCCTCCCGCAGGCCGGCAAGGTCCCGTCACGGCTCCGAC
GCTACCATCAGCGCCCTTGCCGGTGCCAGCCGGGCCGAGCAGGCCCGCTA
CCTGGCGCGGGCGCGACGCCTCGACGGAATGGACGCCATCATCTGCTGGG
CGGAGCAAGCGGACGCCGCCGGACGCGCTACGCCGCCGTCGCAGCCGTCG
CTGCCCTCGCCGTACCGCGCCGCCATCTCCCGGCAGAGCAGCACGGCCTC
GTTTGCCTCCGCCAGCTTTTACGCCGCCGCCGCCGCGGGCTATACCGCCG
CCGCCGCCGGCCTCGCCGGCGGAGGGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10311:1379..2007+

>mRNA_P-wetherbeei_contig10311.2.1 ID=mRNA_P-wetherbeei_contig10311.2.1|Name=mRNA_P-wetherbeei_contig10311.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=603bp|location=Sequence derived from alignment at P-wetherbeei_contig10311:1379..2007+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTCGACTCAACCTGTACCTTTGCGTTGAGCCGCCGGGCGAAGACGC
CCCCGCAGCGGCTGCGGAGGCTGCCGCGGACGGTGAGGCCCCAGCCGCTG
GCACTACCACGGCAACTGCCGTCATAGCCGCCGCCCTACCGGCGGCAGAG
GGACCGCCTCTGTCGTCACATGCAGTCTCGCAGCCAGGGCTAGCGGTCGC
GGCCGCCGCTACCGCCACGGCCGCCGGCGGCCTTTTGAGCCGGTCAGCGT
CCGCGTGGCGGCGGGACTCCCTGGCTTCATTGACGTCCTCCCGCAGGCCG
GCAAGGTCCCGTCACGGCTCCGACGCTACCATCAGCGCCCTTGCCGGTGC
CAGCCGGGCCGAGCAGGCCCGCTACCTGGCGCGGGCGCGACGCCTCGACG
GAATGGACGCCATCATCTGCTGGGCGGAGCAAGCGGACGCCGCCGGACGC
GCTACGCCGCCGTCGCAGCCGTCGCTGCCCTCGCCGTACCGCGCCGCCAT
CTCCCGGCAGAGCAGCACGGCCTCGTTTGCCTCCGCCAGCTTTTACGCCG
CCGCCGCCGCGGGCTATACCGCCGCCGCCGCCGGCCTCGCCGGCGGAGGG
GGC
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