mRNA_P-wetherbeei_contig1031.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1031.5.1
Unique NamemRNA_P-wetherbeei_contig1031.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1031.5.1 vs. uniprot
Match: A0A7S4DB10_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB10_HETAK)

HSP 1 Score: 211 bits (536), Expect = 4.740e-57
Identity = 98/279 (35.13%), Postives = 139/279 (49.82%), Query Frame = 1 
Query:    1 LRSEFAEHQRTACAYRTVKCPLGCGTEMEEVVASAHAMMQCELRSWTCACGAVMRHRDRERHETADCLERVVACALCGEGVMVADRPEHDADLCPMRPWGCDCGAKVPLQNRAFHERHECQDRVLPCLNGCGFAGRRAARARHDEEPCSLTPSVCACGDLVLQRDLEQHRAAACEMRPVPCSACGARVPLAESCAHAXXXXXXXXXXXPRGCGKALLAVDLAQHLAGPCPRRPVLCGGCGREVPVGLLDTHHKSMCQVVPCSFCQRLVLAEDLDGHANE 837
            L+  +  H+ T C YR VKC   CG EME +    H  ++CELR+W C CG  +  + + +            C+ CGE +   DR EH+ DLC MRPW C CG  VP+++++ HE +EC D  L CLNGCG  GR A R  H+E  C L   +C CGD    +DL+ H+   CE R V C  C     + +   H             +GCG+A++A                    CG+E+P   L+ H +S+C+V+PC  C R++L  +   H  E
Sbjct: 1666 LKDAYRAHRETDCPYRLVKCRFNCGKEMEAMQLKIHESVECELRTWECLCGDRLPFKHKTKXXXXXXXXXXXKCSACGEEMTEGDRKEHETDLCVMRPWICGCGITVPIKDKSHHEMYECSDPSLACLNGCGMLGREAVRKAHEENECPLRLIICDCGDAFQAKDLQIHKDNYCEERAVACPLCNEPTKIRDLEKHTASECLHRVVPCKQGCGRAVVAGQXXXXXXXXXXXXXXXXKLCGKEMPHRALEAHERSLCRVLPCPQCGRVLLRGEHARHLEE 1944
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BLAST of mRNA_P-wetherbeei_contig1031.5.1 vs. uniprot
Match: A0A1W0AAT4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAT4_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.870e-10
Identity = 48/137 (35.04%), Postives = 60/137 (43.80%), Query Frame = 1 
Query:   22 HQRTACAYRTVKCPLGCGTEMEEVVASAHAMMQCELRSWTC-ACGAVMRHRDRERHETADCLERVVACAL---CGEGVMVADRPEHDADLCPMRPWGCD-----CGAKV-PLQNRAFHERHECQDRVLPCLNGCGFA 402
            HQ   C YR V C L C   +       H   +C LRS TC AC   M  ++ ++H    C +R+V C L   CGE     D   H   LC  R   C      C A + P + R  HE   C  RV+ C NGCG +
Sbjct:  459 HQVEHCHYRLVYCRLECSKSLRWHQRPDHEANECPLRSITCTACNHGMLSQELKKHSRQACSKRLVECKLYGGCGEIHRYEDMNFHTESLCVRRKRPCHWASNGCDAIIGPPEVRHLHEETTCPYRVVACRNGCGMS 595
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1031.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4DB10_HETAK4.740e-5735.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1W0AAT4_9STRA2.870e-1035.04Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1031contigP-wetherbeei_contig1031:5420..6514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_19640T0
PFAMsGPS,REJ
Model size1095
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.93e-14
EggNOG OGs2CZH5@1|root,2SACB@2759|Eukaryota
DescriptionREJ domain
Cds size1095
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.9858518-CDS-P-wetherbeei_contig1031:5419..65141683185862.9858518-CDS-P-wetherbeei_contig1031:5419..6514Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1031 5420..6514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1031.5.1prot_P-wetherbeei_contig1031.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1031 5420..6514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1031.5.1

>prot_P-wetherbeei_contig1031.5.1 ID=prot_P-wetherbeei_contig1031.5.1|Name=mRNA_P-wetherbeei_contig1031.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=365bp
LRSEFAEHQRTACAYRTVKCPLGCGTEMEEVVASAHAMMQCELRSWTCAC
GAVMRHRDRERHETADCLERVVACALCGEGVMVADRPEHDADLCPMRPWG
CDCGAKVPLQNRAFHERHECQDRVLPCLNGCGFAGRRAARARHDEEPCSL
TPSVCACGDLVLQRDLEQHRAAACEMRPVPCSACGARVPLAESCAHATEA
CPARAAPCPRGCGKALLAVDLAQHLAGPCPRRPVLCGGCGREVPVGLLDT
HHKSMCQVVPCSFCQRLVLAEDLDGHANECSSRPAPCARCSETVPLATMQ
AHLDGPCGARTVKCNACGQEVEAREAVQHTANACPERVVRCGRGCGQRMK
LSHRGTHEARSCLLN
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mRNA from alignment at P-wetherbeei_contig1031:5420..6514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1031.5.1 ID=mRNA_P-wetherbeei_contig1031.5.1|Name=mRNA_P-wetherbeei_contig1031.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1095bp|location=Sequence derived from alignment at P-wetherbeei_contig1031:5420..6514- (Phaeothamnion wetherbeei SAG_119_79)
CTCCGCAGCGAGTTCGCTGAGCACCAGCGCACCGCCTGCGCCTACCGCAC
GGTCAAGTGCCCGCTCGGCTGCGGCACCGAGATGGAGGAGGTCGTGGCGT
CGGCGCACGCCATGATGCAGTGCGAGCTGCGCAGCTGGACGTGCGCCTGC
GGCGCCGTCATGCGGCACCGCGACCGCGAGCGCCACGAGACGGCCGACTG
CCTGGAGCGCGTCGTGGCGTGCGCGCTTTGCGGGGAGGGAGTAATGGTGG
CGGACCGACCGGAGCACGATGCTGACCTCTGCCCGATGCGACCGTGGGGC
TGCGACTGCGGCGCCAAGGTGCCGCTCCAGAACCGCGCCTTCCACGAGCG
CCACGAGTGCCAGGACCGCGTGCTGCCGTGCCTTAATGGCTGCGGCTTCG
CCGGCCGCCGCGCCGCCCGCGCCCGCCACGACGAGGAGCCGTGCTCGCTG
ACGCCCAGCGTCTGCGCCTGCGGCGACCTGGTGCTGCAGCGGGACCTGGA
GCAGCACAGGGCGGCGGCGTGCGAGATGCGGCCCGTGCCGTGCAGCGCCT
GCGGCGCGCGCGTGCCACTGGCGGAGAGCTGCGCGCACGCTACGGAGGCC
TGCCCGGCGCGGGCGGCGCCGTGCCCACGCGGCTGCGGCAAGGCGTTGCT
GGCTGTGGACCTGGCGCAGCACCTGGCCGGGCCGTGCCCGCGGCGGCCGG
TGCTCTGCGGCGGCTGTGGCCGCGAGGTGCCCGTCGGGCTGCTGGACACG
CACCACAAGTCCATGTGCCAGGTGGTGCCGTGCTCCTTCTGCCAGCGGCT
GGTGCTGGCGGAGGACCTGGATGGCCACGCAAACGAGTGCAGCAGCCGGC
CGGCGCCCTGCGCCCGCTGCAGCGAGACCGTGCCCTTGGCCACGATGCAG
GCGCACCTGGACGGGCCCTGCGGTGCGCGGACGGTCAAATGCAACGCCTG
CGGGCAGGAGGTTGAGGCCCGCGAGGCGGTACAGCACACTGCCAACGCCT
GCCCGGAGCGAGTCGTGCGCTGCGGGCGCGGCTGCGGCCAGCGGATGAAG
CTATCGCACCGTGGGACGCATGAGGCGCGCAGCTGCCTTCTGAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1031:5420..6514-

>mRNA_P-wetherbeei_contig1031.5.1 ID=mRNA_P-wetherbeei_contig1031.5.1|Name=mRNA_P-wetherbeei_contig1031.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1095bp|location=Sequence derived from alignment at P-wetherbeei_contig1031:5420..6514- (Phaeothamnion wetherbeei SAG_119_79)
CTCCGCAGCGAGTTCGCTGAGCACCAGCGCACCGCCTGCGCCTACCGCAC
GGTCAAGTGCCCGCTCGGCTGCGGCACCGAGATGGAGGAGGTCGTGGCGT
CGGCGCACGCCATGATGCAGTGCGAGCTGCGCAGCTGGACGTGCGCCTGC
GGCGCCGTCATGCGGCACCGCGACCGCGAGCGCCACGAGACGGCCGACTG
CCTGGAGCGCGTCGTGGCGTGCGCGCTTTGCGGGGAGGGAGTAATGGTGG
CGGACCGACCGGAGCACGATGCTGACCTCTGCCCGATGCGACCGTGGGGC
TGCGACTGCGGCGCCAAGGTGCCGCTCCAGAACCGCGCCTTCCACGAGCG
CCACGAGTGCCAGGACCGCGTGCTGCCGTGCCTTAATGGCTGCGGCTTCG
CCGGCCGCCGCGCCGCCCGCGCCCGCCACGACGAGGAGCCGTGCTCGCTG
ACGCCCAGCGTCTGCGCCTGCGGCGACCTGGTGCTGCAGCGGGACCTGGA
GCAGCACAGGGCGGCGGCGTGCGAGATGCGGCCCGTGCCGTGCAGCGCCT
GCGGCGCGCGCGTGCCACTGGCGGAGAGCTGCGCGCACGCTACGGAGGCC
TGCCCGGCGCGGGCGGCGCCGTGCCCACGCGGCTGCGGCAAGGCGTTGCT
GGCTGTGGACCTGGCGCAGCACCTGGCCGGGCCGTGCCCGCGGCGGCCGG
TGCTCTGCGGCGGCTGTGGCCGCGAGGTGCCCGTCGGGCTGCTGGACACG
CACCACAAGTCCATGTGCCAGGTGGTGCCGTGCTCCTTCTGCCAGCGGCT
GGTGCTGGCGGAGGACCTGGATGGCCACGCAAACGAGTGCAGCAGCCGGC
CGGCGCCCTGCGCCCGCTGCAGCGAGACCGTGCCCTTGGCCACGATGCAG
GCGCACCTGGACGGGCCCTGCGGTGCGCGGACGGTCAAATGCAACGCCTG
CGGGCAGGAGGTTGAGGCCCGCGAGGCGGTACAGCACACTGCCAACGCCT
GCCCGGAGCGAGTCGTGCGCTGCGGGCGCGGCTGCGGCCAGCGGATGAAG
CTATCGCACCGTGGGACGCATGAGGCGCGCAGCTGCCTTCTGAAC
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