mRNA_P-wetherbeei_contig10295.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10295.1.1
Unique NamemRNA_P-wetherbeei_contig10295.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig10295.1.1 vs. uniprot
Match: D7G0U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 9.220e-8
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:  993 EEVCLPEDIYGSVRVSEFWQGLSEYSSLANTYVYDDIWASGG 1118
            E+V LP+DIYG+ RVSE+W G+   SSLA+TYVYDDIWA  G
Sbjct:   33 EQVSLPDDIYGAARVSEYWHGVPALSSLASTYVYDDIWAGDG 74
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BLAST of mRNA_P-wetherbeei_contig10295.1.1 vs. uniprot
Match: A0A6H5JYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.000e-7
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:  993 EEVCLPEDIYGSVRVSEFWQGLSEYSSLANTYVYDDIWASGG 1118
            E+V LP+DIYG+ RVSE+W G+   SSLA+TYVYDDIWA  G
Sbjct:  222 EQVSLPDDIYGAARVSEYWHGVPALSSLASTYVYDDIWAGDG 263
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0U5_ECTSI9.220e-866.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYD8_9PHAE1.000e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10295contigP-wetherbeei_contig10295:118..1637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1522
Hectar predicted targeting categoryother localisation
Exons1
Cds size1296
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.305314-UTR-P-wetherbeei_contig10295:117..3411683185862.305314-UTR-P-wetherbeei_contig10295:117..341Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10295 118..341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.3136127-CDS-P-wetherbeei_contig10295:341..16371683185862.3136127-CDS-P-wetherbeei_contig10295:341..1637Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10295 342..1637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10295.1.1prot_P-wetherbeei_contig10295.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10295 342..1637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10295.1.1

>prot_P-wetherbeei_contig10295.1.1 ID=prot_P-wetherbeei_contig10295.1.1|Name=mRNA_P-wetherbeei_contig10295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=432bp
MRGGNLAVSRPMAAELTGSMDASRRRMPSPTPLTADSEMRNGGGLLLGRL
HIRTAVATPGHGGPSGGASSGAASPTGDFHASPKARGAAASPWKRCTRSP
SPLPVSDGDDAYDGDLPAAAVSPPPDAGIKRPADSALEVCASLGSCSSWD
CGIGGSGDDPGALPLPTSVGLAASLAVVSASMYAAATSATITTTTSVTST
SGAVVPAAVGAPGPDPSTRSASAPLLSSDRVSAEGADAAASSVSLGRHAR
SSSALTEEVCLPEDIYGSVRVSEFWQGLSEYSSLANTYVYDDIWASGGLA
PNVDAGLQAAQARAVEAAATRAAGAPVGDGFGGGGDSAYGCSAGGGSAGG
GRAADDEAGEGGECFQADVLLEPNAFVPTSCPEVPLPVIVPSFGARCSIG
GGGGARSGGGSSATSPISYDYGGYGGYSGYGF
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mRNA from alignment at P-wetherbeei_contig10295:118..1637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10295.1.1 ID=mRNA_P-wetherbeei_contig10295.1.1|Name=mRNA_P-wetherbeei_contig10295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1520bp|location=Sequence derived from alignment at P-wetherbeei_contig10295:118..1637+ (Phaeothamnion wetherbeei SAG_119_79)
CCGAGGACTACGACGTCGCAATTCGCGGCGAGAAAAGCGTCGTGTTCCCC
AGTTCTTTCAAAGGCCCGCCGCCAATCGGAGCGGGCAATAAAACGAAGCA
ACGGGAGCACGGAGACGCGGAGGGCTAGCGCCCAGACCACTTCGCCGCCA
CGTCGCTGCATGACATCCAGGCGATTTCATCGCTCCATATCACCATAGTT
CAGCAACGGTATAGTGGCGGGGGGATGCGAGGGGGCAACCTCGCGGTCAG
CCGGCCGATGGCGGCGGAGCTGACTGGCTCGATGGACGCCTCGCGTCGTC
GGATGCCGTCCCCGACGCCGCTCACCGCCGATTCCGAAATGCGTAATGGA
GGCGGATTACTATTGGGGCGCCTACACATACGGACCGCCGTGGCAACACC
TGGCCACGGGGGGCCGTCCGGCGGCGCCTCCAGCGGTGCGGCGAGCCCGA
CAGGCGACTTCCACGCGTCGCCGAAGGCGCGGGGTGCGGCAGCATCGCCG
TGGAAGCGCTGCACCCGATCGCCCTCCCCTTTGCCGGTAAGTGACGGAGA
CGATGCCTACGACGGCGACCTGCCCGCGGCGGCCGTCTCCCCGCCGCCCG
ACGCCGGCATAAAACGGCCGGCCGACTCGGCGCTGGAGGTGTGCGCGTCG
CTTGGCTCGTGCTCCTCGTGGGACTGTGGCATAGGCGGCAGCGGCGACGA
TCCCGGCGCCTTGCCGCTGCCGACGTCCGTCGGCCTGGCCGCCTCCTTGG
CGGTGGTCTCTGCCTCCATGTACGCTGCCGCCACGTCTGCAACGATAACG
ACAACAACCTCTGTCACGTCAACATCGGGGGCGGTGGTGCCGGCGGCGGT
GGGCGCCCCCGGTCCCGATCCGTCCACCCGCTCCGCCTCGGCGCCGCTGC
TTTCCTCCGACCGCGTCTCTGCGGAGGGAGCGGATGCCGCGGCGTCGTCG
GTTTCGCTGGGCCGGCACGCCCGCTCTTCCTCGGCTCTCACCGAAGAAGT
CTGCCTCCCAGAAGACATTTACGGGAGCGTACGCGTGTCGGAATTCTGGC
AGGGCCTCTCGGAATACTCCAGCCTCGCCAACACGTATGTCTACGACGAC
ATTTGGGCGAGCGGCGGCCTCGCACCGAACGTCGACGCCGGCCTGCAGGC
GGCGCAGGCGCGCGCCGTCGAGGCGGCGGCGACGCGAGCGGCGGGGGCAC
CCGTCGGCGACGGCTTCGGCGGCGGCGGCGACAGCGCATACGGCTGCAGC
GCCGGCGGCGGCAGCGCCGGCGGCGGCAGAGCCGCCGATGACGAAGCGGG
CGAGGGTGGCGAGTGCTTCCAGGCGGACGTCCTTTTGGAGCCAAACGCAT
TCGTGCCGACGTCGTGCCCGGAGGTGCCGCTGCCGGTGATCGTGCCGTCG
TTCGGCGCGCGGTGCTCGATCGGCGGTGGCGGCGGCGCCCGCAGCGGCGG
CGGGAGCAGCGCCACGAGCCCGATCAGCTACGATTACGGCGGTTACGGTG
GCTACAGCGGCTACGGATTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10295:118..1637+

>mRNA_P-wetherbeei_contig10295.1.1 ID=mRNA_P-wetherbeei_contig10295.1.1|Name=mRNA_P-wetherbeei_contig10295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig10295:118..1637+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGAGGGGGCAACCTCGCGGTCAGCCGGCCGATGGCGGCGGAGCTGAC
TGGCTCGATGGACGCCTCGCGTCGTCGGATGCCGTCCCCGACGCCGCTCA
CCGCCGATTCCGAAATGCGTAATGGAGGCGGATTACTATTGGGGCGCCTA
CACATACGGACCGCCGTGGCAACACCTGGCCACGGGGGGCCGTCCGGCGG
CGCCTCCAGCGGTGCGGCGAGCCCGACAGGCGACTTCCACGCGTCGCCGA
AGGCGCGGGGTGCGGCAGCATCGCCGTGGAAGCGCTGCACCCGATCGCCC
TCCCCTTTGCCGGTAAGTGACGGAGACGATGCCTACGACGGCGACCTGCC
CGCGGCGGCCGTCTCCCCGCCGCCCGACGCCGGCATAAAACGGCCGGCCG
ACTCGGCGCTGGAGGTGTGCGCGTCGCTTGGCTCGTGCTCCTCGTGGGAC
TGTGGCATAGGCGGCAGCGGCGACGATCCCGGCGCCTTGCCGCTGCCGAC
GTCCGTCGGCCTGGCCGCCTCCTTGGCGGTGGTCTCTGCCTCCATGTACG
CTGCCGCCACGTCTGCAACGATAACGACAACAACCTCTGTCACGTCAACA
TCGGGGGCGGTGGTGCCGGCGGCGGTGGGCGCCCCCGGTCCCGATCCGTC
CACCCGCTCCGCCTCGGCGCCGCTGCTTTCCTCCGACCGCGTCTCTGCGG
AGGGAGCGGATGCCGCGGCGTCGTCGGTTTCGCTGGGCCGGCACGCCCGC
TCTTCCTCGGCTCTCACCGAAGAAGTCTGCCTCCCAGAAGACATTTACGG
GAGCGTACGCGTGTCGGAATTCTGGCAGGGCCTCTCGGAATACTCCAGCC
TCGCCAACACGTATGTCTACGACGACATTTGGGCGAGCGGCGGCCTCGCA
CCGAACGTCGACGCCGGCCTGCAGGCGGCGCAGGCGCGCGCCGTCGAGGC
GGCGGCGACGCGAGCGGCGGGGGCACCCGTCGGCGACGGCTTCGGCGGCG
GCGGCGACAGCGCATACGGCTGCAGCGCCGGCGGCGGCAGCGCCGGCGGC
GGCAGAGCCGCCGATGACGAAGCGGGCGAGGGTGGCGAGTGCTTCCAGGC
GGACGTCCTTTTGGAGCCAAACGCATTCGTGCCGACGTCGTGCCCGGAGG
TGCCGCTGCCGGTGATCGTGCCGTCGTTCGGCGCGCGGTGCTCGATCGGC
GGTGGCGGCGGCGCCCGCAGCGGCGGCGGGAGCAGCGCCACGAGCCCGAT
CAGCTACGATTACGGCGGTTACGGTGGCTACAGCGGCTACGGATTT
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