mRNA_P-wetherbeei_contig1029.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1029.4.1
Unique NamemRNA_P-wetherbeei_contig1029.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1029.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1029contigP-wetherbeei_contig1029:5164..7616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size988
Hectar predicted targeting categoryother localisation
Exons5
Cds size969
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1029.4.1prot_P-wetherbeei_contig1029.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1029 5182..7616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.1081836-UTR-P-wetherbeei_contig1029:5163..51811683185862.1081836-UTR-P-wetherbeei_contig1029:5163..5181Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1029 5164..5181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185862.1184072-CDS-P-wetherbeei_contig1029:5181..52361683185862.1184072-CDS-P-wetherbeei_contig1029:5181..5236Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1029 5182..5236 +
1683185862.1277256-CDS-P-wetherbeei_contig1029:5592..60141683185862.1277256-CDS-P-wetherbeei_contig1029:5592..6014Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1029 5593..6014 +
1683185862.1368551-CDS-P-wetherbeei_contig1029:6427..66551683185862.1368551-CDS-P-wetherbeei_contig1029:6427..6655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1029 6428..6655 +
1683185862.1453602-CDS-P-wetherbeei_contig1029:7074..71931683185862.1453602-CDS-P-wetherbeei_contig1029:7074..7193Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1029 7075..7193 +
1683185862.1545513-CDS-P-wetherbeei_contig1029:7471..76161683185862.1545513-CDS-P-wetherbeei_contig1029:7471..7616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1029 7472..7616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1029.4.1

>prot_P-wetherbeei_contig1029.4.1 ID=prot_P-wetherbeei_contig1029.4.1|Name=mRNA_P-wetherbeei_contig1029.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MAAVAAVHGAGVDIEAQEGVEPAPPSLAATASSTAPRRARHCLGNACLYR
NYLARAEFNLAGILLSLVFLTVKLEDGPVSWYAVMLPAAISYAGLFCAHA
AEGAFPGSSVAAIAAAAVRSRWQPAQDALHALSIALTLVVLSLYLSGAIP
SSTGIGLLLTPVWLNSAANTALFLASPPPARLAGNPEARERWARSQLNKL
RAHLLCYVLQGALVACKVDGVLASSSWASILWPTWVAYLLVGSTLLGATI
ALCMGLQQNHRGLVGPIVGTILAFWAMFMCSLCSLVLFVRRMDNARSTIS
PTAILAPMIAAVALWMALMPSIA
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mRNA from alignment at P-wetherbeei_contig1029:5164..7616+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1029.4.1 ID=mRNA_P-wetherbeei_contig1029.4.1|Name=mRNA_P-wetherbeei_contig1029.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2453bp|location=Sequence derived from alignment at P-wetherbeei_contig1029:5164..7616+ (Phaeothamnion wetherbeei SAG_119_79)
TGTGCACTTAAGGGCTATATGGCGGCGGTTGCAGCAGTTCACGGCGCAGG
TGTCGATATTGAGGCTCAAGAAGGTAATTTTCCCGTAGTTTGATGTCAAA
TCTCTGTTGTTTTCCCTTCTCTTTCCCCCAGCTTCGCCGTTTTTTTTCAC
GAGGAAAATGCTTGCTCTCCTGGGTTTTCCATTGCGTGATACCTGCATGA
CCATAACATTGCATCCTCTCATGCCTCTTCAAATTCTGATTCGTGGCTTT
CTAGCTCACCTTCGATCCCGTTTTAAACGGATCTCACTCGATTTACATTG
ACTTTTTGCTGTACACGTTGTGTCATCTAGCAAACCCCGACCGCAAAGCA
TACACCGCCGACCGTCGGCTTTGCGATCCTCCCTCTAACCGCCACTCTCC
CGCTCCGTCTCTCCATCTTGCGAACGAAGGGGTCGAACCGGCGCCGCCAA
GCCTCGCCGCGACTGCCTCCAGCACGGCACCAAGGCGCGCCCGCCACTGC
CTCGGCAACGCCTGCCTCTACCGCAACTACCTCGCGAGGGCTGAATTCAA
CCTCGCCGGCATCCTGCTCAGCCTCGTCTTCCTCACGGTAAAGCTCGAGG
ATGGCCCGGTCTCGTGGTATGCCGTCATGCTGCCCGCCGCCATCTCCTAC
GCCGGACTGTTCTGCGCGCACGCCGCCGAGGGCGCCTTCCCAGGCTCGAG
CGTCGCCGCTATCGCGGCGGCGGCAGTGCGGTCGCGCTGGCAGCCAGCGC
AAGATGCGCTGCATGCGCTGAGCATTGCGCTGACGCTGGTGGTGCTCTCG
CTCTACCTGTCGGGAGCCATTCCTTCCAGCACCGGCATCGGGCTTCTTCT
GGTTAGTTTAAGTCGTTTTAGTTTCCCGCCTGTCCCCGCGGGCAGCCTCA
TTAAAGCATTTCTCGAGAATCTGGCGCTGCTTAGTTTCGTTCATCTGTTC
ATTCTATTTCACCTCTGCTCTCGCTGCTGCCGGCACACTGACGAGAAATG
CGATGCGGAGGTTTGCTCGGCTTGGCTTTACGAGGAGAGAGAAATAGGAA
GAAATGACGCCGAGAGGTTGTGGCTCCATTGAGGGCGGCGTACAATGCCT
CCTTGTTTCGCGCAATAGCTGTAGAGTAACGCAACGGAGGGGAGTCATCC
CCGCCTTTTGCCATCCCGAACCGCGAGCCGCCATCTCTGCCGTAGCGGCT
TCTCAAGGTCCTCTTTTTCATATCCGTGTCCCCCTAACATACCCTACCCT
AAACCTACACACAGACGCCGGTCTGGCTCAACTCAGCGGCGAACACGGCG
CTCTTCCTGGCGTCGCCGCCGCCGGCCCGGCTGGCCGGCAATCCCGAGGC
GCGGGAACGCTGGGCCCGCTCGCAGCTCAACAAGCTGCGGGCGCACCTAC
TGTGCTACGTGCTGCAGGGCGCGCTCGTGGCTTGTAAAGTGGATGGCGTG
TTGGCGTCGTCGTCGTGGGCCTCCATCCTATGGCCCACCTGGGTGAGTCG
TGTATTGTCTTCTGATTTTTGGTTCGCAAGGCCGTATCGGGTTTATATGT
TCCTTCTTTAAGCGGTAGCGGTTTCTCGGTGACAAGTTTTGGCGTGGTAG
CGTTTTGGAGCAGTCAGTCGTGGGGTTGGATCAGTAGCGGATAGCGTTCC
CTCTGTTTTGTTTCTCATTTTCGGCCGGCAGCTGCCGTTATAGATGTTAC
GATCCTGCTTTCCCTCTTTCTGTCTGGGGGCGGATGCTGTTCGGAATCGG
AAAACCGCCCTTCTCGACCGGAAGAGCGATTCCGACAGGCCTAGACTATG
ATGCTGTCCGTGGACGATGCATCTACTTCTGTCGCGACTGACTGACATAT
ACTGCCTTGTTTGAATCATCCTTCGTGTTTTTCCTGCTGCTGCCTGCCCT
CACGCCCGCAGGTGGCTTATCTTTTGGTGGGGTCGACGCTGCTGGGGGCG
ACCATCGCGCTGTGCATGGGGCTGCAGCAGAACCACCGCGGCCTCGTCGG
CCCCATCGTCGGCACGATCCTCGCCTTCTGGTGAGGAAGCGAGCAAAGCA
GCCACCCCTTTTCGGTCTGCTACTGCTGCCTGCTGCTATTGCCGCGGCCG
CCCCCTGCTGCTGTCATCACGGCCGGCGCTCTTCCCTGCTGGCATTCTTC
AAACCGCCTATCTCGGCCACGTTTCTATTGCTTGTCGCGGCTGCCACGTG
CCCTCTTCGTCATTCACACCTCAGGCTCCTTTTCCGCACTCCCCTTCACT
GATATGTGCTCTCCATCCCGCCCTTCCTCCCCCGCCCAAAAACACCACAA
AACCGCAGGGCCATGTTCATGTGCAGCTTGTGCAGCCTGGTGCTCTTCGT
CCGCCGGATGGACAACGCCCGCAGCACCATCTCCCCAACTGCCATCCTCG
CCCCCATGATCGCTGCCGTCGCGCTCTGGATGGCGCTGATGCCCTCCATC
GCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1029:5164..7616+

>mRNA_P-wetherbeei_contig1029.4.1 ID=mRNA_P-wetherbeei_contig1029.4.1|Name=mRNA_P-wetherbeei_contig1029.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig1029:5164..7616+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGCGGTTGCAGCAGTTCACGGCGCAGGTGTCGATATTGAGGCTCA
AGAAGGGGTCGAACCGGCGCCGCCAAGCCTCGCCGCGACTGCCTCCAGCA
CGGCACCAAGGCGCGCCCGCCACTGCCTCGGCAACGCCTGCCTCTACCGC
AACTACCTCGCGAGGGCTGAATTCAACCTCGCCGGCATCCTGCTCAGCCT
CGTCTTCCTCACGGTAAAGCTCGAGGATGGCCCGGTCTCGTGGTATGCCG
TCATGCTGCCCGCCGCCATCTCCTACGCCGGACTGTTCTGCGCGCACGCC
GCCGAGGGCGCCTTCCCAGGCTCGAGCGTCGCCGCTATCGCGGCGGCGGC
AGTGCGGTCGCGCTGGCAGCCAGCGCAAGATGCGCTGCATGCGCTGAGCA
TTGCGCTGACGCTGGTGGTGCTCTCGCTCTACCTGTCGGGAGCCATTCCT
TCCAGCACCGGCATCGGGCTTCTTCTGACGCCGGTCTGGCTCAACTCAGC
GGCGAACACGGCGCTCTTCCTGGCGTCGCCGCCGCCGGCCCGGCTGGCCG
GCAATCCCGAGGCGCGGGAACGCTGGGCCCGCTCGCAGCTCAACAAGCTG
CGGGCGCACCTACTGTGCTACGTGCTGCAGGGCGCGCTCGTGGCTTGTAA
AGTGGATGGCGTGTTGGCGTCGTCGTCGTGGGCCTCCATCCTATGGCCCA
CCTGGGTGGCTTATCTTTTGGTGGGGTCGACGCTGCTGGGGGCGACCATC
GCGCTGTGCATGGGGCTGCAGCAGAACCACCGCGGCCTCGTCGGCCCCAT
CGTCGGCACGATCCTCGCCTTCTGGGCCATGTTCATGTGCAGCTTGTGCA
GCCTGGTGCTCTTCGTCCGCCGGATGGACAACGCCCGCAGCACCATCTCC
CCAACTGCCATCCTCGCCCCCATGATCGCTGCCGTCGCGCTCTGGATGGC
GCTGATGCCCTCCATCGCC
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