mRNA_P-wetherbeei_contig10284.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10284.1.1
Unique NamemRNA_P-wetherbeei_contig10284.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: UPI0019585062 (hypothetical protein n=1 Tax=Herpetosiphon giganteus TaxID=2029754 RepID=UPI0019585062)

HSP 1 Score: 158 bits (399), Expect = 1.950e-46
Identity = 80/164 (48.78%), Postives = 100/164 (60.98%), Query Frame = 1
Query:    1 MSTFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEVYTDAAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            MST V   TYT +VT++TDK+LTSI NIIR SGL   +F    + LE GIKAWL+S HL  V LE+Y P T KLI  W FE+Y   +GD  FW D   I+YH+QK+GA P+ C Y + V NK G P V GWS    R      + S+GT I     +  T+Y+R
Sbjct:    1 MSTAVRVNTYTQSVTYVTDKMLTSIKNIIRWSGLSPEKFTSQWDTLERGIKAWLNSEHLQQVHLEVYNPTTNKLIGRWDFEIYYGFSGDGAFWVDPDAIKYHIQKSGAWPSTCSYQIIVTNKPGRPDVVGWSNATLRSTDGFIRQSIGTAIDGSGLSTGTTYWR 164          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: A0A2E0XBY6_9PLAN (HORMA domain containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0XBY6_9PLAN)

HSP 1 Score: 153 bits (386), Expect = 1.880e-44
Identity = 76/164 (46.34%), Postives = 104/164 (63.41%), Query Frame = 1
Query:    1 MSTFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEVYTDAAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            MSTFV   T+TH+VT++TDK+L S+  IIR SGL   +F    +VL+ GI AWL+S  L+ V LE++ P T+ LI  W F++Y  ++GD G W D  DI+YH++KAG  P+NC+Y V +  K G P V GWS   FR      + SLGTTI     +  T+Y+R
Sbjct:    1 MSTFVVVNTFTHSVTYVTDKMLMSLKEIIRCSGLSPEKFVADWKVLQDGISAWLNSRDLEAVHLEVFNPKTDVLIGRWDFDIYFGSSGDGGMWVDTDDIKYHIRKAGQWPSNCDYRVILTTKPGRPNVEGWSTTSFRSTDGFVRQSLGTTIDGNGISTGTAYWR 164          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: UPI000372906C (hypothetical protein n=1 Tax=Methyloversatilis universalis TaxID=378211 RepID=UPI000372906C)

HSP 1 Score: 149 bits (376), Expect = 5.980e-43
Identity = 75/163 (46.01%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    7 TFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEV-YTDAAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            T V+T +YTH+VT++ D +L S+ +IIR SGLD   F          +K WLDSGHL+ VVLE+Y+PG +KLI  W  +V YT AAGD  FW D   ++Y ++KAG VP+  +YS+ +QNK G P V GW+   +R+   + + SLGTT+  G   A T Y+R
Sbjct:    2 TAVATYSYTHSVTYVADNILKSLKDIIRLSGLDPDHFADRWASNLRAVKTWLDSGHLERVVLEVYDPGNDKLIIRWDVDVIYTWAAGDGSFWTDTDQLKYAIRKAGVVPSQAKYSLLLQNKPGRPDVEGWAPASYRNTDGMVKQSLGTTVEHGGLGANTGYWR 164          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: A0A4Q3VHQ9_9BACT (HORMA domain containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3VHQ9_9BACT)

HSP 1 Score: 145 bits (365), Expect = 2.940e-41
Identity = 75/165 (45.45%), Postives = 99/165 (60.00%), Query Frame = 1
Query:    1 MSTFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEV-YTDAAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            MST VS  TYTH+VT + D    S+ NI+  SGLD       R+ +   + AWLDS HL+ VVLE+Y+P  + LI  W  EV Y+ ++GD  FW D   +RY ++KAG +P+N  Y VK+Q   GEPAVAGWS C +R        SLGTT+S    +  T+Y R
Sbjct:    1 MSTVVSVNTYTHSVTFVADNFFKSLKNILLLSGLDPSNLVGDRDSIMRAMTAWLDSKHLEKVVLEVYDPRDDSLITAWDVEVGYSWSSGDGTFWTDTDQLRYAIKKAGVLPSNALYQVKLQTSPGEPAVAGWSDCAYRSREGFVPQSLGTTVSHSGLSGSTTYLR 165          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: UPI000255941B (hypothetical protein n=1 Tax=Oceanicola sp. S124 TaxID=1042378 RepID=UPI000255941B)

HSP 1 Score: 141 bits (356), Expect = 6.580e-40
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 1
Query:   19 TPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEVYTD-AAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            T T TH+VT++ D +L S+ +IIR+SG+   +F    EV   G+ AWLDS HL+ ++LEIY+P T+KLI  W  +V  D A+GD  FW D   +++ ++KAG  PA+ +Y + +  KAG P V GWS C +R  + + + SLG+TI      A  SY+R
Sbjct:    6 TYTRTHSVTYVADNILKSLKDIIRESGMSPAKFVNDTEVNRRGLTAWLDSEHLERIILEIYDPRTDKLITRWDIDVRYDWASGDASFWTDTEQLKWAIKKAGVAPADAKYDLILHTKAGRPDVVGWSSCGYRSTNGMVRQSLGSTIEHNGLGASASYWR 164          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: UPI0004035A3A (hypothetical protein n=1 Tax=Bradyrhizobium sp. WSM3983 TaxID=1038867 RepID=UPI0004035A3A)

HSP 1 Score: 134 bits (337), Expect = 4.780e-37
Identity = 66/162 (40.74%), Postives = 93/162 (57.41%), Query Frame = 1
Query:    7 TFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEVYTDAAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            T V+  +YTH+VT++ D +L S  +IIR SGLD      + E     +K WL+SGHL  VVLE+++P T+KL+  W  +V    +GD  FW D   I+YH+ KAG  P+   Y + + NK G P VAGWS   +R      +HSLG+TI         +Y+R
Sbjct:    2 TSVAVYSYTHSVTYVADNILKSFKDIIRLSGLDPANLVESWESNMLALKTWLNSGHLTCVVLEVFDPSTDKLVGRWDVDVVYGGSGDGNFWTDTDQIKYHILKAGLWPSQASYRLLMDNKPGRPDVAGWSSGTYRSTDGFARHSLGSTIEHNGLGGSAAYWR 163          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: UPI0013206DBE (HORMA domain containing protein n=1 Tax=Steroidobacter agaridevorans TaxID=2695856 RepID=UPI0013206DBE)

HSP 1 Score: 134 bits (337), Expect = 4.780e-37
Identity = 73/161 (45.34%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   13 VSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEVYTDAAGDQG-FWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            V+  +YTH+VT++ D +L S+ +IIR SGLD  +     EVL  GI  W++S HL  V LEIYEP T KLI  W   V      + G FW D   +RY ++K+G +PA  +Y V VQNK GEP VAGWS   +     + + SLGTTI      A TSY+R
Sbjct:    4 VAVYSYTHSVTYVADNILKSLKDIIRLSGLDPQKLIGDWEVLLRGISRWIESQHLRSVTLEIYEPSTNKLITRWDVSVSYQWDLNAGTFWTDTDQLRYAIKKSGLLPAQAQYRVLVQNKPGEPEVAGWSNTSYLSTDGMVRQSLGTTIEHNGLGANTSYWR 164          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: A3X0C1_9BRAD (bacHORMA_2 domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A3X0C1_9BRAD)

HSP 1 Score: 133 bits (334), Expect = 1.360e-36
Identity = 66/163 (40.49%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    7 TFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEV-YTDAAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            T V+  TYTH+VT++ D +L S+ +IIR SGLD              ++ WL+S HL+ VVLEI++P T+KL+  W  +V YT  +GD GFW D   I+YH++KAG  P+  +Y + +QNK G P V GW   ++R      +H LG+TI         +Y+R
Sbjct:    2 TSVAVNTYTHSVTYVADNILKSMKDIIRLSGLDPTNLVDGWSSKMRALQTWLESRHLEVVVLEIFDPRTDKLVGRWDIDVVYTTGSGDGGFWTDTDQIKYHVRKAGLAPSEAKYRLLLQNKPGRPDVDGWGPAEYRSTEGFVRHGLGSTIEHNGLGGSAAYWR 164          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: D6V078_9BRAD (bacHORMA_2 domain-containing protein n=1 Tax=Afipia sp. 1NLS2 TaxID=666684 RepID=D6V078_9BRAD)

HSP 1 Score: 128 bits (322), Expect = 8.840e-35
Identity = 68/161 (42.24%), Postives = 92/161 (57.14%), Query Frame = 1
Query:   13 VSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEV-YTDAAGDQGFWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYYR 492
            V+  TYTH+VT++ D +L S+ +IIR SGLD   F         G++ WL++G L+ V LEIY+P T+ LI  W  E+ Y  + GD  FW D   +RY ++KAG  P+   Y   +Q K G P V GWS+   R    + + SLGTTI      ARTSY R
Sbjct:    4 VAVNTYTHSVTYVADNILKSLKDIIRLSGLDPSEFVGDWATHMRGVQTWLNTGDLETVELEIYDPKTDALIFRWDIEISYGWSGGDGSFWTDTDQLRYAIRKAGLAPSEARYRFLLQTKPGRPDVIGWSKTSGRSTDGMIRQSLGTTIEHSGLGARTSYLR 164          
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Match: UPI00190C55DD (hypothetical protein n=1 Tax=Luteolibacter yonseiensis TaxID=1144680 RepID=UPI00190C55DD)

HSP 1 Score: 128 bits (321), Expect = 1.250e-34
Identity = 70/165 (42.42%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 MSTFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGIKAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEV-YTDAAGDQG-FWFDGADIRYHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTTISVGNTAARTSYY 489
            MST V   TY+H+VTH+TD +L+ +  II  SGL + +     +VLEAGI  WL++ HL+ V LEIY  GT  L+  W F++ YT   GD G  W D   I++ ++KAGA+P+ C Y V    K G P V GWS  Q+       +  +GTTI   +  A TSY+
Sbjct:    1 MSTTVKVNTYSHSVTHVTDNILSGLKRIILLSGLSLDKLTSDWKVLEAGIGKWLETRHLNTVTLEIYT-GTSSLVGRWDFDISYTYTTGDDGDLWADVDAIKFAIKKAGAIPSTCIYRVIANTKDGRPDVNGWSSTQYLSTDGFTKRPIGTTIGATHLGAGTSYW 164          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10284.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00195850621.950e-4648.78hypothetical protein n=1 Tax=Herpetosiphon gigante... [more]
A0A2E0XBY6_9PLAN1.880e-4446.34HORMA domain containing protein n=1 Tax=Planctomyc... [more]
UPI000372906C5.980e-4346.01hypothetical protein n=1 Tax=Methyloversatilis uni... [more]
A0A4Q3VHQ9_9BACT2.940e-4145.45HORMA domain containing protein n=1 Tax=bacterium ... [more]
UPI000255941B6.580e-4042.77hypothetical protein n=1 Tax=Oceanicola sp. S124 T... [more]
UPI0004035A3A4.780e-3740.74hypothetical protein n=1 Tax=Bradyrhizobium sp. WS... [more]
UPI0013206DBE4.780e-3745.34HORMA domain containing protein n=1 Tax=Steroidoba... [more]
A3X0C1_9BRAD1.360e-3640.49bacHORMA_2 domain-containing protein n=2 Tax=Prote... [more]
D6V078_9BRAD8.840e-3542.24bacHORMA_2 domain-containing protein n=1 Tax=Afipi... [more]
UPI00190C55DD1.250e-3442.42hypothetical protein n=1 Tax=Luteolibacter yonseie... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10284contigP-wetherbeei_contig10284:196..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123242.JH636434_gene4469
Model size495
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.24e-39
EggNOG OGs29KVY@1|root,307TE@2|Bacteria
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.7882903-CDS-P-wetherbeei_contig10284:195..6901683185861.7882903-CDS-P-wetherbeei_contig10284:195..690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10284 196..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10284.1.1prot_P-wetherbeei_contig10284.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10284 196..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10284.1.1

>prot_P-wetherbeei_contig10284.1.1 ID=prot_P-wetherbeei_contig10284.1.1|Name=mRNA_P-wetherbeei_contig10284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MSTFVSTPTYTHTVTHMTDKLLTSISNIIRDSGLDMGRFCRTREVLEAGI
KAWLDSGHLDYVVLEIYEPGTEKLIKLWKFEVYTDAAGDQGFWFDGADIR
YHLQKAGAVPANCEYSVKVQNKAGEPAVAGWSRCQFRDASALRQHSLGTT
ISVGNTAARTSYYR*
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mRNA from alignment at P-wetherbeei_contig10284:196..690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10284.1.1 ID=mRNA_P-wetherbeei_contig10284.1.1|Name=mRNA_P-wetherbeei_contig10284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig10284:196..690+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACGTTCGTCAGCACGCCCACCTACACCCACACCGTCACGCACAT GACGGACAAGCTGCTGACGTCGATTAGCAACATCATCCGCGACAGCGGCC TGGACATGGGCCGCTTTTGCCGGACGCGCGAGGTGCTGGAGGCGGGCATC AAAGCCTGGCTCGACAGCGGGCACCTGGACTATGTTGTGCTTGAGATCTA TGAGCCCGGCACGGAGAAGCTGATCAAGCTCTGGAAGTTCGAAGTCTACA CCGACGCCGCCGGCGACCAGGGTTTTTGGTTCGACGGCGCCGACATCCGC TACCACCTGCAGAAAGCCGGCGCGGTGCCGGCCAACTGCGAATACAGCGT GAAGGTGCAGAACAAGGCCGGGGAGCCGGCCGTGGCCGGCTGGAGCCGCT GCCAGTTCCGCGACGCCTCGGCCCTCCGCCAACACAGCTTGGGCACGACC ATCTCGGTCGGCAACACGGCCGCACGCACCAGCTACTACCGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10284:196..690+

>mRNA_P-wetherbeei_contig10284.1.1 ID=mRNA_P-wetherbeei_contig10284.1.1|Name=mRNA_P-wetherbeei_contig10284.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig10284:196..690+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCACGTTCGTCAGCACGCCCACCTACACCCACACCGTCACGCACAT
GACGGACAAGCTGCTGACGTCGATTAGCAACATCATCCGCGACAGCGGCC
TGGACATGGGCCGCTTTTGCCGGACGCGCGAGGTGCTGGAGGCGGGCATC
AAAGCCTGGCTCGACAGCGGGCACCTGGACTATGTTGTGCTTGAGATCTA
TGAGCCCGGCACGGAGAAGCTGATCAAGCTCTGGAAGTTCGAAGTCTACA
CCGACGCCGCCGGCGACCAGGGTTTTTGGTTCGACGGCGCCGACATCCGC
TACCACCTGCAGAAAGCCGGCGCGGTGCCGGCCAACTGCGAATACAGCGT
GAAGGTGCAGAACAAGGCCGGGGAGCCGGCCGTGGCCGGCTGGAGCCGCT
GCCAGTTCCGCGACGCCTCGGCCCTCCGCCAACACAGCTTGGGCACGACC
ATCTCGGTCGGCAACACGGCCGCACGCACCAGCTACTACCGCTAA
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