mRNA_P-wetherbeei_contig10280.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10280.1.1
Unique NamemRNA_P-wetherbeei_contig10280.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10280.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10280contigP-wetherbeei_contig10280:668..2281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size793
Hectar predicted targeting categoryother localisation
Exons3
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.6319706-UTR-P-wetherbeei_contig10280:667..7481683185861.6319706-UTR-P-wetherbeei_contig10280:667..748Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10280 668..748 +
1683185861.6396494-UTR-P-wetherbeei_contig10280:1168..11941683185861.6396494-UTR-P-wetherbeei_contig10280:1168..1194Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig10280 1169..1194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.6485689-CDS-P-wetherbeei_contig10280:1194..17801683185861.6485689-CDS-P-wetherbeei_contig10280:1194..1780Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10280 1195..1780 +
1683185861.6575134-CDS-P-wetherbeei_contig10280:2183..22811683185861.6575134-CDS-P-wetherbeei_contig10280:2183..2281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10280 2184..2281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10280.1.1prot_P-wetherbeei_contig10280.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10280 1195..2281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10280.1.1

>prot_P-wetherbeei_contig10280.1.1 ID=prot_P-wetherbeei_contig10280.1.1|Name=mRNA_P-wetherbeei_contig10280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=228bp
MPGRNGSPRRKGAGASAAAAAAFVTTQSGSPSPARRRTDTQEYEAPTQTT
SATGAAAAHAPAPTLQRQPSGRSSQQLSGDAATSAAAAAALALTSTGSGR
NLTADAAALLPSPLAAAGLPPRSRSRGALLADLAVSTGAASVGVGGEPPP
PQRWEWQQHSDGGASSARGAAAPSAVPRPALEVASSSSTLGINHGGGARA
AIPPRLNFGEGGPGAGEDLPTPPLTQRS
back to top

mRNA from alignment at P-wetherbeei_contig10280:668..2281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10280.1.1 ID=mRNA_P-wetherbeei_contig10280.1.1|Name=mRNA_P-wetherbeei_contig10280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1614bp|location=Sequence derived from alignment at P-wetherbeei_contig10280:668..2281+ (Phaeothamnion wetherbeei SAG_119_79)
TGCCACCAGAGCAGAGAGACAGCCGCTCGACGAATCTTTCGTTCTCGTCC
TCGTTCTCGAGCACTTCTACCCCCGAATTCGGTAAGTGTTGCAGGCCTCG
AGGGGACATTGGCCTGCACATTTGTCTGTTTCGTATGCAAGCTGGCCTGG
CATACACCTGCCTCCTATACGGTATCTCTGGTGCCTTCGCAATACCCTTT
GAACGCTACGGGAGGCGCCCCTGGAACAGTGAACCAGAATGCCATGGCGT
GGTTCCGCGGACGTGGGCGGGCGGACCGAGGAAACACTTTGACCCGCCAC
CTCAGTTTTACCACCTGCATGCGGCCACCACTTTAGTGCTAAGTGGTAAA
CTTTGCATCAATATCGCCACACGAAACTACGGCGCTCGCCCATCAGGTTG
GAAATTTTCCTGGTGAAAGCCGGCGAGCAGTATACTCTCTTTCTTACCTT
TTTGCTCTCCTCTAACTCTTGCCTTACGCTCGGCTCTCCTGCCTCCAGCA
GCAGCAGCTGCCTCGCGATAGGTTGCTATGCCCGGGCGGAACGGCTCGCC
GCGCCGCAAGGGCGCCGGGGCAAGCGCCGCGGCGGCAGCGGCGTTTGTTA
CAACTCAGAGCGGCAGTCCCTCTCCGGCGCGAAGACGCACCGACACACAG
GAGTATGAAGCTCCAACACAAACCACCTCTGCCACTGGCGCCGCCGCGGC
ACACGCGCCGGCACCGACGCTGCAGCGGCAGCCGTCTGGCCGGTCGTCCC
AACAGCTGAGCGGCGATGCCGCTACCTCTGCCGCCGCCGCCGCCGCCCTG
GCCCTCACCAGCACCGGCAGTGGACGGAACCTTACGGCTGATGCCGCCGC
CCTCTTGCCGTCGCCACTGGCGGCGGCGGGGCTGCCGCCGAGATCCCGCT
CCCGCGGCGCGCTGCTCGCGGACCTGGCGGTTAGTACGGGGGCCGCAAGC
GTAGGCGTGGGAGGGGAGCCACCGCCACCGCAGCGGTGGGAGTGGCAACA
ACACAGCGACGGCGGCGCATCGTCGGCGCGCGGCGCGGCAGCGCCGTCCG
CGGTGCCGCGGCCGGCACTAGAAGTGGCCAGCTCCTCCAGCACCCTCGGC
ATCAACCACGGAGGTGAAACTGGAAAGAAAGCAATAAATTGCGGTCGCGT
AAATACGTCCGAAGAGGATGGAAAGAGAACGGGCGGATCAACTTTCAGCG
CCGGACTTGACATGGGCGCGTGGGGCTTGGCAGCTGGAAGGGGAGGGATG
AGGATGCGGTGTCGCTCGAGAGAGCGGTGCGGCTAGCATACGTCAAGACG
ATTGCGACTGAGCTGCAGTGCCTATGACAATGAACCATTGCCGTGATTTG
TTCTCCGTAACCGGCACCGCGAGAAGAATCTCTTCAAATCCAACCCCCAG
AGCTTTCGTTGCCATCATATGCCGCACTTTTTGCTCAATTCCTCCTCAAC
TTTGCTTGCTCGCAAACTAATAATAAGTGTCTCAATTGCCCAGCCTTCGT
CGAAACCCCGCTGCAGGTGGTGCGCGGGCGGCCATACCGCCGCGGCTCAA
CTTCGGCGAAGGCGGCCCGGGCGCTGGGGAAGACCTACCGACGCCTCCGT
TGACGCAACGGTCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig10280:668..2281+

>mRNA_P-wetherbeei_contig10280.1.1 ID=mRNA_P-wetherbeei_contig10280.1.1|Name=mRNA_P-wetherbeei_contig10280.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=684bp|location=Sequence derived from alignment at P-wetherbeei_contig10280:668..2281+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGGGCGGAACGGCTCGCCGCGCCGCAAGGGCGCCGGGGCAAGCGC
CGCGGCGGCAGCGGCGTTTGTTACAACTCAGAGCGGCAGTCCCTCTCCGG
CGCGAAGACGCACCGACACACAGGAGTATGAAGCTCCAACACAAACCACC
TCTGCCACTGGCGCCGCCGCGGCACACGCGCCGGCACCGACGCTGCAGCG
GCAGCCGTCTGGCCGGTCGTCCCAACAGCTGAGCGGCGATGCCGCTACCT
CTGCCGCCGCCGCCGCCGCCCTGGCCCTCACCAGCACCGGCAGTGGACGG
AACCTTACGGCTGATGCCGCCGCCCTCTTGCCGTCGCCACTGGCGGCGGC
GGGGCTGCCGCCGAGATCCCGCTCCCGCGGCGCGCTGCTCGCGGACCTGG
CGGTTAGTACGGGGGCCGCAAGCGTAGGCGTGGGAGGGGAGCCACCGCCA
CCGCAGCGGTGGGAGTGGCAACAACACAGCGACGGCGGCGCATCGTCGGC
GCGCGGCGCGGCAGCGCCGTCCGCGGTGCCGCGGCCGGCACTAGAAGTGG
CCAGCTCCTCCAGCACCCTCGGCATCAACCACGGAGGTGGTGCGCGGGCG
GCCATACCGCCGCGGCTCAACTTCGGCGAAGGCGGCCCGGGCGCTGGGGA
AGACCTACCGACGCCTCCGTTGACGCAACGGTCC
back to top