mRNA_P-wetherbeei_contig10264.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig10264.1.1
Unique NamemRNA_P-wetherbeei_contig10264.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: D7FV78_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV78_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.030e-51
Identity = 86/160 (53.75%), Postives = 117/160 (73.12%), Query Frame = 1
Query:    1 QTNSGGQLVRSILQLLEEWEYHFA--GPTNQAVRSMMAKHVD-VPYPNSTLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAELHSIR 471
            Q+  G +L+R ILQLLEEWEYHFA  G  + +V++M+AK++D + +     D ++       + +VARL KFNNE+ YE+LLTP VP  LDY+EV+FS+C+V+C IY KF++EECY  A V++ LVKVD K KHH++NV AKEFTDMS NI K EL ++R
Sbjct:  136 QSKGGLELIRGILQLLEEWEYHFALAGVAHHSVKAMLAKNIDNLDHSARGRDASEEGGGKHQEQIVARLKKFNNEVVYENLLTPEVPFSLDYLEVVFSLCEVMCRIYAKFVEEECYKNAFVYDGLVKVDNKIKHHIINVFAKEFTDMSTNIAKDELKTLR 295          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A836CEB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEB8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 4.150e-49
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 1
Query:   13 GGQLVRSILQLLEEWEYHFAGPTNQAVRSMMAKHVDVPYPNSTLDDNDPAAR--DPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAELHSIR 471
            G  +VR  LQL EEWEYHFAG   Q+VR +MAK V+       ++    A+   + +  VVARL KF +E+ YEHLLTP +P  LDY EV FS+CD++C +YNK M+EECY    VFEALVKVD K K H+LNVTAKEFT+MS  I ++EL ++R
Sbjct:   72 GAAVVRGALQLFEEWEYHFAGNAAQSVRGLMAK-VNTQTQGQGVEGGGSASGGGEDNNPVVARLCKFGSEMVYEHLLTPPLPFALDYFEVFFSLCDIICQVYNKLMEEECYSNVHVFEALVKVDAKVKRHVLNVTAKEFTEMSAKIARSELAALR 225          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A7S2CN58_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CN58_9STRA)

HSP 1 Score: 141 bits (355), Expect = 5.210e-40
Identity = 68/154 (44.16%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   10 SGGQLVRSILQLLEEWEYHFAGPTNQAVRSMMAKHVDVPYPNSTLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAELHSIR 471
            +G   V ++ QL++E+EYHFA    Q VR   A++ +  YP        P     D+   A L++F NE+ Y HL TP V  +LDY EV+FS+CDVL L+YNKF+DEE +  +AVF+ LVK D + KHH++N+ AKE TD+S  I++ E  ++R
Sbjct:    5 AGAVTVEALWQLIQEYEYHFANSAMQMVRYTTARNSECVYPQLN-----PREEGEDEAAKANLYRFGNEVVYLHLQTPHVAFELDYREVLFSLCDVLSLLYNKFVDEEIWQNSAVFDMLVKADSRIKHHVINLLAKELTDLSTQILRNEFSALR 153          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A7R9Y7M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7M0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 9.080e-30
Identity = 52/132 (39.39%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   10 SGGQLVRSILQLLEEWEYHFAGPTNQAVRSMMAKHVDVPYPNSTLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLN 405
            SG  +++++LQL EEWEY  AG T Q V+ +MAK    P+P +           P+  V A L++F++E+ YE L  P++ +++DY E++ S+C+ L L+Y KF++ +CY  A +F+AL+++D K K HL+N
Sbjct:  132 SGPTVLQAVLQLFEEWEYWMAGSTTQGVKWVMAKSSAKPHPTTAA-----VPSSPEDAVKAGLYRFHSEVIYERLCLPQLSIEIDYFELIISLCETLTLLYKKFLESDCYSNALLFDALMRMDAKVKQHLVN 258          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A7S3MFY2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFY2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.090e-29
Identity = 59/156 (37.82%), Postives = 93/156 (59.62%), Query Frame = 1
Query:    7 NSGGQLVRSILQLLEEWEYHFAGPTNQAVRSMMAKHVDVPYPN-STLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAELHSIR 471
            N+G  +VR+  QL+EEWEY  +G T Q+V+ MMAK+    YP  S ++     AR         ++KFNN + +EHL  P +P +LDY+EV   +C  L  +Y K + EECY    +++ +V++D + KHH++N+ +KE TD     +K+   S+R
Sbjct:  114 NAGLPVVRAFSQLMEEWEYVHSGTTMQSVKFMMAKNSTCVYPQMSPIEGFSDLAR-------PSVYKFNNAVVFEHLRLPHIPFELDYLEVFTGLCVELSKLYEKLIHEECYANQIIYDTIVRLDTRVKHHIINLVSKEVTDACSAKMKSNTRSLR 262          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A4D9CUK2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUK2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.080e-27
Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   25 VRSILQLLEEWEYHFAGPTNQAVRSMMAKHVDVPYPNSTLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECYG---GAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAELHSIR 471
            +RS+ QL EE EYH +    QA++ ++AK +D P+P             P++ +  R+F+F+NE+ +++   P +P  LDY+EV+ S+C  L L+Y +            AA+FE LVK+D K KHH++N  AKE T ++  + K EL   R
Sbjct:  143 LRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFPEQA----------PEEPINPRIFRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGHRHAASLERDAALFEVLVKIDAKVKHHIINPIAKELTSLATRLAKQELEGWR 284          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A7S2GL83_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GL83_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.770e-24
Identity = 45/92 (48.91%), Postives = 67/92 (72.83%), Query Frame = 1
Query:  196 LFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAELHSIR 471
            LF+ ++EI Y HL+TP VP  +DY+EV+ S+CDVL L+Y+K +  E +   AV++ LV+VD + KHH++N  AKE TD+SI+I++ EL   R
Sbjct:    4 LFRSSHEIVYMHLVTPHVPFPIDYVEVIHSLCDVLVLVYHKLVHCESWQSPAVYDMLVRVDSRIKHHIINRIAKELTDLSISILRRELLEYR 95          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A812XE45_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XE45_SYMMI)

HSP 1 Score: 87.0 bits (214), Expect = 6.160e-19
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   10 SGGQLVRSILQLLEEWEYHFAGPTNQAVRSMMAKHVDVPYPNSTLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEECY 339
            +G   +R+  QLLEEWEY FA    Q ++ +MA+      P    +D D      DQ+  + ++KFNN++ YEHLL P VP  LDY+EV   +CD+L  +Y K   E+ +
Sbjct:   37 NGPVTIRAFAQLLEEWEYMFASAPMQGMKYVMARSSAFALPQFNPNDGD-----ADQIK-SSIYKFNNDVVYEHLLCPHVPFDLDYLEVFHGLCDMLFALYGKLWHEDAF 140          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A8K1C382_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C382_PYTOL)

HSP 1 Score: 92.0 bits (227), Expect = 6.920e-19
Identity = 50/146 (34.25%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   40 QLLEEWEYHFAGPTNQAVRSMMAKHVDVPY-PNSTLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVLCLIYNKFMDEE-CYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAELHSIR 471
            QLLEE E++F+  T Q+++ M+A      + P   +DD        D+     ++K+N    +  LLTP +P  LDY EVM S+CD+L L+Y+KF+++  C     +F+A+V+ D K K  +++   KEF+ ++ +++  EL S+R
Sbjct:  258 QLLEELEFYFSSATVQSMKLMVATSTPTLHQPLHKMDDE--GIYSVDEPFRPTIYKWNQRPVFRRLLTPSIPFPLDYREVMLSLCDILALVYSKFVEDNICSENIFLFQAIVRFDEKIKKLVIDPVKKEFSAVAASVLNDELTSVR 401          
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Match: A0A151ZA91_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZA91_9MYCE)

HSP 1 Score: 88.6 bits (218), Expect = 7.880e-18
Identity = 52/155 (33.55%), Postives = 86/155 (55.48%), Query Frame = 1
Query:    4 TNSGGQLVRSILQLLEEWEYHFA-GPTNQAVRSMMAKHVDVPYPNSTLDDNDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPL--QLDYIEVMFSMCDVLCLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVKAEL 459
            T+ G   VRS++QL+EE++YHF  G   Q V+ +++K      P  T+ + +       + + +++ K  N + YE L    + +   LDY  V+FS+ ++L LIY KF  E C     V+EAL+KVD + KHH+    +KE   +S  I++ +L
Sbjct:  145 TDKGPAYVRSLVQLMEEYDYHFELGSAMQGVKVLLSKK----QPTHTVVNEN-------EHIKSKIMKIGNTVVYEFLKIFNISMAKDLDYFHVVFSLLEILELIYKKFDKETC-SSKYVYEALLKVDSRLKHHIFGFLSKEIDKISTQIIREQL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig10264.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FV78_ECTSI1.030e-5153.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEB8_9STRA4.150e-4954.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CN58_9STRA5.210e-4044.16Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7R9Y7M0_9STRA9.080e-3039.39Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3MFY2_9STRA2.090e-2937.82Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9CUK2_9STRA7.080e-2736.18Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2GL83_9STRA2.770e-2448.91Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812XE45_SYMMI6.160e-1939.09Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A8K1C382_PYTOL6.920e-1934.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A151ZA91_9MYCE7.880e-1833.55Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig10264contigP-wetherbeei_contig10264:874..2228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FV78
Model size474
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.68e-52
EggNOG OGs2ADY6@1|root,2RYUG@2759|Eukaryota
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185861.3199172-CDS-P-wetherbeei_contig10264:873..10231683185861.3199172-CDS-P-wetherbeei_contig10264:873..1023Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10264 874..1023 -
1683185861.331276-CDS-P-wetherbeei_contig10264:1378..15221683185861.331276-CDS-P-wetherbeei_contig10264:1378..1522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10264 1379..1522 -
1683185861.3432148-CDS-P-wetherbeei_contig10264:2048..22281683185861.3432148-CDS-P-wetherbeei_contig10264:2048..2228Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig10264 2049..2228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig10264.1.1prot_P-wetherbeei_contig10264.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig10264 874..2228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig10264.1.1

>prot_P-wetherbeei_contig10264.1.1 ID=prot_P-wetherbeei_contig10264.1.1|Name=mRNA_P-wetherbeei_contig10264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=158bp
QTNSGGQLVRSILQLLEEWEYHFAGPTNQAVRSMMAKHVDVPYPNSTLDD
NDPAARDPDQVVVARLFKFNNEIAYEHLLTPRVPLQLDYIEVMFSMCDVL
CLIYNKFMDEECYGGAAVFEALVKVDGKFKHHLLNVTAKEFTDMSINIVK
AELHSIR*
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mRNA from alignment at P-wetherbeei_contig10264:874..2228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig10264.1.1 ID=mRNA_P-wetherbeei_contig10264.1.1|Name=mRNA_P-wetherbeei_contig10264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1355bp|location=Sequence derived from alignment at P-wetherbeei_contig10264:874..2228- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGAACAGCGGGGGCCAGCTGGTGCGGAGCATCCTCCAGCTGCTGGA GGAGTGGGAGTACCACTTCGCGGGTCCCACCAACCAGGCGGTGCGCTCTA TGATGGCCAAGCATGTCGACGTCCCCTACCCTAACTCCACACTTGACGAC AATGACCCGGCGGCCCGCGACCCAGACCAGGTGCGATTTGGGGGATTCTG GCTCAGATTAGATCGATTACTCGTGTTACCGGTCATCGAATGCGGACAAT AGCGCGAGAAAGAACTGGAGAAAGAAGATTTCGGGTTGGTTGGCTTCGGA TGTTCGAAGAAAGAGTCTTGTCGGGTAAATTGCGGACGCGTCACAACGTC TGAAGCGGCCGCTTACCCCTTAAAGTAACGAGATGGGTTGCATTAGCCGC ATGGCGGCGGCTGCTGTAGGTGCGCTGCAGCACGCATCATTGCCGTCGTC GTTGACGTCGGAGGTGGCTACATCGTTTTGCGGCTTCCATTCGCCTTCCT CGCATACTTCTTTCTTGCCGTTCCCGCCTGCCTCTCCTCGTCTCCTCGTC TTCGATTCCCTTCTCTCCCTTCATGTATCCTTGCTTGCTTTGGATGCTGG ATCGCCCATCCCCGAAGTTCCCGTCATGTCGTCATGCCCAACCAACCGCT GCCCCTGCTTACCTTCCCAAATCCTTTGGGGTCCGCCGGCGCTTTCGGTC AATAAGGTTGTGGTGGCGCGGCTGTTCAAGTTCAACAACGAGATTGCATA CGAACACCTGCTGACGCCGCGGGTGCCACTGCAGCTCGACTACATCGAGG TCATGTTCTCCATGTGCGACGTCCTCTGCCTCATCTACAATAAGTTCATG GTAAGCCCGCTAGGAGTCAGCTGGCTGCTTTTTGCTGGATTTTTTAGGTG TTCGGGCGATTACGGGGCGGTTGTGAGCAATTGCCGGTAATGTGTGCGGT CAGCGAGCGGATGTGGGGGTGCTGCGCTTGCCGGCGGCTATAGAGCCGGA GGTAGTATAGAGAGGGAAGTAATGGCCGTTTTTGGTCTCCCCTGGTGTAA TGGTGGCTGGCCGGCTGATGCCGGAGCGGTGGCGGCAGTTCTGACGCCGA TTGACGAGAGTGAAGTGAGATGCATGTATCATCACAGTCATCCACTCGGC GCCGCCATTTCCAGCTCCTCCAAAACGAAACCATCAGATGCGGAAAACAA ACCAGGACGAGGAGTGCTACGGCGGTGCGGCGGTGTTCGAAGCGCTGGTG AAGGTGGACGGCAAGTTTAAGCATCATCTGCTCAACGTGACGGCCAAGGA GTTTACCGACATGAGCATCAACATCGTCAAGGCCGAGCTACACTCCATCC GGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig10264:874..2228-

>mRNA_P-wetherbeei_contig10264.1.1 ID=mRNA_P-wetherbeei_contig10264.1.1|Name=mRNA_P-wetherbeei_contig10264.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=474bp|location=Sequence derived from alignment at P-wetherbeei_contig10264:874..2228- (Phaeothamnion wetherbeei SAG_119_79)
CAGACGAACAGCGGGGGCCAGCTGGTGCGGAGCATCCTCCAGCTGCTGGA
GGAGTGGGAGTACCACTTCGCGGGTCCCACCAACCAGGCGGTGCGCTCTA
TGATGGCCAAGCATGTCGACGTCCCCTACCCTAACTCCACACTTGACGAC
AATGACCCGGCGGCCCGCGACCCAGACCAGGTTGTGGTGGCGCGGCTGTT
CAAGTTCAACAACGAGATTGCATACGAACACCTGCTGACGCCGCGGGTGC
CACTGCAGCTCGACTACATCGAGGTCATGTTCTCCATGTGCGACGTCCTC
TGCCTCATCTACAATAAGTTCATGGACGAGGAGTGCTACGGCGGTGCGGC
GGTGTTCGAAGCGCTGGTGAAGGTGGACGGCAAGTTTAAGCATCATCTGC
TCAACGTGACGGCCAAGGAGTTTACCGACATGAGCATCAACATCGTCAAG
GCCGAGCTACACTCCATCCGGTGA
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